Typing tool
|
Complete norovirus genomes
GQ845024 | GII.4 Den Haag | ||
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GII.P4 Den Haag |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7513LOCUS GQ845024 7562 bp RNA linear VRL 06-FEB-2012 DEFINITION Norovirus Hu/GII.4/Rathmines/NSW287R/2007/AUS, complete genome. ACCESSION GQ845024 VERSION GQ845024.2 KEYWORDS . SOURCE Norovirus Hu/GII.4/Rathmines/NSW287R/2007/AUS ORGANISM Norovirus Hu/GII.4/Rathmines/NSW287R/2007/AUS Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7562) AUTHORS Eden,J.S., Bull,R.A., Tu,E., McIver,C.J., Lyon,M.J., Marshall,J.A., Smith,D.W., Musto,J., Rawlinson,W.D. and White,P.A. TITLE Norovirus GII.4 variant 2006b caused epidemics of acute gastroenteritis in Australia during 2007 and 2008 JOURNAL J. Clin. Virol. 49 (4), 265-271 (2010) PUBMED 20888289 REFERENCE 2 (bases 1 to 7562) AUTHORS Eden,J.-S., Bull,R.A., Tu,E.T.V., McIver,C.J., Lyon,M.J., Marshall,J.A., Smith,D.W., Musto,J., Rawlinson,W.D. and White,P.A. TITLE Direct Submission JOURNAL Submitted (25-AUG-2009) School of Biotechnology & Biomolecular Sciences, University of New South Wales, Anzac Parade, Sydney, NSW 2052, Australia REFERENCE 3 (bases 1 to 7562) AUTHORS Eden,J.-S. and White,P.A. TITLE Direct Submission JOURNAL Submitted (06-FEB-2012) School of Biotechnology & Biomolecular Sciences, University of New South Wales, Anzac Parade, Sydney, NSW 2052, Australia REMARK Sequence update by submitter COMMENT On Feb 6, 2012 this sequence version replaced GQ845024.1. FEATURES Location/Qualifiers source 1..7562 /organism="Norovirus Hu/GII.4/Rathmines/NSW287R/2007/AUS" /mol_type="genomic RNA" /strain="Hu/GII.4/NSW287R/2007/AUS" /host="Homo sapiens" /db_xref="taxon:676036" /country="Australia" /collection_date="2007" /note="genotype: GII.4" 5'UTR 1..4 CDS 5..5104 /note="ORF1" /codon_start=1 /product="non-structural polyprotein" /protein_id="ACW19926.2" /translation="MKMASNDASAAAVANSNNDTAKSSSDKMFSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEVVVSYSAKDGVSGLPELFTVRQPE ETNTAFSVPPLNQRENKDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK LRPLNIINILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDFELQGPED LVVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIRLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLIDTMKVGRQLKDVKTM PELKQALKNISINKCQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSKPQVENTEEATNKDGC PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGGEGEATLEGGDSKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD STQQRSVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5085..6707 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="ACW19927.1" /translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRNYTMNLAALNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTKGDGSTRGHKATVYTGSADFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6707..7513 /note="VP2" /codon_start=1 /product="minor capsid protein" /protein_id="AEZ56469.1" /translation="MAGALFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARITTYNAGRFSSPQPSGALPGRINLRAPTPARGSSSTSS NSSTATSIYSNQTASTRLGFAAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV" 3'UTR 7514..7562 ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga 61 caccgcaaaa tcttcaagtg acaaaatgtt ttctagcatg gctgtcactt ttaaacgagc 121 cctcggggcg cggcctaaac agcccccccc gagggaaata ccacaaagac ccccacgacc 181 acctactcca gaactggtca aaaagatccc tcctcccccg cccaacgggg aggatgaagt 241 agtggtttct tatagtgcca aagatggcgt ttccggttta cctgagcttt tcaccgtcag 301 gcaaccggaa gaaaccaata cggctttcag tgtccctcca ctcaaccaga gggagaataa 361 agatgctaag gaaccactga ctggaacaat tctggaaatg tgggatggag aaatctacca 421 ttatggcctg tatgttgagc gaggtcttgt gctgggtgtg cacaaaccac cagctgccat 481 aagcctcgcc aaggtcgaac taacaccact ctccttgttc tggagacctg tgtacactcc 541 ccagtacctc atctctccag acactctcaa gaaattacac ggagaaacgt ttccctacac 601 agcctttgac aacaattgct atgccttttg ttgctgggtc ctggatctaa atgactcgtg 661 gctgagtagg agaatgatcc agagaacaac tggcttcttc agaccctacc aagactggaa 721 taggaaaccc ctccccacta tggatgattc caaattaaag aaggtagcta acatattcct 781 gtgcaccctg tcttcgctat tcaccagacc cataaaagac ataataggaa agttaaggcc 841 tctcaacatc atcaacatcc tggcttcatg tgattggact ttcgcaggca tagtggagtc 901 cttgatactc ttggcagagc tctttggagt cttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttactcggtg atttcgagtt acaaggacct gaggaccttg tagtggagct 1021 cgtccctgta gtaatggggg gaattggtct ggtgctagga ttcaccaaag agaagattgg 1081 aaaaatgttg tcatctgctg cgtccacctt gagagcttgt aaagatcttg gtgcatatgg 1141 gctagagatc ctaaagttag tcatgaagtg gttcttcccg aagaaagagg aggcaaatga 1201 actggctatg gtgagatcca tcgaggatgc agtactggac cttgaggcaa ttgaaaacaa 1261 ccatatgacc accttgctca aagacaaaga cagtctggca acctacatga gaacccttga 1321 cctcgaggaa gagaaagcca gaaaactctc aaccaaatct gcttcacctg acatcgtggg 1381 cacaatcaac gcccttctgg cgagaatcgc cgctgcacgc tccctggtgc accgagcgaa 1441 ggaggagctt tccagcagac caagacctgt agtcttgatg atatcaggca gaccagggat 1501 agggaaaacc caccttgcta gggaagtggc taagagaatc gcagcctccc tcacaggaga 1561 ccagcgtgta ggcctcatcc cacgcaatgg cgtcgatcac tgggatgcgt acaaggggga 1621 gagggtcgtc ctatgggacg actatggaat gagcaacccc atccacgacg cccttaggct 1681 gcaagaactc gctgacactt gcccccttac tctaaattgt gacaggattg agaataaagg 1741 aaaggtcttt gacagcgatg tcatcattat cactactaat ctggccaacc cagcaccact 1801 ggactatgtc aactttgaag cgtgctcgag gcgcatcgat ttccttgtgt atgcagaagc 1861 ccccgaggtc gaaaaggcga agcgtgactt cccgggccaa cctgacatgt ggaaaaacgc 1921 ttttagttct gatttctcac acataagatt ggcactggct ccacaaggtg gctttgataa 1981 gaacgggaac accccacacg ggaagggcgt catgaagact ctcaccactg gctccctcat 2041 tgcccgggca tcagggctgc tacatgagag attggatgag tttgaactac agggcccagc 2101 tcttaccacc ttcaactttg accgcaacaa agtgcttgcc ttcaggcagc ttgctgctga 2161 aaacaaatat gggttgatag acacaatgaa agttgggagg cagctcaagg atgtcaaaac 2221 tatgccagaa cttaaacaag cactcaaaaa catctcaatc aataagtgcc agattgtgta 2281 tagtggttgc acctacacac ttgagtctga tggcaagggc aatgtgaaag ttgacagagt 2341 tcagagcacc tccgtacaga ccaacaatga gctggctggc gccctgcacc atctgaggtg 2401 cgccagaatc aggtactatg tcaagtgtgt ccaggaggcc