Typing tool
|
Complete norovirus genomes
FJ537135 | GII.4 | ||
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GII.PNA3 |
ORF1: 5..5104 ORF2: 5085..6704 ORF3: 6704..7510LOCUS FJ537135 7576 bp RNA linear VRL 02-NOV-2009 DEFINITION Norovirus Hu/GII.4/CHDC2094/1974/US, complete genome. ACCESSION FJ537135 VERSION FJ537135.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/CHDC2094/1974/US ORGANISM Norovirus Hu/GII.4/CHDC2094/1974/US Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7576) AUTHORS Bok,K., Abente,E.J., Realpe-Quintero,M., Mitra,T., Sosnovtsev,S.V., Kapikian,A.Z. and Green,K.Y. TITLE Evolutionary dynamics of GII.4 noroviruses over a 34-year period JOURNAL J. Virol. 83 (22), 11890-11901 (2009) PUBMED 19759138 REFERENCE 2 (bases 1 to 7576) AUTHORS Bok,K., Abente,E.J., Realpe-Quintero,M., Mitra,T., Sosnovtsev,S.V., Kapikian,A.Z. and Green,K.Y. TITLE Direct Submission JOURNAL Submitted (10-DEC-2008) Laboratory of Infectious Diseases, Epidemiology Section, Norovirus Gastroenteritis Unit, National Institute of Allergy and Infectious Diseases, National Institutes of Health, 50 South Drive, BLD 50, Room 6316, Bethesda, MD 20892, USA FEATURES Location/Qualifiers source 1..7576 /organism="Norovirus Hu/GII.4/CHDC2094/1974/US" /mol_type="genomic RNA" /strain="Hu/GII.4/CHDC2094/1974/US" /host="Homo sapiens" /db_xref="taxon:660656" /country="USA" /collection_date="1974" /note="genotype: GII.4" CDS 5..5104 /note="ORF-1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="ACT76141.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEGEPVVSYSVKDGVSGLPELSTVRQPD ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LAKVELAPLSLFWRPVYAPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEASELAMVRSIEDAVLDLEAIENNHLTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLAREL AKKIATTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDVEK AKRDFPGQPDMWKNAFSPDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTIGSLIARA SGLLHERLDEYELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGGQLKGVRTM PELKQALKNISIKRCQIVYGGSTYTLESDGKGGVKVDRVQSTTVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQLENTEEAASKDGC PKPKDDEEFVVSSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGTQEFFGVSIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVGIGVHTAAAHGENTVICATQGSEGEATLEGGDNKGAYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPPYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKQPKPSVLEAAKRTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHIRKNECW NGDSFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD STQQRPILAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISINEGLPFGVPCT SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIQLDPEKLTAKLK EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVITELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5085..6704 /note="structural protein; ORF-2" /codon_start=1 /product="VP1" /protein_id="ACT76142.