Typing tool
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Typing tool
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Complete norovirus genomes
| FJ515294 | GI.2 | |
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| GI.P2 |
ORF1: 5..5371
ORF2: 5355..6995
ORF3: 6995..7630
LOCUS FJ515294 7699 bp RNA linear VRL 01-JAN-2010
DEFINITION Norovirus Hu/GI.2/Leuven/2003/BEL, complete genome.
ACCESSION FJ515294
VERSION FJ515294.1
KEYWORDS .
SOURCE Norovirus Hu/GI.2/Leuven/2003/BEL
ORGANISM Norovirus Hu/GI.2/Leuven/2003/BEL
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7699)
AUTHORS Wollants,E., Verbeeck,J. and Van Ranst,M.
TITLE Long-term asymptomatic excretion of a genogroup I norovirus
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7699)
AUTHORS Wollants,E., Verbeeck,J. and Van Ranst,M.
TITLE Direct Submission
JOURNAL Submitted (01-DEC-2008) Laboratory of Clinical Virology, Rega
Institute for Medical Research, KU Leuven, Minderbroedersstraat 10,
Leuven 3000, Belgium
FEATURES Location/Qualifiers
source 1..7699
/organism="Norovirus Hu/GI.2/Leuven/2003/BEL"
/mol_type="genomic RNA"
/strain="Hu/GI.2/Leuven/2003/BEL"
/isolation_source="patient"
/host="Homo sapiens"
/db_xref="taxon:658397"
/country="Belgium"
/collection_date="2003"
/note="subtype: 2; genotype: genogroup I"
CDS 5..5371
/codon_start=1
/product="non-structural polyprotein"
/protein_id="ACU56257.1"
/translation="MMMASKDVVATNVASNNNANNTSATSRFLSRFKGLGGGASPPSP
IKIKSTEMALGLIGRTTPEPTGTAGPPPKQQRDRPPRTQEEVQYGMGWSDRPIDQNVK
SWEELDTTVKEEILDNHKEWFDAGGLGPCTMPPTYERVRDDSPPGEQVKWSARDGVNI
GVERLTTVSGPEWNLCPLPPIDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTV
GVHSPQAAFSVARVTIQPIAAWWRVCYIPQPKHRLSYDQLKELENEPWPYAAITNNCF
EFCCQVMNLEDTWLQRRLITSGRFHHPTQSWSQQTPEFQQDSKLELVRDAILAAVNGL
VSQPFKNFLGKLKPLNVLNILSNCDWTFMGVVEMVILLLELFGVFWNPPDVSNFIASL
LPDFHLQGPEDLARDLVPVILGGIGLAIGFTRDKVTKVMKSAVDGLRAATQLGQYGLE
IFSLLKKYFFGGDQTERTLKGIEAAVIDMEVLSSTSVTQLVRDKQAAKAYMNILDNEE
EKARKLSAKNADPHVISSTNALISRISMARSALAKAQAEMTSRMRPVVIMMCGPPGIG
KTKAAEHLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQDDCNK
LQAIADSAPLTLNCDRIENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVY
CSAPEVEQIRRVSPGDTSALKDCFKPDFSHLKMELAPQGGFDNQGNTPFGKGTMKPTT
INRLLIQAVALTMERQDEFQLQGKMYDFDDDRVSAFTTMARDNGLGILSMAGLGKKLR
GVTTMEGLKNALKGYKINACTIKWQAKVYSLESDGNSVNIKEERNVLTQQQQSVCAAS
VALTRLRAARAVAYASCIQSAITSILQIAGSALVVNRAVKRMFGTRTATLSLEGPPRE
HKCRVHMAKAAGKGPIGHDDVVEKYGLCETEEDEEVAHAEIPSATMEGKNKGKNKKGR
GRRNNYNAFSRRGLNDEEYEEYKKIREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDG
GIGETEMEIRHRVFYKSKSRKHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDER
EVDYNEKISFEAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFGEPLTSI
AIHRAGEFTLFRFSKKIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIA
SMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKS
GNTVVCAVQASEGETTLEGGDKGHYAGHEIIKHGCGPALSTKTKFWKSSPEPLPPGVY
EPAYLGGRDPRVSGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMD
TPVPWSYSDACQSLDKTTSSGFPYHRRKNDDWNGTTFVRELGEQAAHANNMYEQAKSM
KPMYTAALKDELVKPEKVYQKVKKRLLWGADLGTVVRAARAFGPFCDAIKSHTIKLPI
KVGMNSIEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELAS
VVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDV
IQSMSYFSFYGDDEIVSTDIEFDPAKLTQVLREYGLKPTRPDKSEGPIIVRKNVDGLV
FLRRTISRDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKVQLISLLGEA
SLHGEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVN
DDGV"
CDS 5355..6995
/codon_start=1
/product="capsid protein"
/protein_id="ACU56258.1"
/translation="MMMASKDAPQSADGASGAGQLVPEVNTADPLPMEPVAGPTTAVA
TAGQVNMIDPWIVNNFVQSPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLSQMYNG
WVGNMRVRILLAGNAFSAGKIIVCCVPPGFTSSSLTIAQATLFPHVIADVRTLEPIEM
PLEDVRNVLYHTNDNQPTMRLVCMLYTPLRTGGGSGNSDSFVVAGRVLTAPSSDFSFL
FLVPPTIEQKTRAFTVPNIPLQTLSNSRFPSLIQGMILSPDASQVVQFQNGRCLIDGQ
LLGTTPATSGQLFRVRGKINQGARTLNLTEVDGKPFMAFDSPAPVGFPDFGKCDWHMR
ISKTPNNTSSGDPMRSVDVQTDVQGFVPHLGSIQFDEVFNHPTGDYIGTIEWISQPST
PPGTDINLWEIPDYGSSLSQAANLAPPVFPPGFGEALVYFVSAFPGPNNRSAPNDVPC
LLPQEYVTHFVSEQAPTMGDAALLHYVDPDTNRNLGEFKLYPGGYLTCVPNGVGAGPQ
QLPLNGVFLFVSWVSRFYQLKPVGTASTARGRLGVRRI"
CDS 6995..7630
/codon_start=1
/product="ORF3"
/protein_id="ACU56259.1"
/translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQSQRYQQDLALQRN
TFEHDKDMLSYQVQASNALLAKNLNTRYSMLIAGGLSNADASRAVAGAPVTQLIDWNG
TRVAAPRSDATTLRSGGFMAVPMPVQPKSKAPQSSGFSNPAYDMSTVSSRTSSWVQSQ
NSLRNVSPFHRQALQTVWVTPPGSTSSSSVSSTPYGVFNTDRMPLFANLRR"
ORIGIN
1 gtgaatgatg atggcgtcga aagacgtcgt tgcaactaat gttgcaagca acaacaatgc
61 taacaacact agtgctacat ctcgattttt atcgagattt aagggcttag gaggtggcgc
121 aagcccccct agtcctataa aaattaaaag tacagaaatg gctctgggat taattggcag
181 aacaactcca gaaccaacag ggaccgctgg tccaccgccc aaacaacaga gggaccgacc
241 tcccagaact caggaggagg tccagtatgg tatgggatgg tctgacaggc ccattgatca
301 aaacgttaaa tcatgggaag agcttgatac cacagtcaag gaagagatct tagacaacca
361 caaagagtgg tttgacgctg gtggtttggg tccttgcaca atgcctccaa catatgaacg
421 ggtcagggat gacagtccac ctggtgaaca ggttaaatgg tccgcgcgtg atggagtcaa
481 cattggagtg gagcgcctca caacagtgag tggacccgag tggaaccttt gccctctacc
541 ccccattgac ttaaggaaca tggagccagc cagtgaaccc actattggag atatgataga
601 attctatgaa ggccacatct atcattactc catatacatt gggcaaggca aaacagtcgg
661 tgtccattct ccacaggcag cgttctcagt ggctagggtg accatccagc ccatagccgc
721 ttggtggaga gtttgttaca taccccaacc caagcacaga ctgagttacg accaactcaa
781 ggaattagag aatgagccat ggccatatgc ggccataact aataattgtt ttgaattctg
