Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| EU921388 | GII.4 Osaka | |
|
|---|---|---|---|
| GII.P31 |
ORF1: 5..5104
ORF2: 5085..6707
ORF3: 6707..7513
LOCUS EU921388 7559 bp ss-RNA linear VRL 12-JUN-2015
DEFINITION Norovirus Hu/Pune/PC51/2007/India strain PC51 nonstructural
polyprotein, capsid protein, and VP2 genes, complete cds.
ACCESSION EU921388
VERSION EU921388.2
KEYWORDS .
SOURCE Norovirus Hu/Pune/PC51/2007/India
ORGANISM Norovirus Hu/Pune/PC51/2007/India
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7559)
AUTHORS Chhabra,P., Dhongade,R.K., Kalrao,V.R., Bavdekar,A.R. and
Chitambar,S.D.
TITLE Epidemiological, clinical, and molecular features of norovirus
infections in western India
JOURNAL J. Med. Virol. 81 (5), 922-932 (2009)
PUBMED 19319938
REFERENCE 2 (bases 1 to 7559)
AUTHORS Chhabra,P., Walimbe,A.M. and Chitambar,S.D.
TITLE Complete genome characterization of Genogroup II norovirus strains
from India: Evidence of recombination in ORF2/3 overlap
JOURNAL Infect. Genet. Evol. 10 (7), 1101-1109 (2010)
PUBMED 20633703
REFERENCE 3 (bases 1 to 7559)
AUTHORS Chhabra,P., Dhongade,R.K., Kalrao,V.R., Bavdekar,A.R. and
Chitambar,S.D.
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2008) Rotavirus Department, National Institute of
Virology, 20-A, Dr. Ambedkar Road, Pune, Maharashtra 411001, India
REFERENCE 4 (bases 1 to 7559)
AUTHORS Chhabra,P., Dhongade,R.K., Kalrao,V.R., Bavdekar,A.R. and
Chitambar,S.D.
TITLE Direct Submission
JOURNAL Submitted (03-AUG-2010) Rotavirus Department, National Institute of
Virology, 20-A, Dr. Ambedkar Road, Pune, Maharashtra 411001, India
REMARK Sequence update by submitter
COMMENT On Aug 3, 2010 this sequence version replaced EU921388.1.
FEATURES Location/Qualifiers
source 1..7559
/organism="Norovirus Hu/Pune/PC51/2007/India"
/mol_type="genomic RNA"
/strain="PC51"
/host="Homo sapiens"
/db_xref="taxon:585802"
/geo_loc_name="India"
CDS 5..5104
/note="ORF1; contains NTPase, 3A-like protein, VPg,
protease, and RdRp"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ADK94751.1"
/translation="MKMASNDASAAAVANSNNDIAKSSSDGVLSNMAVTFKRALGARP
KQPPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVKQPE
ETNTAFSVPPLNQRENRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK
LKPLNILNILATCDWTFAGIVESLILMAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILNLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLAREL
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTLTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLRDVKTM
PDLKQALKNVSIKKCQIVYGGSTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRITKRMNIQNLWSKPQVEDTEEAASKDGC
SRPKDDEEFVVSSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRNFQPTRKQRKEERASLGLV
TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGTKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWTYAQACASLDKTTSSGHPYHMRKNDCW
NGETFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGTIKKRLLWGSDL
STMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6707
/note="structural protein; ORF2; VP1"
/codon_start=1
/product="capsid protein"
/protein_id="ACL31360.2"
/translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLERLYTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSAVNICTFRGDVTHIAGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRSDGSTRGHKATVLTGSADFAPKLGRVQFATDTDNDFESGQNTKFTPVGVIQDG
STTHRNEPQQWVLPNYSGRTGHNVHLAPAVAPTYPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
CDS 6707..7513
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="ADK94750.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALSGRINPRTPTPARGSSSTSS
NASTATSVYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgccaaca gcaacaacga
61 catcgcaaaa tcttcaagtg acggtgtgct atctaacatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcctaaac agccgccccc gaaggaaata ccacccagac ccccacgacc
181 acccacacca gaattggtca aaaagatccc tcctccccca cccaacgggg aggatgaact
241 agtggtttcc tacagcgcca aagatggcgt ttccggcctg cctgagctca ccactgtcaa
301 acaaccggaa gaaaccaaca cggcgttcag tgttccccca ctcaaccaga gggagaatag
361 ggacgccaag gaaccactaa ctggaacaat tattgaaatg tgggatggag aaatatacca
421 ctacggcctg tatgtggaac gaggtcttat acttggtgtg cacaagccac cggcagccat
481 cagccttgcc aaggtcgagc taacaccact ctctttgttc tggagacctg tatacacccc
541 ccagtatctc atctctccag acactcttag gagactgcat ggagagtcat tcccctacac
601 tgcatttgac aacaattgct acgccttctg ttgttgggta ttagacctaa acgactcatg
661 gctaagcagg agaatgattc agagaacaac aggtttcttc aggccatacc aggattggaa
721 caggaaaccc cttcccacta tggatgattc caaattaaag aaggtggcta acatattctt
781 gtgcactttg tcttcactat tcaccagacc cattaaggac ataataggga agttgaaacc
841 tcttaacatt ctcaacattc tggctacgtg cgattggacc ttcgcaggca tagtggagtc
901 cttgatactc atggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgcccct ttactaggtg attacgagct gcaaggacct gaggaccttg cagtagaact
1021 agtcccaata gtgatggggg gaataggttt ggtgctagga tttaccaaag agaaaattgg
1081 aaagatgttg tcatctgctg catccacttt gagagcctgt aaagaccttg gtgcatacgg
1141 actggaaatt ttgaatttgg tcatgaaatg gttctttcct aagaaagagg aagcaaacga
1201 attggctatg gtgagatcca tcgaggatgc ggtgctggac ctcgaggcaa ttgaaaacaa
1261 ccacatgacc accctgctca aagacaaaga cagcttggca acctacatga gaacccttga
1321 ccttgaggag gagaaagcca gaaaactctc aaccaaatct gcttcacccg acattgtggg
1381 cacaatcaac tctcttctgg caagaatcgc tgctgcacgc tccctagtgc atcgggcgaa
1441 agaagagctc tccagcaggc cgagacctgt tgttgtgatg atatcgggaa aaccagggat
1501 agggaaaact caccttgcca gggagctggc caagagaatc gcagcctccc tcacagggga
1561 ccagcgcgtg ggtctcatcc cgcgcaatgg tgtcgaccat tgggacgcgt acaagggaga
1621 aagggttgtc ctgtgggacg actatggaat gagtaacccc atccatgatg ccctcaggtt
1681 gcaggaactt gctgacactt gccccctcac gctaaattgt gacaggattg agaacaaagg
1741 gaaagtcttt gacagtgatg ccataattat caccaccaat ctggccaacc cagcaccact
1801 ggattatgtc aactttgaag cgtgctcgag gcgcattgac ttcctcgtgt acgcagaagc
1861 tcctgaggtg gaaaaagcaa agcgcgactt cccaggccaa cctgacatgt ggaagaacgc
1921 tttcagtcct gacttctcgc acataaaact gtcattggct ccacagggtg gttttgataa
1981 gaacggcaac accccacatg gaaaaggcgt catgaagacc ctcactactg gttccctcat
2041 cgcccgagca tcagggttac tccatgagag gctagatgaa tatgaattgc aaggcccaac
2101 tctcaccact ttcaactttg accgcaacaa gatccttgct ttcagacagc ttgctgctga
2161 aaacaagtat gggctcatgg acacaatgag agttggaaaa cagctcaggg atgtcaagac