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLSPDLNPYLSHLSRMYNGYAGG FEVQVILAGNAFTAGKIIFAAIPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQAHDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT QLSAVNICNFRGDVTRVGISHDYTMNLVSQNWNNYDPTEEIPAPLGTPDFVGKIQGLL TQTTRADGSTRAHKATVSTGSVHFTPKLGSVQFTTDTNNDFQTGQNTKFTPVGVIQDG DHHQNEPQQWVLPNYSGTSGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC LLPQEWVSHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGPYDLVI PPNGYFRFDSWVNQFYTLAPMGNGSGRKRVL" CDS 6704..7510 /note="structural protein; ORF-3" /codon_start=1 /product="VP2" /protein_id="ACT76143.1" /translation="MAGSFFAGLASDVLGSGLGSLINAGAGAINQRVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIDATQKLQQGLMQIKQAVLLEGGFSAADAARGAIN APMTKTLDWSGTRYWAPEARVTTYNAGHFSPSQPSRTPSGRISSVTSASVRNSPSLSS KSSTATTVYSNQTVSTRLGSSAGSGTSVSSLPSASRTRSWVEDQNRSVSPFMRGALNT SFVTPPSSRSSNQSTVSTVPKEILDSWTGAFNTRRQPLFAYIHKRGESRV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga 61 caccgcaaaa tcttcaagtg acggagtact ttctagtatg gctgtcactt ttaaacgagc 121 cctcggggcg cggcctaagc agccgccccc gagggagata ccacaaagac ccccacgacc 181 gcccactccg gagttggtca agaaaatccc tccccccccg cccaacgggg agggtgagcc 241 agtggtctct tacagtgtca aagatggcgt ttccgggttg cctgagctct ccactgtcag 301 gcaaccagat gagaccaaca cggcatttag tgttccccca ctcaaccaga gagagaacag 361 ggatgccaag gagccactga ctggaacaat cctggagatg tgggacgggg aaatctacca 421 ttatggcttg tacgttgaac gaggcctggt gcttggcgtg cacaaaccac cagcagccat 481 tagccttgcc aaggttgaat tggcaccact ttctttgttc tggagacctg tgtacgcccc 541 ccagtatctc atctccccag acactctcag gagactgcat ggggaatcat tcccctacac 601 agcctttgac aacaactgct atgccttctg ttgctgggtt ttagacctga acgattcgtg 661 gctgagtagg aggatgatac agaggacaac tggcttcttc aggccttacc aagactggaa 721 taggaaaccc cttcccacca tggatgactc caaactgaag aaggtggcca acatattcct 781 gtgtgctttg tcttcactat tcaccaggcc catcaaggac ataataggga agctaaggcc 841 tcttaacatc ctcaacattt tggcttcatg tgattggacc tttgcaggca tagtggaatc 901 cctaattctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gatcgccccc ttactgggtg actatgagct acaggggcct gaggacctcg cggtagagct 1021 agtgccagta gtgatggggg ggataggttt ggtgttggga ttcaccaaag aaaagattgg 1081 gaagatgttg tcatctgctg catccacatt gagggcttgt aaagaccttg gtgcatatgg 1141 actggagatc ctaaaactag tcatgaaatg gttcttccca aagaaagagg aagcaagcga 1201 gttagccatg gtgagatcta tcgaggacgc ggtgttggac ctcgaagcaa ttgagaacaa 1261 tcacttgacc accctgctta aggacaagga cagcctggcg acttacatga gaactcttga 1321 ccttgaggaa gagaaagcca ggaagctctc aaccaagtcc gcctcacctg atatcgtggg 1381 tacaatcaac gctctcctgg caaggattgc ggctgcccgc tccctagtac atcgggcaaa 1441 ggaagaactt tccagcagac cgagacccgt tgttgtgatg atatcaggaa agccagggat 1501 aggaaagact cacctagcca gagagctggc caagaagatc gcaaccaccc tcacagggga 1561 ccagagggtg ggcctcatcc cacgcaatgg cgttgaccac tgggatgcat acaagggaga 1621 gagggtcgtc ctttgggacg actacgggat gagcaacccc atccatgacg ctctcagatt 1681 gcaggagctt gctgacactt gccccctgac actaaattgt gataggattg aaaacaaagg 1741 taaagttttt gacagtgatg ccataattat caccaccaac ttggccaacc cagcaccact 1801 ggactatgtc aattttgagg cctgctcgag gcgcattgat ttcctcgtgt acgccgacgc 1861 ccctgatgtc gaaaaggcga agcgcgactt cccaggccaa cctgacatgt ggaaaaatgc 1921 tttcagccct gatttctctc acataaagct gatgctggcc ccacagggtg gttttgacaa 1981 gaacggcaac accccacatg ggaagggcgt catgaagacc ctcaccattg gttccctcat 2041 cgcccgtgct tcagggctcc tccacgagag gctggatgag tacgagctgc aaggcccagc 2101 cctcacaacc ttcaactttg accgaaacaa agtgctcgct ttcagacagc ttgctgctga 2161 aaataagtac ggactgatgg