Typing tool
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Typing tool
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Complete norovirus genomes
| EU921389 | GII.3 | |
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| GII.P21 |
ORF1: 5..5104
ORF2: 5085..6731
ORF3: 6731..7495
LOCUS EU921389 7547 bp ss-RNA linear VRL 12-JUN-2015
DEFINITION Norovirus Hu/Pune/PC52/2007/India strain PC52 nonstructural
polyprotein, capsid protein, and VP2 genes, complete cds.
ACCESSION EU921389
VERSION EU921389.2
KEYWORDS .
SOURCE Norovirus Hu/Pune/PC52/2007/India
ORGANISM Norovirus Hu/Pune/PC52/2007/India
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7547)
AUTHORS Chhabra,P., Dhongade,R.K., Kalrao,V.R., Bavdekar,A.R. and
Chitambar,S.D.
TITLE Epidemiological, clinical, and molecular features of norovirus
infections in western India
JOURNAL J. Med. Virol. 81 (5), 922-932 (2009)
PUBMED 19319938
REFERENCE 2 (bases 1 to 7547)
AUTHORS Chhabra,P., Walimbe,A.M. and Chitambar,S.D.
TITLE Complete genome characterization of Genogroup II norovirus strains
from India: Evidence of recombination in ORF2/3 overlap
JOURNAL Infect. Genet. Evol. 10 (7), 1101-1109 (2010)
PUBMED 20633703
REFERENCE 3 (bases 1 to 7547)
AUTHORS Chhabra,P., Dhongade,R.K., Kalrao,V.R., Bavdekar,A.R. and
Chitambar,S.D.
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2008) Rotavirus Department, National Institute of
Virology, 20-A, Dr. Ambedkar Road, Pune, Maharashtra 411001, India
REFERENCE 4 (bases 1 to 7547)
AUTHORS Chhabra,P., Dhongade,R.K., Kalrao,V.R., Bavdekar,A.R. and
Chitambar,S.D.
TITLE Direct Submission
JOURNAL Submitted (03-AUG-2010) Rotavirus Department, National Institute of
Virology, 20-A, Dr. Ambedkar Road, Pune, Maharashtra 411001, India
REMARK Sequence update by submitter
COMMENT On Aug 3, 2010 this sequence version replaced EU921389.1.
FEATURES Location/Qualifiers
source 1..7547
/organism="Norovirus Hu/Pune/PC52/2007/India"
/mol_type="genomic RNA"
/strain="PC52"
/host="Homo sapiens"
/db_xref="taxon:585803"
/country="India"
CDS 5..5104
/note="ORF1; contains NTPase, 3A-like protein, VPg,
protease, and RdRp"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ADK94753.1"
/translation="MKMASNDASAAAVANSNNDNAKSSSDGVFSNMAVTFKRALGARS
KQPPPRDKPPKPPRPPTPELVKAIPPPPPNGEDEPIISYNVKEGVSGLPELSTVTQLE
ESSTAFSVPPLSQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLYWRPVYTPQYLISPDTLRKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDTKVKKVANVVLCALSSLFTRPIKDIIGK
LKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEKNELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDMEEEKARKLST
KSASPDIVGTINALLSRIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIASSLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK
AKRDFPGQPDMWKDTFKPDFSHIKLTLAPQGGFDKNGNTPHGKGIMKTLTASSLVARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLVDTMRVGSQLKNVKTM
TELKQALKNISVKKCQLVYGGGTYTLESDGKGNVHVEKVNNTSVQTNNELSGALHHLR
CARIRYYVKCVQEALYSILQIAGAAFITTRIAKRMNIQNLWSKPQAEDLEETNNEEGC
PKPKNDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTVAARGGNTVICATQGNEGEAMLEGGDNKGTYCGAPILG
PGNAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWTYAQACASLDKTTSSGHPYHMRKNDCW
NGETFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGTIKKRLLWGSDL
STMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTTKLK
EYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP
NHEDPFETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6731
/note="structural protein; ORF2; VP1"
/codon_start=1
/product="capsid protein"
/protein_id="ACL31361.2"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKIDTTSGRFTPKLGSLEISTESDDFDQNKP
TRFTPVGIGVDHEADFQQWALPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYINPDTGRVLFEAKLHKLGFITIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
CDS 6731..7495
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="ADK94752.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTNQTVHRSTPNFKTNQAPKPTPSSGSSVRSNSTQITSLSS
HSSGSSRSSGSTVVNSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga
61 caacgcaaaa tcttcaagtg acggagtatt ttctaatatg gctgtcactt ttaaacgagc
121 cctcggggcg cggtctaaac agccgccccc gagggacaaa ccaccaaaac ccccaagacc
181 acccacacca gaattggtta aagcaatccc ccctccccca cccaacgggg aggacgaacc
241 aatcatttct tacaacgtca aagagggtgt ttctggtttg cctgaactct caactgtcac
301 ccaactggaa gagagctcta cagcattcag cgttccccct cttagccaga gggagaacag
361 agatgcaaag gaaccattga ctggaaccat cctggagatg tgggacgggg agatctacca
421 ttatggctta tacgtggaac gaggattagt gctaggtgta cacaaaccac cagcagccat
481 cagccttgct aaggttgagc tgaccccctt gtctttgtat tggagaccag tgtacacccc
541 acagtacctc atttcccctg acactctcag aaagttgcat ggggagacgt tcccttatac
601 agcctttgac aacaactgtt atgccttctg ctgttgggta cttgacttga acgattcatg
661 gctgagtaga aggatgatac agaggacaac aggcttcttc cgaccctacc aggactggaa
721 caggaaaccc ctccccacga tggatgacac caaagtgaaa aaggtggcca atgttgtcct
781 ctgtgctctc tcatcattgt ttacaagacc aattaaggac attattggga agttgaaacc
841 cctaaacatc ctcaacatcc tagccacatg tgattggact tttgcaggca tagtggaatc
901 cctgatcctt ttggctgaac tgtttggagt tttctggaca cccccagatg tgtctgcaat
961 gatcgctccc ttactgggtg attatgagct gcagggaccc gaggacctcg ctgtggaact
1021 cgtacccgta gtaatgggag ggataggttt ggtgctggga ttcaccaaag agaaaatcgg
1081 caaaatgctt tcatctgctg cttcaaccct gagggcatgc aaagatctcg gtgcatatgg
1141 gttggagatc ctcaagttgg tcatgaaatg gtttttccca aagaaagaag agaaaaacga
1201 attggcaatg gtgagatcca tcgaggatgc agtgctagat cttgaggcca ttgagaacaa
1261 ccatatgact gctctactca aggataaaga cagccttgca acctacatga ggacccttga
1321 catggaggag gagaaggcga ggaaactttc caccaagtct gcctcgccgg atattgtggg
1381 cacgataaac gccctactgt caaggattgc tgctgcccgg tctctagtgc acagggctaa
1441 ggaggagctg tcaagcaggc cccgaccggt cgttgtaatg atttcaggga gaccaggcat
1501 agggaaaacc catctagcta gagagttggc aaagaagatc gcctcctcac tcacaggtga
1561 ccagagggtg ggtcttatcc cacgcaacgg ggtcgaccac tgggatgcat acaaaggtga
1621 aagagtcgtt ctctgggacg actacgggat gagtaaccct atccacgacg ccctcagact
1681 ccaggagctc gctgatacct gtcctcttac actcaactgt gacaggattg agaacaaagg
1741 caaagtcttt gacagtgacg ccataataat aaccaccaat ttggccaacc cagcgccact
1801 ggattacgtc aactttgaag cctgctcaag acgcatagac ttcctcgtct atgctgatgc
1861 ccctgaagtt gagaaggcta aacgggactt cccaggccaa ccagacatgt ggaaagacac
1921 ctttaaacct gacttctcac acataaaact gacattagcc ccgcaaggag gttttgacaa
1981 gaatggtaac actcctcatg ggaagggtat catgaagacc ctcactgcca gttccctcgt
2041 tgcccgagca tcagggctcc tccacgagag attagacgaa tatgagctgc agggcccaac