ctgtattcta tcatccagat 2461 tgctggggct gcatttgtca ccacgcgcat catcaagcgt gtgaacattc aagacttatg 2521 gtccaagcca caagtggaaa acacagagga ggctaccaac aaggacgggt gcccaaaacc 2581 caaagatgat gaggagttcg tcatttcatc tgacgacatt aaaactgagg gtaagaaagg 2641 gaagaacaag actggccgtg gcaagaagca cacagccttc tcaagtaaag gtctcagtga 2701 tgaagagtat gatgagtaca agagaattag agaggaaagg aatggcaagt actccataga 2761 agagtacctt caggacaggg acaaatatta tgaggaggtg gccattgcca gggcgaccga 2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttca gaccaacaag 2881 gaaacaacgc aaggaagaaa gagcttctct cggtttagtc acaggttctg aaattaggaa 2941 aagaaaccca gaagacttca agcccaaggg gaaactatgg gctgacgatg acagaagtgt 3001 ggactacaat gagaaactca gttttgaggc cccaccaagc atctggtcaa ggatagtcaa 3061 ctttggttca ggttggggct tctgggtctc ccctagcctg ttcataacat cgacccacgt 3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aaacaaattc aggtacacaa 3181 gtcaggcgaa ttctgtcgct tgaggttccc aaaaccaatc aggactgatg tgactggcat 3241 gatcctggaa gaaggtgcgc ccgaaggcac cgtggtcaca ctactcatca aaaggtctac 3301 tggagaactc atgcccctag cagctagaat ggggacccat gcaaccatga agattcaagg 3361 gcgcactgtt ggaggccaga tgggcatgct tctgacagga tccaacgcca aaagcatgga 3421 tctaggcacc acaccaggtg attgcggctg tccctacatc tacaagagag gaaatgacta 3481 tgtagtcatt ggagtccaca cggctgccgc tcgcggggga aacactgtca tatgtgccac 3541 ccaggggggc gagggggaag ctacacttga aggtggtgac agtaagggaa catactgtgg 3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaaaacca aattctggag 3661 atcatccaca gcaccactcc cacctggcac ctatgaacca gcctaccttg gtggcaagga 3721 ccccagagtc aagggtggcc cttcgttgca gcaagtcatg agggaccagc tgaaaccatt 3781 tacagaaccc aggggtaagc caccaaagcc aagtgtgtta gaagctgcca agaaaaccat 3841 catcaatgtc cttgaacaaa caattgaccc acctgagaag tggtcgttcg cacaagcttg 3901 cgcgtccctt gacaagacca cttctagcgg ccatccgcac catatgcgga aaaacgactg 3961 ctggaacggg gagtccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat 4021 gtttgaagaa gggaaaaaca tgaccccagt ctacacaggt gcacttaagg atgaattagt 4081 caaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct ctgatttagc 4141 aaccatgatc cggtgtgctc gagcattcgg aggcctaatg gatgaactca aagcacactg 4201 tgtcacactt cctatcagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga 4261 gaagcattcc aggtacagat accactatga tgctgattac tctcggtggg attcaacaca 4321 acagagaagc gtgctggcag ctgctctaga aatcatggtt aaattctcct cagaaccaca 4381 tttggcccag gtagtcgcag aagaccttct ttctcctagc gtggtggatg tgggtgactt 4441 cacaatatca atcaacgagg gtcttccctc tggagtgccc tgcacctccc aatggaactc 4501 catcgcccac tggcttctca ctctctgtgc actctccgaa gtcacaaatt tgtccccaga 4561 catcatacag gctaattctc tcttctcctt ctatggtgat gatgaaattg ttagtacaga 4621 cataaaatta gacccagaga agttgacagc aaagcttaag gaatatgggt tgaaaccaac 4681 ccgccctgac aaaactgaag gacctcttgt tatttctgaa gacttagatg gtttgacttt 4741 cctgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagctc 4801 aatactcagg caaatgtact ggactagggg ccccaaccat gaagatccat ctgaatcaat 4861 gattccacac tctcagagac ccatacaatt gatgtcctta ctgggagagg ccgcactcca 4921 cggcccaaca ttctacagta aaatcagcaa attagtcatt gcagagctaa