acacaatgag ggttggaggg caactcaagg gcgttagaac 2221 catgccagag ctcaagcaag cactcaagaa catttcaatt aagaggtgcc agatagtgta 2281 tggtggcagc acttatacac ttgaatctga tggcaagggt ggtgtgaagg tcgacagagt 2341 tcagagtacc accgtacaga ccaataatga gttagccggc gccctgcacc acctcaggtg 2401 cgccaggatc aggtactatg tcaagtgtgt ccaggaggcc ctgtactcca tcatccaaat 2461 tgcaggggcc gcatttgtca ccacgcgcat tgtcaagcgc atgaacatac aggacctttg 2521 gtccaagcca caactggaga acacagaaga agctgctagc aaagatgggt gcccaaaacc 2581 caaagatgat gaggagtttg ttgtttcatc tgatgacatc aagaccgagg gtaagaaagg 2641 aaagaacaag actggtcgcg gcaagaagca cacagccttc tcgagtaagg gtctcagtga 2701 cgaggagtac gatgagtaca aaagaatcag ggaggaaaga aacggcaagt actctataga 2761 ggagtatctc caagacagag acaagtatta tgaggaggtt gccattgcca gggcgactga 2821 ggaggacttc tgcgaagaag aagaggccaa gatccgtcaa agaatcttta gaccaacaag 2881 gaagcaacgc aaggaggaga gggcttctct cggtttagtc acaggctctg agatcagaaa 2941 aagaaaccca gatgacttca aacccaaggg aaaactgtgg gccgatgacg acagaagtgt 3001 cgattacaat gagaaactca gttttgaagc cccaccaagc atctggtcaa ggatagtcaa 3061 ctttggttcg ggttggggtt tctgggtttc tcctagtctg ttcataacat caactcatgt 3121 tataccccag ggcacacagg agttctttgg ggtgtccatc aaacaaatcc aggtacacaa 3181 atcaggcgaa ttttgccgct tgaggttccc aaagccaata aggactgatg tgacgggcat 3241 gatcttagag gaaggtgccc ccgaagggac cgtggccaca ctactcatca agaggccaac 3301 tggtgagctc atgcccttag cggccaggat gggcactcac gcaaccatga agatccaagg 3361 tcgcactgtt gggggccaaa tgggtatgct cctgacaggg tccaatgcca aaagtatgga 3421 cttgggcacc acacccggcg actgtggttg tccctacatc tacaagagag ggaacgacta 3481 cgtgggcatc ggagttcaca cagccgctgc ccatggagaa aacactgtca tatgtgccac 3541 ccagggaagt gaaggtgagg ccacacttga aggcggggat aataaaggtg cttactgtgg 3601 tgccccgatc ttaggtccag gaagtgcccc aaaactcagc accaaaacca agttctggag 3661 gtcatccaca gcaccactcc ctcctggtac ctatgagcca ccctacctcg gtggtaagga 3721 tcccagggtt aagggtggtc catcactaca acaagtcatg agggaccagt tgaaaccatt 3781 cactgaacca agaggtaaac aaccaaaacc aagtgtgttg gaagctgcca agagaaccat 3841 cattaatgtt cttgaacaaa caatagaccc acctcagaaa tggtcatttg cgcaagcttg 3901 cgcttctctt gacaaaacca cctccagtgg ccatccacac catatacgga agaatgaatg 3961 ctggaatgga gattccttta caggtaaatt ggcagaccag gcctcaaagg ccaacttgat 4021 gtttgaggag ggaaagaaca tgactccagt ttacacaggt gccctcaagg atgagttagt 4081 caaaactgac aagatatatg gcaagatcaa gaagaggcta ctttggggat cggacctggc 4141 aaccatgatc cggtgtgccc gggctttcgg aggcctaatg gatgaactca aggctcactg 4201 tgtcacactc cctgtcagag ttggtatgaa catgaatgaa gacggcccca tcatctttga 4261 aaaacattct aggtacaggt accactatga tgcagattac tctcgatggg actcaacaca 4321 acagagaccc atattggctg cagccctaga gatcatggtc aaattctccc cagagccaca 4381 cttagctcaa atagttgcag aagaccttct atcccccagt gtgatggatg taggtgattt 4441 taagatatca atcaacgagg gccttccctt tggggtgcct tgcacctcac aatggaactc 4501 catcgcccac tggctcctca ccctctgtgc actctctgaa gttacggacc tctcccctga 4561 catcatccag gctaattctc tcttctcttt ctatggtgat gatgaaattg tgagtacaga 4621 catacaattg gacccagaaa aactgacagc aaagctaaag gaatacgggc tgaagccaac 4681 tcgccctgat aagactgagg gacctctgat tatttctgag gacctaaatg gtttaacctt 4741 ccttcggagg accgtgaccc gcgacccagc tggttggttt ggtaaattgg aacagagttc 4801 gatactcagg cagatgtact ggaccagggg ccccaaccat gaggaccctt ctgaaacaat 4861 