841 ctgtcaagtc atgaaccttg aggacacgtg gttacagagg cggttgatca cgtcgggtag
901 attccaccac cccacccaat cgtggtcaca gcagacccct gagttccagc aagatagcaa
961 gttagagttg gtcagggatg ctatattagc tgcagtgaat ggtcttgttt cgcagccctt
1021 caagaatttc ttgggtaaac tcaaacctct caatgtgctc aacattttgt ctaattgtga
1081 ttggaccttc atgggagtgg tggagatggt tatactatta cttgaactct ttggcgtgtt
1141 ctggaacccg cctgatgtgt ccaattttat agcgtccctt ctccctgatt tccatcttca
1201 aggacctgaa gacttggcac gagatctagt cccagtgatt cttggcggca taggattggc
1261 catcgggttc accagagaca aagttacaaa ggttatgaag agtgctgtgg atggtcttcg
1321 agctgctaca caactgggac aatatgggtt agaaatattc tcactactca agaagtattt
1381 ctttgggggg gaccagactg agcgcaccct caaaggcatt gaggcggcag tcatagatat
1441 ggaagtgttg tcctccacat cagtgacaca gctagtgaga gacaaacagg cagcaaaagc
1501 ttatatgaac atcttggaca atgaagaaga gaaagccagg aagctctcag ctaaaaacgc
1561 tgacccacat gtgatatcct caacaaatgc cctaatatcg cgtatttcca tggcacgatc
1621 tgcattggcc aaggcccagg ctgagatgac cagtcgaatg agaccagttg ttattatgat
1681 gtgtggcccg cctgggattg ggaagaccaa ggctgctgag cacctagcta agcgtctagc
1741 taatgagatc agacctggtg gtaaggtggg gttggttccc cgtgaagctg tcgaccactg
1801 ggacggttat catggtgagg aagtgatgct gtgggacgac tatggcatga caaaaataca
1861 agatgactgt aataaactcc aagccattgc tgattcggcc ccactcacct taaattgtga
1921 caggattgaa aacaaaggaa tgcagttcgt ttcagatgca atagtcatca ctaccaacgc
1981 cccaggcccc gcccctgtgg actttgtcaa ccttggacca gtgtgtagac gggtcgactt
2041 cttggtctac tgctctgccc cagaggtgga acagatacgg agggtcagcc ctggtgatac
2101 atcagcactg aaagactgtt ttaagccaga cttctctcat ttaaaaatgg agctggctcc
2161 acaaggtggg tttgacaatc aagggaacac accgtttggc aaaggcacca tgaagccaac
2221 aaccattaac agacttctca tacaagctgt ggcccttacc atggaaaggc aggatgagtt
2281 tcagttacag gggaagatgt atgactttga tgatgacagg gtgtcagcat tcaccaccat
2341 ggcacgtgat aatggcctgg gcatcttgag catggcaggt ctgggcaaga agctacgtgg
2401 tgttacaacg atggagggct taaagaatgc cctaaagggg tacaaaatca atgcgtgcac
2461 aataaaatgg caggccaaag tgtactcact agaatcagat ggcaacagtg tcaacattaa
2521 agaggagagg aacgtcttaa ctcagcaaca acagtcggtg tgtgccgcct ctgtcgcgct
2581 cactcgtctt cgggctgcgc gcgcggtggc atacgcatcg tgcatccaat cggctataac
2641 ttctatacta caaattgctg gctcagccct agtggtcaac agagcagtga agagaatgtt
2701 tggcacgcgc acagccacct tgtccctaga gggccccccc agagaacaca aatgcagggt
2761 ccacatggcc aaggccgcag gaaagggacc tattggccat gatgatgtgg tagaaaagta
2821 tgggctttgc gaaacagagg aggacgaaga agtggcccac gctgaaatcc cttctgctac
2881 catggagggc aagaacaaag ggaagaacaa gaaaggacgt ggtcggagga acaattacaa
2941 cgccttctcc cgcagaggac tcaatgatga agagtacgaa gagtacaaga agatacgcga
3001 ggagaaaggt ggcaactaca gcatacagga gtacctagaa gacagacaaa ggtatgaaga
3061 agagctggca gaggttcaag caggtggaga tggaggaatt ggggaaactg aaatggaaat
