Typing tool
|
Complete norovirus genomes
FJ537138 | GII.4 | ||
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GII.P39 |
ORF1: 5..5104 ORF2: 5085..6704 ORF3: 6704..7510LOCUS FJ537138 7580 bp RNA linear VRL 02-NOV-2009 DEFINITION Norovirus Hu/GII.4/CHDC4871/1977/US, complete genome. ACCESSION FJ537138 VERSION FJ537138.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/CHDC4871/1977/US ORGANISM Norovirus Hu/GII.4/CHDC4871/1977/US Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7580) AUTHORS Bok,K., Abente,E.J., Realpe-Quintero,M., Mitra,T., Sosnovtsev,S.V., Kapikian,A.Z. and Green,K.Y. TITLE Evolutionary dynamics of GII.4 noroviruses over a 34-year period JOURNAL J. Virol. 83 (22), 11890-11901 (2009) PUBMED 19759138 REFERENCE 2 (bases 1 to 7580) AUTHORS Bok,K., Abente,E.J., Realpe-Quintero,M., Mitra,T., Sosnovtsev,S.V., Kapikian,A.Z. and Green,K.Y. TITLE Direct Submission JOURNAL Submitted (10-DEC-2008) Laboratory of Infectious Diseases, Epidemiology Section, Norovirus Gastroenteritis Unit, National Institute of Allergy and Infectious Diseases, National Institutes of Health, 50 South Drive, BLD 50, Room 6316, Bethesda, MD 20892, USA FEATURES Location/Qualifiers source 1..7580 /organism="Norovirus Hu/GII.4/CHDC4871/1977/US" /mol_type="genomic RNA" /strain="Hu/GII.4/CHDC4871/1977/US" /host="Homo sapiens" /db_xref="taxon:660659" /country="USA" /collection_date="1977" /note="genotype: GII.4" CDS 5..5104 /note="ORF-1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="ACT76150.1" /translation="MKMASNDASAAAAANGNNDTAKSSSDGVLSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELIKKVPPPPPNGEDEPVVSYNAKNGVSGLPELSTVRQPD ENNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEASELAMVRSIEDAVLDLEAIENNHLTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLAREL AKKIATTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPDVEK AKRDFPGQPDMWKNAFSPDFSHIKLVLAPQGGFDKNGNTPHGKGVMKTLTIGSLIARA SGLLHERLDEYELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGGQLKGVRTM PELKQALKNISIKKCQIVYGGSTYTLESDGKGSVRVDKVQSATVQTNNELAGALHHLR CARVRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQLEDTEEATGKDGC PKPKDDEEFVVSSDDIKVEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGTQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRIKGGPSLQQVMRDQLKPFTEP RGKQPKPSVLEAAKRTIINVLEQTIDPPQKWTFAQACASLDKTTSSGHPHHIRKNECW NGDSFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD STQQRAILAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTDLSPDIVQANSLFSFYGDDEIVSTDIKMDPEKLTAKLK EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPSETMIPHSQRPTQLMSLLGEAALHGPAFYSKISKLVITELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5085..6704 /note="structural protein; ORF-2" /codon_start=1 /product="VP1" /protein_id="ACT76151.