gataccacat tcccaaaggc ccatacaact gatgtccctg ctgggtgagg ctgcactgca 4921 tggcccagcg ttctacagca aaatcagcaa gctagtcatc acagagctaa aggaaggtgg 4981 catggatttt tacgtgccca gacaagagcc gatgttcagg tggatgaggt tctcagacct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 gtgacgccaa cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggcttt ggagcctgtt gtcggtgctg ccattgcagc acctgtggca ggccaacaaa 5221 atataattga cccctggatt agaaataatt ttgtgcaagc ccctggtgga gagttcacag 5281 tgtcccctag aaatgctcca ggtgagatac tatggagcgc gcccttgagc cctgatttga 5341 acccctatct ttctcacctg tccagaatgt acaatggtta tgcaggtggc tttgaagtgc 5401 aggtaatcct cgcagggaat gcgttcactg ccgggaaaat catatttgca gcaattccac 5461 caaattttcc aactgaaggc ttaagcccta gccaggttac aatgttcccc cacataattg 5521 tagatgtcag gcaattggaa cctgtattaa tccccctacc tgatgttagg aataatttct 5581 atcattataa tcaagcacat gattctactc tcaaattgat agcaatgttg tatacaccac 5641 tcagagccaa taatgccggg gatgatgtct tcacagtctc ttgtcgagtc ctcacgagac 5701 catcccccga ttttgatttc atattcctgg tgccacccac agtcgagtca agaactaagc 5761 cattcactgt ccctatctta actgttgagg aaatgtccaa ttcaagattc cccattccct 5821 tagaaaagtt gtatacgggt cctagcagtg cttttgttgt tcaaccacaa aatggcagat 5881 gcacgactga tggcgtgctt ctaggcacta ctcagttgtc agctgtcaat atctgtaatt 5941 tcagggggga tgtcacccgt gttgggatca gccatgatta cacaatgaat ttggtgtccc 6001 aaaattggaa taactatgat ccaacagagg aaatccctgc tcccctggga acaccagact 6061 ttgtgggtaa gatccaaggt ctgctcactc aaaccacaag agcagacggc tcgactcgtg 6121 cccacaaagc cacagtgagc actgggagcg ttcacttcac cccaaagctg ggtagtgtcc 6181 aattcaccac cgacacaaac aatgactttc aaactggcca aaatacaaaa ttcaccccag 6241 ttggtgtcat ccaagatggt gatcaccacc agaatgaacc ccaacaatgg gtgctcccaa 6301 attactcagg cacctctggt cacaatgtgc atctggcccc tgccgttgct cccactttcc 6361 ccggtgagca gcttcttttc tttaggtcca ccatgcccgg gtgcagcggg taccctaaca 6421 tgaatttgga ttgcctgctc ccacaggagt gggtgtcgca cttctatcag gaagcagccc 6481 cagcacaatc agatgtggcc ctgctgagat ttgtgaatcc agatacaggt agggttttgt 6541 ttgagtgcaa actccataaa tcaggctaca tcacagtggc tcacactggt ccgtatgatt 6601 tggttattcc ccccaatggt tatttcagat ttgattcttg ggtcaaccag ttttacacac 6661 ttgcccccat gggaaatgga tcggggcgca agcgtgtgtt ataatggctg gatctttctt 6721 tgctggattg gcatctgatg ttcttggttc tggacttggt tctctaatca atgccggagc 6781 cggagcgatc aatcaaagag tggaatttga aaataatagg aaattacagc aagcttcctt 6841 ccaatttagc agcaatttac aacaagcttc ctttcaacat gacaaagaaa tgcttcaggc 6901 tcaaattgat gctactcaaa aattgcagca gggcttaatg cagatcaagc aggcggtgct 6961 tctggaaggt gggttttctg cggcagacgc cgctcgtggg gcaatcaacg cgcccatgac 7021 aaaaaccctg gactggagtg gaactaggta ctgggctccc gaggccagag tcacaacata 7081 caatgcaggc catttctccc cttcccagcc ttctaggacg ccgtctggga ggattagttc 7141 tgtgacttct gcatctgtgc gaaattcccc cagcttatct tctaaatctt ctactgctac 7201 aactgtgtat tctaatcaaa ctgtttcaac gagacttggt tcttcagctg gttctggaac 7261 cagtgtctcg agcctcccgt cggcttccag aaccaggagc tgggttgagg accaaaacag 7321 gagcgtgtca cccttcatga ggggagcact caacacatca tttgttactc ctccatctag 7381 cagatcctct aaccagagca cagtctcaac cgtacccaaa gaaattttgg actcctggac 7441 tggcgctttc aacacgcgca ggcagccgct cttcgcatac atccataagc gaggggagtc 7501 acgggtttga agtgaaaaga caatctgatc tttctttatt ttaatgtctt ttaaaaaaaa 7561 aaaaaaaaaa aaaaaa //