3121 ccgccacaga gtgttctaca aatccaagag cagaaagcat catcaggaag aacgacgcca
3181 gctagggctg gtgacaggtt ccgacattcg gaagagaaaa ccaatcgact ggaccccacc
3241 caagtcagca tgggcagatg atgagcgtga ggtggattac aatgagaaga tcagcttcga
3301 ggcgcccccc actttatgga gtagagtgac aaagtttggg tctggatggg gtttctgggt
3361 cagccctaca gtcttcataa ccacaacgca cgttatacca accagtgcaa aggagttctt
3421 tggtgaaccc ctaaccagca tagctatcca cagggctggt gagttcactc tcttcaggtt
3481 ttcaaagaaa attaggcctg atctcacagg tatgatcctt gaggagggtt gccccgaggg
3541 cacggtgtgt tcagtactaa taaaaaggga ctctggtgaa ctactgccat tggccgtgag
3601 gatgggcgca atagcatcaa tgcgcataca gggccgcctt gtccatgggc aatctggcat
3661 gttactcacc ggggcaaatg ctaagggcat ggaccttgga accatcccag gggattgtgg
3721 ggctccttat gtttataaga gggctaatga ctgggtggtc tgtggtgtac atgccgctgc
3781 caccaagtca ggcaacaccg ttgtgtgcgc cgttcaggcc agtgaaggag aaactacgct
3841 tgaaggcggt gacaaaggtc attatgctgg acatgaaata attaagcatg gttgtggacc
3901 agctctatca accaaaacca aattctggaa atcatccccc gaaccactgc cccctggggt
3961 ctacgagccc gcctacctcg ggggccggga ccctagggtg tctggcggtc cctcactcca
4021 acaagtgttg cgggatcagt taaagccatt tgctgagcca cgaggacgta tgccagaacc
4081 aggtctcttg gaggccgcag ttgagactgt gacttcatca ttagagcagg ttatggacac
4141 tcccgttcct tggagctata gtgatgcgtg ccagtccctt gacaagacca ctagttctgg
4201 tttcccctac catagaagga agaatgacga ctggaatggc accacctttg ttagggagtt
4261 aggggagcag gcggcacacg ctaataacat gtatgagcag gctaaaagta tgaaacccat
4321 gtacacggca gcacttaaag atgaactagt caaaccagag aaagtatacc agaaagtgaa
4381 aaagcgcttg ttatggggag cagacttggg cacggtagtt cgggccgcac gggcttttgg
4441 cccattctgt gatgctataa aatcccacac aatcaaattg cctatcaaag ttggaatgaa
4501 ttcaattgag gatggaccac tgatctatgc agaacattcg aaatataagt accattttga
4561 tgcagattac acagcttggg attcaactca aaataggcaa atcatgacag agtcattttc
4621 aatcatgtgt cggctaactg catcacctga attagcttca gtggtggctc aagacttgct
4681 cgcaccttca gagatggatg ttggtgacta cgtcataaga gtgaaggaag gtctcccatc
4741 tggtttccca tgcacatcac aagttaatag cataaaccat tggttaataa ctctgtgtgc
4801 cctttctgaa gtaactggtc tgtcgccaga tgttatccag tctatgtcat atttctcttt
4861 ctatggtgat gatgaaatag tgtcaactga catagaattt gatccagcaa aactaacaca
4921 agttctcaga gagtatggac ttaaacccac ccgccccgac aaaagcgagg gcccaataat
4981 tgtaaggaag aatgtggatg gtttggtctt tttacgtcgc actatctccc gtgacgctgc
5041 gggattccaa ggacgactgg accgagcatc cattgagaga caaatctact ggactagagg
5101 acccaaccat tcagaccctt ttgagaccct ggtgccacac caacaaagga aggtccaact
5161 aatatcatta ttgggcgagg cctcactgca tggtgaaaag ttttacagga agatttcaag
5221 caaagttatc caggaaatta aaacaggggg tcttgaaatg tatgtgccag gatggcaagc
5281 catgttccgt tggatgcggt tccatgacct tggtttgtgg acaggagatc gcaatctcct
5341 gcccgaattt gtaaatgatg atggcgtcta aggacgcccc tcaaagcgct gatggcgcaa
