Typing tool
|
Complete norovirus genomes
FJ537136 | GII.4 | ||
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GII.P12 |
ORF1: 5..5104 ORF2: 5085..6704 ORF3: 6704..7510LOCUS FJ537136 7580 bp RNA linear VRL 02-NOV-2009 DEFINITION Norovirus Hu/GII.4/CHDC3967/1988/US, complete genome. ACCESSION FJ537136 VERSION FJ537136.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/CHDC3967/1988/US ORGANISM Norovirus Hu/GII.4/CHDC3967/1988/US Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7580) AUTHORS Bok,K., Abente,E.J., Realpe-Quintero,M., Mitra,T., Sosnovtsev,S.V., Kapikian,A.Z. and Green,K.Y. TITLE Evolutionary dynamics of GII.4 noroviruses over a 34-year period JOURNAL J. Virol. 83 (22), 11890-11901 (2009) PUBMED 19759138 REFERENCE 2 (bases 1 to 7580) AUTHORS Bok,K., Abente,E.J., Realpe-Quintero,M., Mitra,T., Sosnovtsev,S.V., Kapikian,A.Z. and Green,K.Y. TITLE Direct Submission JOURNAL Submitted (10-DEC-2008) Laboratory of Infectious Diseases, Epidemiology Section, Norovirus Gastroenteritis Unit, National Institute of Allergy and Infectious Diseases, National Institutes of Health, 50 South Drive, BLD 50, Room 6316, Bethesda, MD 20892, USA FEATURES Location/Qualifiers source 1..7580 /organism="Norovirus Hu/GII.4/CHDC3967/1988/US" /mol_type="genomic RNA" /strain="Hu/GII.4/CHDC3967/1988/US" /host="Homo sapiens" /db_xref="taxon:660657" /country="USA" /collection_date="1988" /note="genotype: GII.4" CDS 5..5104 /note="ORF-1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="ACT76144.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDELVVSYSVKDGVSGLPELSTVRQPD EANTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LAKVELTPLSLFWRPVYTPQYLISPDTLKRLHGESFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK AKRDFPGQPDMWKNAFSPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEYELQGPTLTIFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM PELKQALKNISIKRCQIVYSGCTYTLESDGKGSVKVDRVQSATVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETTSKDGC PKPKDDEEFVVSSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRENDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLRPFTEP RGKPPKPSVLEAAKKTIVNVLEQTIDPPQKWSFTQACASLDKTTSSGHPHHIRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISINEGLPSGVPCT SQWNSIAHWLLTLCALSEITNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5085..6704 /note="structural protein; ORF-2" /codon_start=1 /product="VP1" /protein_id="ACT76145.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLSRMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSHDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT QLSAVNICNFRGDVTHIVGSHDYTMNLVSQNWSNYDPTEEIPAPLGTPDFVGKIQGLL TQTTRADGSTRAHKATVSTGSVHFTPKLGSVQFTTDTNNDFQTGQNTKFTPVGVIQDG DHHQNEPQQWVLPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC LLPQEWVLHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGPYDLVI PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6704..7510 /note="structural protein; ORF-3" /codon_start=1 /product="VP2" /protein_id="ACT76146.1" /translation="MAGSFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQDLMKVKQAVLLEGGFSTTDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNPRVPVLSRGPPSTLS NASTATSVYSNQTVSTRLGSSAGSGTSVSSLPSTARTRNWVEDQNRNLSPFMRGALNT SFVTPPSSRSSNQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgccaaca gcaacaacga 61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc 121 cctcggggcg cggcctaaac agcctccccc gagggaaata ccacaaagac ccccacgacc 181 acccacccca gaattggtca aaaagatccc ccctcccccg cccaacgggg aggatgaact 241 agtggtttct tatagtgtca aagatggcgt ttccggtctg cctgagcttt ccactgtcag 301 gcaaccggat gaagccaata cggccttcag tgttccccca ctcaaccaga gggagaatag 361 ggatgccaag gagccactaa ctggaacaat tctggaaatg tgggatggag agatctacca 421 ttatggccta tatgtggagc gaggtcttgt acttggcgtg cacaaaccac cagctgccat 481 cagcctcgcc aaggtcgaac taacaccact ctccttgttt tggagacctg tatacacccc 541 ccagtacctc atctccccag acactctcaa gagattgcac ggagaatcgt tcccctatac 601 agcctttgac aacaattgct atgccttctg ttgctgggtc ttagacttaa acgactcgtg 661 gctgagtagg agaatgatcc agagaacaac tggtttcttt agaccctacc aagattggaa 721 taggaaaccc ctccctacta tggatgactc caaattaaag aaggtagcta acatattcct 781 gtgtgctcta tcttcactgt tcaccaggcc catcaaagac ataataggga aactaagacc 841 tcttaacatc ctcaacatct tagcctcatg tgattggact tttgcaggta tagtggaatc 901 cttgatactc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttgctgggtg attacgagtt acagggccct gaggaccttg cagtggaact 1021 cgttccaata gtgatggggg gaattggttt ggtactagga ttcaccaaag agaagattgg 1081 gaagatgttg tcatctgctg catccacctt aagagcctgt aaagatcttg gtgcatacgg 1141 gctggaaatc ctaaaattag tcatgaagtg gttcttccca aagaaagagg aagcaaatga 1201 gctggctatg gtgagatcca tcgaggatgc ggtgctggac ctcgaggcaa ttgaaaacaa 1261 ccacatgacc accctgctca aagataaaga cagcctggca acctatatga gaacccttga 1321 ccttgaggag gagaaagcca ggaagctctc aaccaagtct gcttcacctg atatcgtggg 1381 cacaatcaac gcccttctgg cgagaatcgc tgctgcacgt tccctggtgc atcgagcgaa 1441 ggaggagctt tccagcagac caagacctgt tgttgtgatg atatcaggca gaccagggat 1501 agggaagacc caccttgcca gggagctggc caagagaatc gcagcttccc tcacaggaga 1561 ccagcgtgtg ggtctcatcc cacgcaatgg cgtcgaccac tgggacgcat acaaggggga 1621 aagggtcgtc ctatgggacg actatggaat gagtaatccc atccatgacg cccttaggtt 1681 acaagaactc gctgacactt gccccctcac tctaaactgt gacaggattg agaacaaagg 1741 aaaggtcttt gacagtgacg ctataattat caccactaat ctggccaacc cagcaccatt 1801 ggactatgtc aactttgaag catgctcgag gcgcatcgat ttcctcgtgt atgcagatgc 1861 ccctgaagtc gagaaggcga aacgtgattt tccaggccaa cctgacatgt ggaagaacgc 1921 tttcagtcct gatttctcgc acataaaact aactctggct ccacagggtg gcttcgacaa 1981 gaatggaaac accccacatg ggaagggcgt catgaagact ctcaccactg gctccctcat 2041 tgcccgagca tcagggctac tccatgagag attagatgag tatgagctgc agggcccaac 2101 tctcaccatt ttcaactttg atcgcaacaa ggtgcttgct tttaggcagc ttgctgctga 2161 aaataaatac gggctgatgg acacaatgaa agttggaaga cagctcaagg atgtcagaac 2221 catgccagag ctcaaacaag cactcaagaa tatttcaatc aagaggtgcc agatagtgta 2281 cagtggatgc acctatacac ttgagtctga tggcaagggc agtgtgaaag ttgacagagt 2341 tcagagcgct accgtgcaga ccaacaacga gctggccggt gccctacacc atctaaggtg 2401 tgccagaatt agatactatg tcaagtgtgt ccaggaggcc