2101 tcccacaaca ttcaacttcg accgcaacaa ggtgcttgct tttaggcagc ttgctgctga
2161 aaacaagtac ggtcttgttg acacaatgag ggtcggatca cagctcaaga atgtcaaaac
2221 tatgacagaa ctcaagcagg ctctcaagaa catctcagtc aagaaatgtc agcttgtgta
2281 tggtgggggc acgtacacac ttgaatctga tggcaaaggc aatgtgcatg tcgagaaggt
2341 gaacaacacc agtgtgcaaa ctaacaacga gctctccggg gctttgcacc atctcaggtg
2401 tgccagaatc aggtactatg ttaagtgtgt ccaggaagct ctctactcca tcttgcaaat
2461 tgctggggct gcattcatta ccacgcgcat tgcaaagcgc atgaacatac aaaacctctg
2521 gtccaaacca caagcagaag atctggagga gactaacaat gaggagggtt gtccaaaacc
2581 taaaaatgat gaggagtttg tcatctcctc tgatgacatc aaaaccgagg gcaagaaagg
2641 aaagaacaag actggccgtg gcaagaagca tacagccttt tccagcaaag gactcagtga
2701 tgaggagtac gatgaatata aaagaatcag ggaagagaga aatggcaagt actccataga
2761 ggaataccta caggacagag acaaatacta tgaggaggtg gccatagcca gggcaactga
2821 ggaagacttc tgtgaagaag aggaggcaaa aatccggcaa aggatattta gaccaacaag
2881 gaaacaacgc aaagaggaaa gggcctctct tggtttggtt acaggttctg agatcaggaa
2941 gagaaaccca gatgacttca agcccaaagg gaaactatgg gccgatgatg acaggagtgt
3001 tgactacaat gagaaactta gtttcgaggc tccaccaagc atttggtcac gaatagtcaa
3061 ctttggctca gggtggggct tttgggtctc gcccagcctc ttcataacat caacccatgt
3121 cattccccaa ggcgcacagg agttctttgg agtgcccatc aaacaaatac aaattcacaa
3181 gtcaggtgag ttctgccggc ttaggttccc aaaaccaatc aggacagatg tcacaggcat
3241 gatcttggag gaaggtgctc cagaaggcac tgttgccaca cttctcatca agagaccaac
3301 tggagaactc atgcccttgg cagccagaat gggcacccac gcgaccatga aaattcaggg
3361 tcgcactgtt ggtggtcaga tgggcatgtt actcacaggg tctaacgcta agagcatgga
3421 cttgggtaca actcctggcg attgtggttg tccctatatc tacaagagag ggaacgacta
3481 cgtggtcatt ggagttcaca ctgtcgccgc tcgtggggga aacaccgtca tctgtgcaac
3541 ccaaggaaac gagggtgagg ccatgctaga aggtggtgac aacaagggaa cttattgtgg
3601 agcaccaata ttaggcccag ggaatgcccc caaactcagc accaaaacca aattctggag
3661 gtcttccacc acccccctgc cacccggaac ctatgagcca gcttatctgg gtggcaagga
3721 ccctagagtg aaaggtggcc cctcactgca acaggttatg agggaccaac taaaaccatt
3781 cactgagccc agaggcaaac cacccaaacc aagtgtgcta gaagccgcca agaagactat
3841 aatcaatgtg cttgaacaaa caatagaccc acctcaaaaa tggacatacg cacaggcgtg
3901 tgcatcacta gacaagacca cttccagcgg ccacccttac cacatgcgga agaacgattg
3961 ctggaatggg gagactttca caggaaaact ggcagaccaa gcatcaaagg ctaacctaat
4021 gtttgaggaa ggaaagaaca tgaccccagt atacacagga gctctgaaag atgagctagt
4081 caagactgat aagatctatg gaacaatcaa gaagagactc ctgtggggtt cagacctatc
4141 aaccatgata cggtgtgcac gagccttcgg tgggctaatg gacgaactca aggcccattg
4201 cgtcacacta ccagtcaggg ttggtatgaa catgaatgag gatggaccca taatatttga
4261 gaaacattcc agatacaaat accattatga tgcagattac tcccgttggg actcaacaca
4321 acaaagagca gtgctggctg cagccctgga aataatggtc aaattctcac cagaacccca
4381 tctggcccaa gtggttgctg aagacctctt gtcccccagt gtgatggatg tgggtgactt
4441 caagatatca atcaacgagg gattaccctc tggtgttccc tgcacctcac aatggaactc
4501 cattgcccac tggctcctca cactatgtgc actgtctgaa gtcacagacc tgtcccctga
4561 catcatccag gcaaattccc tgttctcctt ttatggtgat gatgaaatag tgagcacaga
4621 tattaaactg gacccagaga aattaacaac aaaattgaag gaatacgggc taaaaccaac
4681 ccgtcctgac aaaacagaag gacccttaat tatctctgaa gatttggatg gcctgacctt
4741 cttacggaga acggtgaccc gtgatccggc cgggtggttt ggcaaactgg accaaagttc