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLSRMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQAHDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT QLSAVNICNFRGDVTRVGISHDYTMNLVSQNWNNYDPTEEIPAPLGTPDFVGKIQGLL TQTTRADGSTRAHKATVSTGSVHFTPKLGSVQFTTDTNNDFQTGQNTKFTPVGVIQDG DHHQNEPQQWVLPNYSGTSGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC LLPQEWVLHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGPYDLVI PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6704..7510 /note="structural protein; ORF-3" /codon_start=1 /product="VP2" /protein_id="ACT76152.1" /translation="MAGPFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQGLMKVKQAVLLEGGFSTTDAARGAIN APMTKALDWSGTRYWAPDARVTTYNAGRFSTPQPLGALPGRTNPRVPAPARSSPSSLS NAPTATSVYSNQTVSTRLGSSAGSGAGVSSLPSTARTRSWVEDQNRNLSPFMRGALNT SFVTPPSSRSSNQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgctaacg gcaacaacga 61 caccgcaaaa tcttcaagtg acggagtact ttctagtatg gctgtcactt ttaaacgagc 121 ccttggggcg cggcctaagc agccgccccc gagggagata ccacaaagac ccccacgacc 181 gcccactccg gaattgatca agaaggtccc tccccccccg cccaatgggg aggacgaacc 241 agtggtttct tacaacgcca agaatggcgt ttctggactg cctgagcttt ccactgtcag 301 gcaaccagat gagaacaaca cggcatttag tgtcccccca cttaaccaaa gggagaacag 361 ggatgccaag gagccactaa ctggaacaat cctggagatg tgggatgggg agatctacca 421 ttatggcttg tatgtggagc gaggcctggt gcttggcgtg cacaaaccgc cagcagctat 481 tagcctcgct aaggtcgaac tgacaccact ctctttgttt tggagacccg tctacactcc 541 ccagtacctc atctccccag acacccttag gagattgcat ggtgaatcgt tcccttacac 601 agcctttgac aacaactgtt atgccttctg ttgctgggtt ctggacctga acgattcatg 661 gctgagcagg aggatgatac agaggacaac tggcttcttc agaccttacc aggattggaa 721 caggaagccc cttcccacca tggatgattc caaattaaag aaagtggcca acatattcct 781 gtgtgctttg tcttcactat tcactagacc tatcaaggac ataataggaa agctaagacc 841 ccttaacatt ctcaatattt tagcttcatg tgattggacc tttgcaggca tagtggaatc 901 tctaatcctc ttggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttactgggtg actacgaact acaggggcct gaggacctcg cagtagagct 1021 agtgccagta gtaatggggg gaataggttt ggtgctagga tttaccaaag aaaagattgg 1081 gaagatgttg tcatctgccg cgtccacact gagggcctgt aaagaccttg gtgcatatgg 1141 gctggagatc ttaaaactag tcatgaagtg gttcttcccg aagaaagagg aggcgagtga 1201 gttggccatg gtgagatcca tcgaggacgc ggtgttggac ctcgaagcaa ttgaaaacaa 1261 ccatttgacc accctgctta aggacaagga cagcctggca acttacatga gaactcttga 1321 ccttgaggaa gagaaagcca ggaaactctc aaccaagtct gcctcacctg acatcgtggg 1381 tacaatcaat gctctcctgg cgaggatcgc ggctgcccgt tccctggtac atcgagcaaa 1441 ggaagaactt tccagcaggc cgagacccgt tgttgtgatg atatcaggaa aaccaggaat 1501 agggaagacc caccttgcca gagagctggc taagaagatc gcaaccaccc ttacgggaga 1561 ccagagggtg ggcctcatcc cacgcaatgg tgttgaccac tgggacgcgt acaagggaga 1621 gagggtcgtc ctctgggatg actacggtat gagtaacccc atccacgatg ccctcaggtt 1681 acaggagctt gctgacactt gccccctaac actgaattgt gataggattg agaacaaagg 1741 taaagttttt gacagtgatg ctataattat caccactaac ttggccaacc cagcaccact 1801 ggactatgtc aactttgagg cgtgctcgag gcgcattgat ttcctcgtgt acgccgaagc 1861 ccctgatgtt gagaaggcga agcgcgactt cccaggccaa cctgatatgt ggaagaatgc 1921 cttcagccct gacttctctc acataaagct ggtgctggcc ccgcagggtg gctttgacaa 1981 gaacggcaac accccacatg ggaagggtgt catgaagacc cttaccatcg gttctctcat 2041 cgcccgtgct tcaggactcc tccatgaaag gctggatgag tacgagctac aaggcccagc 2101 cctcacaacc ttcaactttg accgaaacaa agtgctcgct ttcaggcagc ttgctgctga 2161 aaacaagtac gggttgatgg atacgatgag agttggaggg caactcaagg gcgtcagaac 2221 catgccagag ctcaagcaag cactcaagaa catctcaatt aagaagtgcc agatagtgta 2281 