ctgtattcca tcatccaaat 2461 tgctggagct gcatttgtca ccacgcgcat cgtcaagcgc atgaatatac aagacctctg 2521 gtccaagcca caagtagaag acacagagga gactaccagc aaggacgggt gcccaaaacc 2581 caaagacgat gaggagttcg tcgtctcatc cgacgacatc aaaactgagg gcaagaaagg 2641 gaagaacaag actggccgtg gcaagaagca cacagccttc tcaagcaaag gtctaagtga 2701 tgaagagtac gatgagtaca agaggatcag agaagaaaga aacggtaagt actccataga 2761 agagtacctt caggaccggg acaagtacta tgaggaggtg gccattgcca gggcgaccga 2821 ggaggacttc tgtgaagagg aggaggccaa gattcggcag aggattttca ggccaacaag 2881 gaaacaacgc aaggaggaga gggcctctct cggtttagtc acaggctctg aaatcaggaa 2941 gaggaaccca gatgatttca agcccaaggg aaaactgtgg gctgatgacg acaggagcgt 3001 agactacaat gagagactca gttttgaggc cccaccaagc atctggtcga ggatagtcaa 3061 ctttggttca ggttggggct tttgggtttc tcccagcctg ttcataacat caactcatgt 3121 cataccccag ggcgcacagg agttcttcgg agtccccatc aaacaaattc agatacacaa 3181 atcgggcgaa ttctgtcgct tgaggttccc aaaaccaatc aggactgatg tgacgggcat 3241 gatcttagaa gaaggtgcgc ccgaaggcac cgtggccaca ctactcatca agaggccaac 3301 tggagaactt atgcccttag cagccagaat ggggacccat gcaaccatga agattcaagg 3361 acgcactgtt gggggccaaa tgggcatgct cctgacagga tccaacgcca aaagtatgga 3421 cctaggcact acaccaggtg actgtggctg tccctacatc tacaagaggg aaaatgacta 3481 cgtggttatt ggagtccaca cggctgccgc tcgtgggggt aacactgtta tatgtgccac 3541 ccaggggagt gaaggagagg ctacacttga aggcggtgac agtaagggaa cctactgtgg 3601 tgcaccaatc ctaggcccag gaagtgcccc aaaactcagc accaagacta aattctggag 3661 atcatctaca acaccactcc cacctggcac ctatgaacca gcctaccttg gtggtaagga 3721 ccccagggtc aagggtggcc cttcattgca acaagttatg agggaccagc tgagaccatt 3781 tacagaaccc aggggcaaac caccaaagcc aagtgtgttg gaggctgcca agaaaaccat 3841 cgtcaatgtc cttgaacaaa caattgatcc acctcagaaa tggtcattca cgcaagcttg 3901 cgcgtccctc gacaagacta cttccagtgg ccacccgcac cacatacgga aaaatgactg 3961 ctggaacggg gaatccttca caggtaagtt ggcagaccag gcttccaagg ccaacctgat 4021 gttcgaagag gggaagaaca tgaccccagt ttacacaggt gcgctcaagg atgagctggt 4081 caaaactgac aaaatttatg gcaagatcaa gaagaggctt ctctggggct cggacttagc 4141 gaccatgatc cggtgcgctc gagcattcgg aggcctaatg gatgaactca aggcacactg 4201 tgttacacta cctgtcagag ttggcatgaa catgaatgag gatggcccca tcatctttga 4261 gaggcattcc agatacaaat accactatga tgctgattac tctcggtggg attcaacaca 4321 acagagggcc gtattagcag cagccctaga aatcatggtt aaattctccc cagaaccaca 4381 tctggcccag atagttgcag aagaccttct ctctcctagt gtgatggatg tgggtgactt 4441 caaaatatca atcaatgagg gcctcccctc tggggtgccc tgcacctccc aatggaattc 4501 catcgcccac tggctcctca ctctctgtgc actctccgaa atcacaaact tgtcccctga 4561 cattatacag gctaattccc tcttctcctt ttatggtgat gatgaaattg tcagtacaga 4621 tataaagttg gacccagaga aattgacagc aaaactcaag gaatacgggt tgaaaccaac 4681 ccgccctgac aagactgagg gaccccttgt tatctctgaa gacttgaatg gtctgacctt 4741 cctgcggagg actgtgaccc gcgacccagc tggctggttt ggaaaattgg aacagagctc 4801 aatacttagg caaatgtact ggactagggg ccccaaccat gaagacccat ctgaaacaat 4861 gataccacac tcccaaagac ccatacaact aatgtcttta ctgggcgagg ccgcactcca 4921 cggcccggca ttctacagca aaattagcaa gctagtcatt gcagagctga aggaaggtgg 4981 catggatttt