4801 aatactcagg cagatgtact ggaccagggg accaaaccat gaggacccct tcgaaacaat
4861 gataccacac tcccaaagac ccatacaact gatgtcatta ttgggtgaag ctgcgttgca
4921 tggtccatca ttctacagta aaatcagcaa attggtcatc tcagaattga aagagggtgg
4981 aatggatttt tacgtgccca gacaagaacc aatgttcagg tggatgagat tctcagattt
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccgc tccatctaat gatggtgccg ccggcctcgt cccagagatc aacaatgagg
5161 caatggcgct agagccagtg gcgggtgcag cgatagcagc acccctcact ggtcagcaaa
5221 atataattga tccctggatt atgaataatt ttgtgcaagc acctggtggt gagtttacag
5281 tatcccctag aaattcccct ggtgaagttc ttcttaattt ggaattgggc ccagaaataa
5341 atccctattt ggcccatctt gctagaatgt ataatggtta tgcaggtgga tttgaagtgc
5401 aggtggtcct agctggaaat gcgtttacag caggaaagat aatctttgca gctattcccc
5461 ctaattttcc aattgataat ctaagtgcag cacagatcac aatgtgtcca catgtgattg
5521 tggatgtcag acagctggaa ccagtcaacc tcccaatgcc tgacgttcgt aacaacttct
5581 ttcattacaa tcaagggtct gattcgagat tgcgcctaat tgcaatgctg tatacacctc
5641 ttagggcaaa taattctggg gatgatgttt ttactgtgtc ttgcagagtg ctaactagac
5701 ctagtcctga cttctcattt aatttccttg tgccacctac tgtggagtca aagacaaaac
5761 ccttttccct ccctattctg actatctctg aaatgtctaa ttctaggttc ccagtaccaa
5821 ttgattctct gcacaccagc cctactgaga acattgttgt ccagtgtcag aatggacgcg
5881 tcacccttga tggtgagttg atgggcacca cccaactctt acctagccaa atctgtgctt
5941 tcaggggcgt gctcaccaga tcaacaagca gggccagtga ccaggccgat acagcaaccc
6001 ctagattgtt taattattat tggcatatac agttggataa tctaaatgga actccttatg
6061 accctgcaga agatatacca ggccccctag ggacaccaga ttttcggggc aaagtctttg
6121 gcgtggccag ccagagaaat cctgatagca cgactagggc acatgaagca aagatagaca
6181 caacatctgg ccgtttcacc ccaaaactag gctcattaga gatttccact gagtctgatg
6241 attttgatca aaacaaacca acaagattca ccccagttgg cattggggtt gaccatgagg
6301 cagactttca acaatgggct cttcccgact atgctggcca gttcacccac aacatgaact
6361 tagccccagc tgttgctccc aactttcctg gtgagcagct ccttttcttc cgctcacagt
6421 tgccatcttc tggtgggcga tccaacggga ttctagactg cctggtcccc caagaatggg
6481 tacagcactt ctaccaagaa tcagccccct cccaatctca agtggccctg gttaggtata
6541 tcaaccctga cactggtaga gtgttatttg aggccaagct gcacaaatta ggtttcataa
6601 ctatagccaa gaatggtgac tctccaataa ctgtccctcc aaatggatac tttaggtttg
6661 aatcttgggt gaaccccttt tatacacttg cccccatggg aactgggaat gggcgtagaa
6721 ggattcaata atggctggag cttttatagc aggattggct ggtgacatgc tcacaaatac
6781 tgtaggatct ttagttaatg caggggctaa tgccattaat caaacaattg attttgaaaa
6841 taataaatat ttgcaaaatg cctcttttaa tcatgataag gagatgttga acgcacaaat
6901 tgaggcaaca aagagattac aggctgacat gattgctatc aaacaagggg ttttgaccgc
6961 tggcggcttc tcccctactg atgcagcccg cggggcaatc aatgccccca tgacaaaagt
7021 cctagattgg aatggaacga gatactgggc accaggtgcc acctccacaa cctcgatgtc
7081 gggtggcttc acaaatcaaa ctgtgcacag atccacacca aattttaaaa cgaaccaggc
7141 ccccaaaccc acacccagca gtgggtcttc agtgaggtca aattcaaccc aaatcactag
7201 cctgagttca cactcgtccg ggtcgtctcg atccagcggg tctacagttg tcaactcaat
7261 accatcctct aacaggacta gggactgggt caaccaacaa aattttaatt tggaaccaca
7321 catgcctgga tctcttagga cagcttttgt cactccacca tctagtacag cctctagctc
7381 aggcacagtc tcaactgtgc ccaaaaatgt tttggactcc tggacatctg cgtttaacac
7441 gcgcagacaa ccgctattcg cacaccttcg cagaaggggg gagtcgaatg tttagtgaaa
7501 agattatttt aaatttgatt taaattggat ttgatttgga atctttt
//