aagaaggtgg 4981 tatggacttt tacgtgccca ggcaagagcc aatgttcaga tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 atgacgccaa cccatctgat gggtccgcag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggcttt ggagcccgtt gtcggtgccg ctattgcggc gcctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtggg gagttcacag 5281 tatcccctag aaacgctcca ggcgaaatac tatggagcgc gcccttaggc cctgatctga 5341 atccctacct atctcatttg gccagaatgt ataatggtta tgcaggtggt tttgaagtgc 5401 aggtgatcct cgcggggaac gcgttcaccg ccggaaaaat tatatttgca gcagtcccac 5461 caaattttcc aactgaaggc ttgagcccca gccaggttac tatgttcccc cacataatag 5521 tagatgttag acaattggaa cctgtgttga tccccttacc tgatgttagg aataacttct 5581 accattataa tcagtcaaat gattctacca ttaaattgat agcaatgctg tatacaccac 5641 ttagggctaa taatgctggg gaagatgtct tcacagtctc ttgtcgagtc ctcacgaggc 5701 catcccccga ttttgatttc atatttttgg tgccacctac agttgagtca agaactaaac 5761 catttactgt cccaatctta actgttgaag aaatgactaa ttcaagattc cccattcctt 5821 tggaaaagtt gttcacgggt cccagcggtg cctttgttgt tcagccacaa aatggcagat 5881 gcacgactga tggcgtgctc ctaggcacca cccaactgtc tcctgtcaac atctgcacct 5941 tcagagggga tgtcacccac attgcaggtt ctcgtaacta cacaatgaat ttggctgctc 6001 taaattggaa caattatgac ccaacagaag aaattccagc ccctctggga actccagatt 6061 tcgtgggaaa gatccaaggt gtgctcactc aaaccacaaa gggagatggc tcgacccgtg 6121 gccataaagc tacagtttac actgggagtg ccgacttcac tccaaagctg ggcagtgttc 6181 aattcagcac tgatacagaa aatgattttg aaactcacca aaacacaaaa ttcaccccag 6241 tcggtgtcat ccaggatggc agcaccaccc accgaaatga accccaacaa tgggtgctcc 6301 caagttattc aggtagaaat gtccataatg tacacctagc ccctgctgta gcccccactt 6361 ttccgggtga acaacttctt ttcttcaggt ccactatgcc cggatgcagc gggtatccca 6421 acatggattt ggattgccta ctcccccagg agtgggtgca gcacttctac caagaggcag 6481 ccccagcaca atctgatgtg gctctattga gatttgtgaa tccagacacg ggtagggtcc 6541 tgtttgagtg caaacttcat aaatcaggct atgtcacagt ggctcacacc ggccagcacg 6601 atttggtcat cccccccaat ggctatttta ggtttgattc ctgggttaat caattctaca 6661 cacttgcccc catgggaaat ggaacggggc gtagacgtgc tttataatgg ctggagcttt 6721 atttgctgga ttggcatctg atgtccttgg ctctgggctt ggttccctga tcaatgctgg 6781 ggctggggct atcaaccaaa agattgattt tgaaaataac agaaaattgc agcaagcttc 6841 cttccagttt agcagtaatc tacaacaggc ttcctttcaa catgacaaag agatgctcca 6901 agcacaaatt gaggccacta aaaagttgca acaggaaatg atgagagtca aacaggcaat 6961 gctcttagaa ggtggattct ctgaaacaga tgcagcccgt ggggcaatca acgcccccat 7021 gacaaaggct ttggactgga gcggaacaag gtactgggcc cctgatgcta ggattacaac 7081 atacaatgcg ggccgctttt cctcccctca accttcgggg gcactgccag gaagaatcaa 7141 tctcagggct cctacccccg ctcggggctc ctccagcaca tcttctaatt cttctactgc 7201 tacttctata tattcaaatc aaactgcttc aacgagactt ggttttgcag ctggttctgg 7261 caccaatgtc tcgagtctcc cgtcaactgc aaggactagg agttgggttg aggatcaaaa 7321 cagaaatttg tcacctttca tgaggggggc tcacaacata tcttttgtca ccccaccatc 7381 tagcagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg 7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgta ggcgagggga 7501 gtcacgggtg taatgtgaaa agacaaaaat tgattatctt ttatttttct ttagtgtctt 7561 tt //