tacgtgccca ggcaagaacc aatgttcaga tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 gtgacgccaa cccatctgat gggtccgcag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggctct ggagcccgtt gttggtgctg ctattgcagc acctgtagcg ggccaacaaa 5221 atataattga cccctggatt agaaacaatt ttgtacaagc ccctggtggt gagtttacag 5281 tgtcccctag aaacgctcca ggtgagatac tatggagcgc gcccttgggc cctgatttga 5341 acccctatct ttctcatctg tccagaatgt acaatggtta tgcaggtggt tttgaagtgc 5401 aagtaattct cgcggggaac gcgttcaccg ccgggaaagt tatatttgcg gcagttccac 5461 caaactttcc aactgaaggc ttaagcccca gccaggtcac tatgttcccc catataattg 5521 tagatgttag gcaattggaa cctgtgttga tccccctacc tgatgttagg aataatttct 5581 atcattataa tcaatcacat gattctaccc ttaagctgat agcaatgttg tatacaccac 5641 tcagagctaa taatgccggg gatgatgtct tcacagtctc ttgtcgagtt ctcacgaggc 5701 catcccccga ttttgatttt atattccttg tgccacccac agttgaatca agaaccaaac 5761 cattcactgt cccaatctta actgttgagg aaatgtctaa ttcaagattc cccattcctt 5821 tggaaaagtt atatacgggt cctagcagtg cttttgttgt ccaaccacaa aatggcagat 5881 gtacgactga tggcgtgctc ttaggcacta cccagctgtc agctgtcaat atctgtaact 5941 tcagggggga tgtcacccac attgtgggca gccatgatta tacaatgaat ctggtatccc 6001 aaaattggag caattatgac ccaacagaag aaatcccagc ccccctggga acaccagatt 6061 tcgtgggaaa gatccaaggc ctgctcaccc agaccacaag agcggatggc tcgacccgtg 6121 cccacaaggc tacagtgagc actgggagcg tccacttcac tccaaagctg ggtagtgttc 6181 aattcaccac tgacacaaac aatgatttcc aaactggcca aaacacgaaa ttcacaccag 6241 ttggcgtcat ccaagacggt gatcaccacc agaatgaacc ccaacaatgg gtgctcccaa 6301 attactcagg tagaactggt cataatgtgc acctggcccc tgccgttgcc cccacttttc 6361 cgggtgagca actccttttc ttcaggtcca ctatgcccgg atgtagcggg taccccaaca 6421 tgaacttgga ttgtctactc ccccaggaat gggtgctgca cttctaccag gaagcagctc 6481 cagcacaatc cgatgtggct ctgctgagat ttgtgaatcc agacacaggt agggtcctgt 6541 ttgagtgcaa gctccataag tcaggctata tcacagtggc tcacaccggc ccgtatgatt 6601 tggttatccc ccccaatggt tattttagat ttgattcctg ggtcaaccag ttctacacac 6661 ttgcccccat gggaaatgga acggggcgca ggcgtgcatt ataatggctg gatctttctt 6721 tgctggattg gcatctgacg tcctcggctc tggactcggt tctctaatca atgctggagc 6781 tggagccatc aatcaaaaag ttgaatttga aaacaacaga aaattacagc aagcttcctt 6841 ccaattcagt agtaacctac aacaggcttc cttccaacat gataaagaga tgctccaagc 6901 acagattgag gctactcaaa aattgcaaca agatctgatg aaggttaaac aggcagtgct 6961 cctagagggt ggattttcca caacagatgc agcccgtggg gcaatcaacg cccccatgac 7021 aaaggctctg gactggagcg gaacaaggta ctgggcccct gatgccagga ccacaacata 7081 caatgcaggc cgcttttcca cccctcagcc ttcgggagca ttgccaggaa gaactaatcc 7141 cagggttccc gttctctctc ggggcccccc cagtacactt tctaatgctt ctactgccac 7201 ttctgtgtat tcaaatcaaa ctgtttccac gagactaggt tcttcagctg gttctggtac 7261 tagtgtctcg agtctcccgt caactgcaag aactaggaac tgggttgagg accaaaacag 7321 gaatttgtca cctttcatga gaggggctct caacacgtca ttcgtcaccc ctccatctag 7381 tagatcctct aaccaaggca cagtctcaac cgtgcctaaa gaaattttgg actcctggac 7441 tggcgctttc aacacgcgca ggcagcctct cttcgctcac attcgcaagc gaggggagtc 7501 acgggtgtaa tgtgaaaaga caaaattgat tatctttctt ttctttagtg tcttttaaaa 7561 aaaaaaaaaa aaaaaaaaaa //