Typing tool
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Typing tool
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Complete norovirus genomes
| FJ514242 | GII.4 Den Haag | |
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| GII.P4 Den Haag |
ORF1: 5..5104
ORF2: 5085..6707
ORF3: 6707..7513
LOCUS FJ514242 7559 bp RNA linear VRL 18-APR-2011
DEFINITION Norovirus Hu/GII-4/CUK-3/2008/KR, complete genome.
ACCESSION FJ514242
VERSION FJ514242.1
KEYWORDS .
SOURCE Norovirus Hu/GII-4/CUK-3/2008/KR
ORGANISM Norovirus Hu/GII-4/CUK-3/2008/KR
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7559)
AUTHORS Park,J.W., Lee,S.G., Lee,Y.M., Jheong,W.H., Ryu,S. and Paik,S.Y.
TITLE Full Sequence Analysis and Characterization of the South Korean
Norovirus GII-4 Variant CUK-3
JOURNAL Virol. J. 8 (1), 167 (2011)
PUBMED 21489302
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7559)
AUTHORS Lee,S.-G., Park,S.-W. and Paik,S.-Y.
TITLE Direct Submission
JOURNAL Submitted (02-DEC-2008) Microbiology, College of Medicine, The
Catholic University of Korea, Banpo4-dong, Seocho-gu, Seoul
137-701, South Korea
FEATURES Location/Qualifiers
source 1..7559
/organism="Norovirus Hu/GII-4/CUK-3/2008/KR"
/mol_type="genomic RNA"
/strain="Hu/GII-4/CUK-3/2008/KR"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:587432"
/country="South Korea"
/collection_date="2008"
/note="genotype: GII-4"
CDS 5..5104
/note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and
3Dpol; ORF1"
/codon_start=1
/product="polyprotein"
/protein_id="ACL36374.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDKMFSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELIKKIPPPPPNGEDEVVVSYSAKDGVSGLPELSTVRQPE
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK
LRPLNIINILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDFELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVKTM
PELKQALKNISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSKPQVENTEEATNKDGC
PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGIPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGGEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKDGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLVIAELKEGGTDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6707
/note="VP1; ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="ACL36375.1"
/translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEVPAPLGTPDFVGKIQGVL
TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNVQNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6707..7513
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="ACL36376.1"
/translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRNNPRTPTPARGSPSTSS
NASTATSIYSNQTVSTRLGSTAGSGTNVSSPPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acaaaatgtt ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcctaaac agcccccccc gagggaaata ccacaaagac ccccacgacc
181 acctactcca gaactgatca aaaagatccc tcctcccccg cccaacggag aggatgaagt
241 agtggtttct tatagtgcca aagatggcgt ttccggttta cctgagcttt ccaccgtcag
301 gcaaccggaa gaaaccaata cggccttcag tgtccctcca ctcaatcaga gggagaatag
361 ggatgctaag gaaccactga ctggaacaat cctggaaatg tgggatggag aaatctacca
421 ttatggcctg tatgttgagc gaggtcttgt gctgggtgtg cacaaaccac cagctgccat
481 tagcctcgcc aaggtcgaac taacaccact ctccttgttc tggagacctg tgtacactcc
541 tcagtacctc atctctccag acactctcaa gaaattacac ggagaaacat tcccctacac
601 agccttcgac aacaattgct atgccttttg ttgctgggtc ctggatctaa acgactcgtg
661 gctgagtagg agaatgatcc agagaacaac tggcttcttc agaccctacc aagattggaa
721 taggaaaccc ctccccacta tggatgattc caaattgaag aaggtagcta acatatttct
781 gtgcaccctg tcttcgctat ttaccaggcc cataaaagac ataataggga agttaaggcc
841 tctcaacatc atcaacatcc tggcttcatg tgattggact ttcgcaggca tagtggagtc
901 cttgatactc ttggcagagc tctttggagt cttctggaca cccccagatg tgtctgcgat
961 gattgccccc ttactcggtg atttcgagtt acaaggacct gaggaccttg cagtggaact
