Typing tool
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Typing tool
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Complete norovirus genomes
| GQ413969 | GII.4 Osaka | |
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| GII.P4 Hunter |
ORF1: 1..825
ORF2: 806..2428
ORF3: 2428..3234
LOCUS GQ413969 3287 bp RNA linear VRL 24-JUL-2016
DEFINITION Norovirus Hu/GII.4/Riviera1635/2008/US polymerase gene, partial
cds; and major capsid protein and minor capsid protein genes,
complete cds.
ACCESSION GQ413969
VERSION GQ413969.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Riviera1635/2008/US
ORGANISM Norovirus Hu/GII.4/Riviera1635/2008/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3287)
AUTHORS Vega,E. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2009) National Calicivirus Laboratory, Centers
for Disease Control and Prevention, 1600 Clifton Rd. MSG04,
Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..3287
/organism="Norovirus Hu/GII.4/Riviera1635/2008/US"
/mol_type="genomic RNA"
/strain="Hu/GII.4/Riviera1635/2008/US"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:670198"
/country="USA"
/collection_date="Oct-2008"
CDS <1..825
/codon_start=1
/product="polymerase"
/protein_id="ACV41092.1"
/translation="YHYDADYSRWDSTQQRAVLASALEIMVKFSSEPHLAQVVAEDLL
SPSVVDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLF
SFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVT
RDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAF
YSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 806..2428
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="ACV41093.1"
/translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLERLYTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSAVNICTFRGDVTHIAGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTGRDGSTRGHKATVLTGSADFAPKLGRVQFATDTDNDFESGENTKFTPVGVIQDG
STTHRNEPQQWVLPNYSGRTGHNVHLAPAVAPTYPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVRHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKPGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2428..3234
/note="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="ACV41094.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQSQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRTPTPARGSSSTSS
NASTATPIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTHRQPLFAHIRRRGESRV"
3'UTR 3235..3287
ORIGIN
1 taccattatg atgccgacta ctctcggtgg gattcaacgc aacaaagagc cgtgttagca
61 tcagctttag aaatcatggt taaattctcc tcagaaccac atttggccca ggtagtcgca
121 gaagaccttc tctctcccag cgtggttgat gtgggcgact tcaaaatatc aatcaacgag
181 ggtcttccct ctggggtgcc ctgcacctct caatggaatt ccatcgccca ctggcttctc
241 actctctgtg cgctctctga agttacaaac ttgtcccctg acatcataca ggctaattct
301 ctcttctcct tctatggcga tgatgaaatc gttagtacag atataaaatt agatccagag
361 aaattgacag cgaagctcaa agaatacggg ttgaaaccaa cccgccctga caaaactgaa
421 ggaccccttg tcatttctga agatctgaat ggtctgacct tcctgcggag aactgtgacc
481 cgcgatccag ctggttggtt tggaaaactg gagcagagtt caatactcag acaaatgtac
541 tggactaggg gccccaacca tgaagaccca tctgaaacaa tgattccaca ctcccaaagg
601 cccatacaat tgatgtccct gctgggagag gccgcactcc acggcccagc attctacagc