5401 gcggcgcagg tcaactggtg ccggaggtta atacagctga ccccttaccc atggaacccg
5461 tggctgggcc aacaacagcc gtagccactg ctgggcaagt taatatgatt gatccctgga
5521 ttgttaataa ttttgtccag tcaccgcaag gtgagtttac aatttcccct aataataccc
5581 ccggtgatat tttgtttgat ctacaattag gtccacattt aaaccctttc ttgtcacatt
5641 tgtcccaaat gtataatggc tgggttggaa acatgagagt taggattctc cttgctggga
5701 atgcattctc agccggaaag attatagtct gttgtgtccc ccctggcttc acatcttcct
5761 ctctcaccat agctcaggct acattgtttc cccatgtgat tgctgatgtg agaacccttg
5821 aaccaataga aatgcccctc gaggacgtgc gcaatgtcct ctatcacacc aatgataatc
5881 aaccaacaat gcggctggtg tgtatgctgt acacgccgct ccgcactggt ggggggtctg
5941 gtaattctga ttcttttgta gttgctggca gggtgctcac ggcccctagt agcgacttca
6001 gtttcttgtt ccttgtcccg cctaccatag aacagaagac tcgggctttt actgtgccca
6061 atatcccctt gcaaacctta tccaattcta ggtttccttc cctcatccag gggatgattc
6121 tgtcccctga cgcatctcaa gtggtccaat tccaaaatgg acgttgtctt atagatggtc
6181 aactcctagg cactacaccc gccacatcag gacagctgtt cagagtgaga ggaaagataa
6241 atcagggagc ccgcacactc aatctcacag aggtggatgg caagccattc atggcatttg
6301 attcccctgc acctgtgggg ttccccgatt ttggaaaatg tgattggcac atgagaatca
6361 gcaaaacccc aaataacaca agctcaggtg accctatgcg cagtgtcgac gtgcaaaccg
6421 atgtgcaggg ttttgtgcca cacctgggaa gcatacagtt tgatgaagtg ttcaaccatc
6481 ccacaggtga ctacattggc accattgaat ggatttccca gccatctaca ccccctggaa
6541 cagatattaa tttatgggag atccccgatt atggatcatc cctctcccaa gcagctaatc
6601 tggccccccc agtattcccc cctggatttg gtgaggctct tgtgtacttt gtttctgctt
6661 ttccaggccc caacaaccgc tcagccccga atgatgtgcc ttgtctcctc cctcaagagt
6721 acgtaaccca ctttgtcagt gaacaagccc caacgatggg tgacgcagct ttgctgcatt
6781 atgtcgaccc tgataccaac agaaaccttg gggagttcaa gttataccct ggaggttacc
6841 tcacctgtgt accaaacggg gtgggtgccg ggcctcaaca gcttcccctt aatggtgtct
6901 ttctctttgt ctcttgggtg tctcgttttt atcagctcaa gcctgtggga acagccagta
6961 cggcaagagg taggcttgga gtgcgccgta tataatggcc caagccatta taggagcaat
7021 tgccgcgtca gctgctggct cagcattggg tgcgggcatc caggctggtg ccgaagctgc
7081 gcttcagagt cagagatacc aacaagactt agccctgcaa aggaatacct ttgaacatga
7141 taaagatatg ctttcctacc aggttcaggc aagtaatgcg ctcttagcaa agaatctcaa
7201 tacccgctat tctatgctta ttgcaggagg tctttctaat gctgatgctt ctcgggctgt
7261 tgctggagcc ccagtaacac aattgattga ttggaacggc actcgtgttg ctgcccccag
7321 atcagatgca acaactctga ggtctggtgg ttttatggca gtccccatgc ctgttcaacc
7381 caaatctaag gccccgcaat cctctgggtt ctctaatcct gcttatgata tgtccacagt
7441 ttcctctagg acttcttcct gggtgcagtc acagaattcc ctgcgaaatg tgtcaccatt
7501 ccataggcag gccctgcaga ctgtatgggt cactccacct gggtctactt cttcttcttc
7561 tgtttcctca acaccttatg gtgtttttaa tacggatagg atgccgctat tcgcaaattt
7621 gcggcgctaa tgttgtaata taatgcagca gtgggcacta tattcaattt ggtttaatta
7681 gtaaataatt tggctattg
//