1021 cgtccctgta gtaatggggg gaattggttt ggtgctagga ttcaccaaag agaagattgg
1081 aaaaatgttg tcatctgctg catctacctt gagagcttgt aaagatcttg gtgcgtatgg
1141 gctagagatc ctaaagttag tcatgaagtg gttcttcccg aagaaagagg aagcaaatga
1201 actggctatg gtgagatcca tcgaggatgc agtactggac cttgaggcaa ttgaaaacaa
1261 ccatatgacc accttgctca aagacaaaga cagcctggca acctatatga gaacccttga
1321 cctcgaggaa gagaaagcca gaaaactctc aaccaagtct gcttcacctg acatcgtggg
1381 cacaatcaac gcccttctgg cgagaatcgc cgctgcacgc tccctggtgc accgagcgaa
1441 ggaggagctt tccagcagac caagacctgt agtcttgatg atatcaggca gaccaggaat
1501 agggaagacc caccttgcta gggaagtggc taagagaatc gcagcctccc tcacaggaga
1561 ccagcgtgta ggcctcatcc cacgcaatgg cgtcgatcac tgggatgcgt acaaggggga
1621 gagggtcgtc ctatgggacg actatggaat gagcaatccc atccacgacg ccctcaggct
1681 gcaagaactc gctgacactt gccccctcac tctaaattgt gacaggattg agaataaagg
1741 aaaggtcttt gacagcgatg tcattattat cactactaac ctggccaacc cagcaccact
1801 ggactatgtc aactttgaag cgtgctcgag gcgcatcgat ttcctcgtgt atgcagaagc
1861 ccccgaggtc gaaaaggcaa agcgtgactt cccgggtcaa cctgacatgt ggaaaaacgc
1921 ttttagttct gatttctcac acataaaatt ggcactggct ccacaaggtg gttttgataa
1981 gaacgggaac accccacacg ggaagggcgt catgaagact ctcaccactg gttccctcat
2041 tgctcgagca tcagggctac tccatgagag gttggatgag tttgaactac agggcccagc
2101 tcttaccacc ttcaactttg accgcaacaa agtgcttgct ttcaggcagc ttgctgctga
2161 aaacaaatac gggttgatgg acacaatgaa agttgggagg cagctcaagg atgtcaaaac
2221 catgccagaa cttaaacaag cactcaagaa tatctcaatc aagaagtgcc agattgtgta
2281 tagtggttgc acctacacac ttgagtctga tggcaagggc aatgtgaaag ttgacagagt
2341 tcagagcacc tccgttcaga ccaacaatga gctggctggc gccctgcacc atctaaggtg
2401 cgccagaatc aggtactatg tcaagtgtgt tcaggaggcc ctgtattcta tcatccagat
2461 cgctggggct gcatttgtca ccacgcgcat catcaagcgc gtgaacattc aagacttatg
2521 gtccaagcca caagtggaaa acacagagga ggccaccaac aaggacgggt gcccgaaacc
2581 caaagatgat gaggagttcg tcatttcatc tgacgacatt aaaactgagg gtaagaaagg
2641 gaagaacaag actggccgtg gcaagaagca cacagccttc tcaagtaaag gtctcagtga
2701 tgaagagtat gatgagtaca agagaattag agaggaaagg aatggcaagt actccataga
2761 agagtacctt caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgaccga
2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttca gaccaacaag
2881 gaagcaacgc aaggaagaaa gagcttctct cggtttagtc acaggttctg aaattaggaa
2941 gaggaaccca gaagacttca agcctaaggg gaaactatgg gctgacgatg acagaagtgt
3001 ggactacaat gaaaaactca gctttgaggc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggctca ggttggggct tctgggtctc ccccagcctg ttcataacat caacccacgt
3121 cataccccag ggcgcaaagg agttctttgg aatccccatc aaacaaattc aggtacacaa
3181 gtcaggcgaa ttctgtcgct tgaggttccc aaaaccaatc aggactgatg tgactggcat
3241 gatcttggaa gaaggtgcgc ccgaaggcac cgtggtcaca ctactcatca aacggtctac
3301 tggagaactc atgcccctag cagctagaat ggggacccat gcaaccatga aaatccaagg
3361 gcgcactgtt ggaggtcaga tgggcatgct tctgacagga tccaacgcca aaagcatgga
3421 tctaggcacc acaccaggtg attgcggctg tccctacatc tacaagagag gaaatgacta
3481 tgtggtcatt ggagtccaca cggctgccgc tcgtggggga aacactgtca tatgtgccac
3541 ccaggggggt gagggggaag ctacacttga aggtggtgac agtaagggaa catactgtgg
3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaaaacca aattctggag
3661 atcatccaca gcaccactcc cacctggcac ctatgaacca gcctaccttg gtggcaagga
3721 ccccagagtc aaggatggcc cctcgttgca gcaagtcatg agggaccagc tgaaaccatt
3781 tacagagcct aggggtaagc caccaaagcc aagtgtatta gaagctgcca agaaaaccat
3841 catcaatgtc cttgaacaaa caattgaccc acctgagaag tggtcgttcg cacaagcttg
3901 cgcgtccctt gacaagacca cttctagcgg ccatccgcac cacatgcgga aaaacgactg
3961 ctggaacggg gaatccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat
4021 gtttgaagaa gggaagaaca tgaccccagt ctacacaggt gcacttaagg atgaattagt
4081 caaaactgac aagatttatg gtaagatcaa gaagaggctt ctctggggct cggatttggc
4141 aaccatgatc cggtgtgctc gagcattcgg aggcctaatg gatgaactca aagcacactg
4201 tgtcacactt cctatcagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga
4261 gaagcattcc aggtacaggt accactatga tgctgattac tctcggtggg attcaacaca
4321 acagagagcc gtgctggcag ccgctctaga aatcatggtt aaattctccc cagaaccaca
4381 tttggctcag gtagtagcag aagaccttct ttctcctagc gtggtggatg tgggtgactt
4441 cacaatatca atcaatgagg gccttccctc tggggtgccc tgcacctccc aatggaactc
4501 catcgcccac tggcttctca ctctctgtgc actctccgaa gttacaaatt tgtccccaga
4561 catcatacag gctaattctc tcttctcctt ctatggtgat gatgaaattg ttagtacaga
4621 cataaaatta gacccagaga agttgacagc aaagcttaag gaatacgggt tgaaaccaac
4681 ccgccctgat aaaactgaag gacctcttgt tatttctgag gacttagatg gtttgacttt
4741 cctgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagttc
4801 aatactcagg caaatgtact ggactagggg ccccaaccat gaagacccat ctgaatcaat
4861 gattccacac tctcaaagac ccatacaatt gatgtcctta ctgggagagg ccgcactcca
4921 cggcccaaca ttctacagta aaatcagcaa attagttatt gcagagctaa aagaaggtgg
4981 tacggatttt tacgtgccca ggcaagagcc aatgttcaga tggatgagat tctcagacct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccaa cccatctgat gggtccgcag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggcttt ggagcccgtt gtcggtgccg ctattgcggc gcctgtagcg ggccaacaaa
5221 atgtgattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagttcacag
5281 tatcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttaggc cctgatctga
5341 atccctacct atcccatttg gccagaatgt ataatggtta tgcaggtggt tttgaagtgc
5401 aggtgatcct cgcggggaac gcgttcaccg ccggaaaaat tatatttgca gcagtcccac
5461 caaattttcc aactgaaggc ttgagtccca gccaggtcac tatgttcccc cacataatag
5521 tggatgttag gcaattggaa cctgtgttga tccccttacc tgatgttagg aataacttct
5581 accactataa tcagtcaaat gatcctacca ttaaattgat agcaatgctg tatacaccac
5641 ttagggctaa taatgctggg gaggatgtct tcacagtctc ttgtcgagtt ctcacgaggc
5701 catcccctga ttttgatttt atatttttgg tgccacctac agttgagtca agaactaaac
5761 catttactgt cccaatccta actgttgaag aaatgaccaa ttcaagattc cccattcctt
5821 tggaaaaatt gtttacgggt cccagcagtg cctttgttgt tcaaccacaa aatggcagat
5881 gcacgactga tggcgtgctc ttaggcacca cccaactgtc tcctgtcaac atctgcacct
5941 tcagagggga tgtcacccac attgcaggtt ctcgtaatta cacaatgaat ttggcttctc
6001 taaattggaa caattatgac ccaacagaag aagttccagc ccctctagga actccagatt
6061 tcgtgggaaa gatccaaggt gtgctcactc aaaccacaaa gggagatggt tcgacccgtg
6121 gccataaagc tacagtttac actgggagtg ccccctttac tccaaagctg ggcagtgttc
6181 aattcagtac tgatacagaa aatgattttg aaactcacca aaacacaaaa ttcaccccag
6241 tcggtgtcat ccaggatggt agcaccaccc accgaaatga accccaacaa tgggtgctcc
6301 caagttattc aggtagaaat gtccaaaatg tacacctagc ccctgctgta gcccccactt
6361 ttccgggtga acaacttctt ttctttaggt ccactatgcc cggatgcagc gggtatccca
6421 acatggattt ggattgccta ctcccccagg agtgggtgca gcacttctac caagaggcag
6481 ctccagcaca atctgatgtg gctctattga gatttgtgaa tccagacacg ggtagggtcc
6541 tgtttgagtg caagcttcat aaatcaggct atgtcacagt ggctcacacc ggccagcatg
6601 atttggtcat cccccccaat ggttatttta ggtttgattc ctgggttaat caattctaca
6661 cacttgcccc catgggaaat ggaacggggc gcaggcgtgc attataatgg ctggagcttt
6721 ctttgctgga ttggcatctg atgtccttag ctctggactt ggttccctaa tcaatgctgg
6781 ggctggggct atcaaccaaa agattgattt tgaaaataac agaaaattgc agcaagcttc
6841 cttccagttt agcagtaatc tacaacaggc ttcctttcaa catgataaag agatgctcca
6901 agcacaaatt gaggccacta aaaagttgca acaggaaatg atgaaagtca aacaggcaat
6961 gcttttagaa ggtggattct ctgaaacaga tgcagcccgt ggggcaatca acgcccctat
7021 gacaaaggct ttggactgga gcgggacaag gtactgggcc cctgatgcta ggactacaac
7081 atacaatgca ggccgttttt ccacccctca accttcgggg gcactgccag gaagaaacaa
7141 tcccaggact cctacccccg ctcggggctc ccccagcaca tcttctaatg cttctactgc
7201 tacttctata tattcaaatc aaactgtttc aacgagactt ggttctacag ctggttctgg
7261 caccaatgtc tcgagtcccc cgtcaactgc aaggactagg agttgggttg aggatcaaaa
7321 cagaaatttg tcacctttca tgaggggggc tcacaacata tcgtttgtca ccccaccatc
7381 tagcagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg
7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgta ggcgagggga
7501 gtcacgggtg taatgtgaaa aggcaaaatt gattatcttt tcctttcttt agtgtcttt
//