661 aaaatcagca agttggttat tgcagagcta aaagaaggtg gcatggattt ttacgtgccc
721 agacaagagc caatgtttag atggatgaga ttctcagatc tgagcacgtg ggagggcgat
781 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg aatgacgcca acccatctga
841 tgggtccaca gccaacctcg tcccagaggt caacaatgag gttatggctt tggagcccgt
901 tgtaggtgcc gctattgcgg cacctgtagc gggccaacaa aatgtaattg acccctggat
961 tagaaataat tttgtacaag cccctggtgg agagtttaca gtgtccccta gaaacgctcc
1021 aggtgagata ctatggagtg cgcccttggg ccctgatttg aacccttacc tttctcattt
1081 ggccagaatg tacaatggtt atgcaggtgg ttttgaggtg caggtaatcc ttgcggggaa
1141 cgcgttcacc gccgggaaaa tcatatttgc agcagtccca ccaaactttc caactgaagg
1201 cttgagcccc agccaggtta ctatgttccc ccacataata gtggatgtta ggcaattgga
1261 acctgtgtta atccccttac ctgatgttag gaacaatttc tatcactaca accaatcaaa
1321 tgaccctacc atcaaattga tagcaatgct gtacacacca cttagggcca ataatgccgg
1381 ggatgatgtc ttcacagtct cttgtcgagt actcacgagg ccatcccctg attttgattt
1441 catatttctg gtaccgccaa cagttgaatc aagaaccaaa ccatttactg tcccaatctt
1501 aactgttgag gaaatgacca attcaagatt ccccattcct ttggagaggt tgtacacggg
1561 ccccagcagt gcttttgttg tccaaccaca aaacggcagg tgcacgactg atggcgtgct
1621 cttaggcacc acccagctgt ctgctgtcaa catctgcact tttagaggag atgttactca
1681 cattgcaggc tctcgcaatt atacaatgaa tttggcctct caaaattgga gcaactatga
1741 cccaacagaa gaaatcccag cccccctggg gaccccagat tttgtgggaa agatccaagg
1801 catgctcacc caaaccacag gaagagatgg ctcgacccgc ggccacaaag ccacagtgct
1861 cactgggagt gccgactttg ccccaaaatt gggcagggtc caattcgcca ctgacacaga
1921 caacgatttc gagtctggcg aaaacacgaa attcacccca gtcggcgtca tccaggatgg
1981 ttccaccacc caccggaatg aaccccaaca atgggtgctc ccaaattact caggtagaac
2041 tggtcataat gtgcatctag cccctgccgt tgcccccact tacccgggtg agcaactcct
2101 tttcttcagg tctactatgc ccggatgcag cgggtatccc aacatggatt tggattgcct
2161 actcccccag gagtgggtgc ggcacttcta ccaagaggca gctccggcac aatctgacgt
2221 ggctctattg agatttgtga atccagacac gggcagagtc ctgtttgagt gcaaacttca
2281 taaaccaggc tatgtcacag tggctcacac cggccagcat gatttggtca tcccccccaa
2341 tggctatttt aggtttgatt cctgggttaa tcaattctac acacttgccc ccatgggaaa
2401 tggaacgggg cgtagacgtg ctttataatg gctggagctt tctttgctgg attggcatct
2461 gatgtccttg gctctggact tggttcccta atcaatgctg gggctggggc tatcaaccaa
2521 aagattgatt ttgaaaataa cagaaagttg cagcaagctt ccttccagtt tagcagtaat
2581 ctacaacagg cttcctttca acatgataaa gagatgctcc aatcacaaat tgaggctact
2641 aaaaagttgc aacaggaaat gatgaaagtc aaacaggcaa tgctcttaga aggtggattc
2701 tctgaaacag atgcagcccg tggggcaatt aatgccccca tgacaaaggc tttggactgg
2761 agcggaacaa ggtactgggc ccctgatgct aggactacaa catacaatgc aggccgcttt
2821 tccacccctc aaccttcggg ggcactgcca ggaagaatta accctaggac tcccacccct
2881 gctcggggct cctccagtac atcttctaat gcttctactg ctactcctat atactcaaat
2941 caaactgttt caacgagact tggttctaca gctggttctg gcaccaatgt ctcgagtctc
3001 ccgtccactg caaggactag gagttgggtt gaggatcaaa acagaaattt gtcacctttc
3061 atgagggggg ctcacaacat atcgtttgtc accccaccat ctagcagatc ctctagccaa
3121 ggcacagtct caaccgtgcc taaagaagtt ttggactcct ggactggtgc tttcaacacg
3181 cacaggcagc ctctcttcgc tcacattcgt aggcgagggg agtcacgggt ttaatgtgaa
3241 aagacaaaat tgattatctt tccttttctt tttctttagt gtctttc
//