tggtggcagc acctacacac ttgaatctga tggcaagggt agtgtgaggg ttgacaaggt 2341 tcagagtgcc actgtgcaaa ccaacaacga actagccggc gccctgcatc atctcaggtg 2401 cgccagggtc aggtactatg tcaagtgtgt ccaggaagct ctgtactcca tcattcaaat 2461 tgcaggggct gcgtttgtca ccacgcgcat tgtcaagcgc atgaacatac aggatctatg 2521 gtctaagcca caactggagg acacggaaga agccactggc aaagacggat gcccaaaacc 2581 caaagatgat gaggagtttg ttgtttcatc cgacgacatc aaggttgagg gcaagaaagg 2641 gaagaacaag actggtcgcg gcaagaagca cacagccttc tcgagtaaag gtctcagtga 2701 tgaggagtac gacgagtaca aaagaatcag ggaggaaaga aacggcaagt actctataga 2761 ggaatacctc caagacagag acaagtatta cgaggaggtt gccatcgcca gggcgactga 2821 agaggatttc tgtgaagagg aagaggccaa gatccgacag agaatcttta gaccaacaag 2881 gaaacaacgc aaggaggaga gggcttctct cggtctagtc acaggctctg aaatcaggaa 2941 aagaaaccca gatgacttca aacccaaggg aaagttgtgg gccgatgacg acagaagtgt 3001 cgattacaac gagaagctca gttttgaagc cccaccaagc atctggtcaa ggatagtcaa 3061 ctttggttcg ggttggggtt tctgggtttc ccccagtctg ttcataacat caactcatgt 3121 tataccccag ggcacacagg agttcttcgg agtgtccatc aagcaaatcc agatacacaa 3181 atcaggcgaa ttctgccgcc tgaggttccc aaaaccaatc aggaccgatg tgacaggcat 3241 gatcttagag gagggtgccc ccgaaggcac cgtggccaca ctactcatca agagaccaac 3301 tggtgagctc atgcctttag cagccaggat gggcactcat gcaaccatga agatccaagg 3361 tcgcactgtt ggaggccaaa tgggtatgct cctgacaggg tccaatgcca aaagtatgga 3421 cctgggcacc acacctggcg actgtggttg tccctatatc tacaagagag ggaacgacta 3481 cgtggtcatc ggggttcata cggctgctgc ccgaggaggg aacactgtca tatgtgccac 3541 ccagggaagt gaaggtgagg ccacacttga gggcggtgac aacaaaggca cctactgtgg 3601 cgctccgatc ctaggtccag gaagtgcccc aaagctcagc accaaaacca aattctggag 3661 atcatccaca gcaccactcc cacctggcac ctatgaacca gcctacctcg gtggtaagga 3721 ccccagaatc aagggtggcc cctcactaca acaagttatg agggaccagt tgaaaccatt 3781 cacggaacca agaggcaaac aaccaaagcc aagtgtgttg gaagctgcca agagaaccat 3841 cattaacgtc cttgaacaaa caatagaccc acctcagaaa tggacgtttg cgcaagcttg 3901 cgcgtctctt gacaagacca cctccagtgg tcacccacac cacatacgga agaatgaatg 3961 ctggaatgga gattccttca caggcaagtt ggcagatcag gcctcaaagg ccaacttgat 4021 gtttgaggag gggaagaaca tgactccagt ttacacaggt gccctcaagg atgagttggt 4081 caaaactgac aagatatatg gcaagattaa gaagagactg ctttggggat cagacctggc 4141 aaccatgatc cggtgtgccc gggcgttcgg gggcctaatg gatgagctca aggcccactg 4201 tgtcacactt cctgtcagag ttggcatgaa catgaatgag gatggcccca tcatctttga 4261 aaagcattcc aggtatagat atcactatga tgcagactat tctagatggg actcaacaca 4321 acaaagagct atattggccg cagccctaga gatcatggtc aaattctccc cagagccaca 4381 cttagcccag atagttgcag aagaccttct atcccccagc gtgatggacg tgggtgattt 4441 caagatttca atcaacgagg gcctcccctc tggggtacct tgcacttcac aatggaactc 4501 tatcgcccac tggctcctca ccctctgtgc tctctctgaa gtcacggatc tctcccctga 4561 cattgttcag gccaactctc tcttctcttt ctatggtgat gatgaaattg tgagcacaga 4621 tataaaaatg gacccagaaa aactgacggc aaagctaaag gaatatggac tgaagccaac 4681 ccgccctgac aagactgaag gacctctaat catttctgag gatctaaatg gtttgacctt 4741 cctgcgaagg actgtaaccc gcgatccagc tggttggttt ggtaaattgg aacaaagctc 4801 aatactcagg cagatgtact ggaccagggg ccccaaccat gaggacccat ctgaaacaat 4861 gataccacat tcccaaaggc ccacgcagtt gatgtctttg ctgggtgagg ctgcactgca 4921 cggcccagca ttctacagca agatcagtaa actagtcatc acagagttaa aggaaggtgg 4981 catggatttt tacgtgccca gacaagagcc gatgttcagg tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 gtgacgccaa cccatctgat gggtccgcag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggcttt ggagcctgtt gttggtgccg ccattgcagc acctgtagca ggccaacaaa 5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagtttacag 5281 tgtcccctag aaacgctcca ggtgagatac tatggagcgc gcccttgggc cctgatttga 5341 acccctatct ttctcacctg tccagaatgt acaatggtta tgcaggtggt tttgaagtgc 5401 aagtaatcct cgcagggaac gcgttcactg ccgggaaagt catatttgca gcagttccac 5461 caaattttcc aactgaaggt ctaagcccca gccaggttac tatgttcccc catataattg 5521 tagatgttag gcaactggaa cctgtattga tccccctacc tgatgttagg aataatttct 5581 atcattataa tcaagcacat gattctaccc taaaattgat agcaatgttg tatacaccac 5641 tcagagctaa taatgccgga gatgatgtct ttacagtctc ttgtcgagtc ctcacgagac 5701 catcccccga ttttgatttt atattcctgg tgccacccac agttgaatca agaactaaac 5761 catttactgt cccaatctta actgttgagg aaatgtccaa ttcaagattc cccattcctt 5821 tggaaaagct gtacacgggt cctagcagtg cttttgttgt ccaaccacaa aatggcagat 5881 gcacgactga tggcgtgctc ttaggcacta ctcagctgtc agctgtcaat atctgcaact 5941 tcagggggga tgtcacccgt gttgggatca gccatgatta tacaatgaat ttggtgtccc 6001 aaaattggaa taattatgac ccaacagaag aaattccagc tcccctggga acgccagact 6061 ttgtgggaaa gatccaaggt ttgctcaccc aaaccacaag agcggacggt tcgacccgcg 6121 cccacaaagc tacagtgagc actgggagtg tccacttcac tccaaagctg ggtagtgttc 6181 aattcaccac cgatacgaac aatgatttcc aaactggcca aaacacaaaa tttaccccag 6241 ttggtgtcat ccaagacggt gatcaccatc agaatgaacc ccaacaatgg gtactcccaa 6301 attactcagg cacatctggt cacaatgtgc atctggcccc tgccgttgcc cccactttcc 6361 cgggtgagca gcttcttttc tttaggtcca ctatgcccgg gtgtagcggg taccccaaca 6421 tgaatttgga ttgcctactc ccccaggagt gggtgctgca cttttaccag gaagcagccc 6481 cagcacaatc cgatgtggct ctgttgagat ttgtgaatcc agacacaggt agggttctgt 6541 ttgagtgcaa actccataaa tcaggctata tcacagtggc tcacaccggc ccgtatgatt 6601 tggttatccc ccccaatggt tacttcagat ttgattcttg ggtcaaccag ttctacacac 6661 tcgcccccat gggaaatgga acggggcgca ggcgtgcatt ataatggctg gacctttctt 6721 tgctggattg gcatctgatg tcctcggttc cggacttggt tctctaatca atgctggagc 6781 tggagccatc aatcaaaaag ttgaatttga aaacaataga aaattacaac aagcttcttt 6841 tcaattcagt agtaatctgc aacaggcttc cttccaacat gataaggaga tgctccaagc 6901 acaaattgag gctactcaaa aattgcaaca aggtttgatg aaggttaaac aggcggtgct 6961 cttagagggt gggttttcca caacagatgc ggcccgtggg gcaatcaacg cccccatgac 7021 aaaggctctg gactggagcg gaacaaggta ctgggccccc gatgccaggg tcacaacata 7081 caatgcaggc cgcttctcca cccctcagcc tttgggggca ttacctggaa ggaccaatcc 7141 tagggttcct gctcctgctc ggagctcccc cagttcactt tccaatgctc ctactgccac 7201 ttctgtgtat tcaaatcaaa ctgtttcaac gagactaggt tcttcagctg gttctggtgc 7261 cggtgtctcg agtctcccgt caactgcaag gactaggagc tgggttgagg accaaaacag 7321 gaatttgtca cctttcatga ggggggctct caacacatca tttgtcaccc ctccatctag 7381 tagatcctcc aaccaaggca cagtctcaac cgtgcctaaa gagattttgg actcctggac 7441 tggcgctttt aacacgcgca ggcagcctct cttcgcacac attcgtaagc gaggggagtc 7501 acgggtgtaa tgtgaaaaga caaaattgat tatctttctt ttctttaatg tcttttaaaa 7561 aaaaaaaaaa aaaaaaaaaa //