2221 catgccagac ctcaaacaag cactcaagaa tgtctcgatc aaaaagtgcc agatagtgta
2281 cggtggtagc acctacacac ttgaggccga tggcaagggc agtgtgaaag ttgacaaagt
2341 gcaaagtgcc actgtgcaaa ccaacaacga actagccggt gccctacacc acctaaggtg
2401 cgccagaatt agatactatg tcaagtgtgt ccaggaggca ctgtactcca tcatccaaat
2461 tgctggggct gcatttgtca ccacgcgcat tactaagcgc atgaacatac agaacctctg
2521 gtccaagcca caggtggagg acacagaaga ggcggccagc aaagatggtt gctcaagacc
2581 caaagatgat gaagagtttg tcgtttcatc cgacgacatc aaaactgagg gcaagaaagg
2641 gaaaaacaag actggccgtg gtaagaagca cacagccttc tcaagcaaag ggctcagtga
2701 tgaggagtac gatgagtaca agagaatcag agaagagagg aatggcaagt actccataga
2761 agagtacctt caggacagag acaagtacta tgaggaggtg gccattgcca gggcaaccga
2821 agaggacttc tgtgaagaag aagaggccaa aatccggcag aggaattttc aaccaacaag
2881 gaaacaacgc aaagaagaga gggcctctct cggcttggtc acaggctctg aaatcaggaa
2941 gagaaaccca gaagacttca aacccaaggg aaaactgtgg gccgacgatg acagaagtgt
3001 tgactacaat gagaaactca actttgaggc cccaccaagc atctggtcgc ggatagtcaa
3061 ctttggttca ggttggggct tctgggtctc ccccagtctg tttataacat caacccatgt
3121 cataccccaa ggtacaaaag agttcttcgg agtccccatc aaacaaatcc agatacacaa
3181 atcaggtgaa ttctgccggt taaggttccc aaaaccaatc agaactgatg tgacgggcat
3241 gattctagaa gaaggtgcgc ccgaaggaac cgtggccaca ctactcatca agagaccaac
3301 tggggaactc atgcctctgg cagctagaat gggaacccat gcaaccatga agattcaagg
3361 gcgcacagtt ggaggacaaa tgggcatgct cctgacagga tccaacgcca agagtatgga
3421 cctaggcaca acaccgggtg actgcggctg tccctacatc tacaagaggg ggaatgacta
3481 cgtggtcata ggagtccata cggccgctgc ccgtggagga aacactgtca tatgtgccac
3541 ccaggggagt gaaggggaag ccacacttga aggtggtgac aataaaggaa catactgtgg
3601 tgcaccaatc ttgggcccag ggagtgcccc aaaactcagt actaagacta agttttggag
3661 atcatccaca acaccactcc cacctggcac ctatgaacca gcctatctcg gtggcaagga
3721 ccccagagtc aaaggtggcc cctcactgca acaggttatg agggaccaac taaaaccatt
3781 cactgagccc agaggcaaac cacccaaacc aagtgtgcta gaagccgcca agaagactat
3841 aatcaatgtg cttgaacaaa caatagaccc acctcaaaaa tggacatacg cacaggcgtg
3901 tgcatcacta gacaagacca cttccagcgg ccacccttac cacatgcgga agaacgattg
3961 ctggaatggg gagactttca caggaaaact ggcagaccag gcatcaaaag ctaacctaat
4021 gtttgaggaa ggaaagaaca tgaccccagt atacacagga gctctgaaag atgagctagt
4081 caagactgat aagatctatg ggacaatcaa gaagagactc ctgtggggtt cagacctatc
4141 aaccatgata cggtgtgcac gagccttcgg tgggctaatg gacgaactca aggcccattg
4201 cgtcacacta ccagtcaggg ttggtatgaa catgaatgag gatggaccca taatatttga
4261 gaaacattcc agatacaaat accattatga tgcagattac tcccgttggg actcaacaca
4321 acaaagagct gtgctggctg cagccctgga aatcatggtt aaattctcac cagaaccaca
4381 cctggctcaa atagttgcag aagacctact ttcccctagt gtaatggatg tgggtgactt
4441 tcaaatatca ataagtgagg gactcccctc tggggtgcct tgcacctccc aatggaattc
4501 catcgcccat tggctcctca ctctttgtgc actctctgaa gtcacggacc tgtcccctga
4561 catcatccag gccaattccc ttttctcctt ctatggtgat gatgagattg tgagtacaga
4621 cataaagttg gatccagaga aactgacggc aaaactcaag gagtacgggc tgaaaccaac
4681 ccgccccgac aaaactgaag gaccccttgt tatctctgaa gatctggatg gcctgacatt
4741 cctgcggagg actgtgaccc gtgacccagc tggttggttt ggaaaattgg aacaaagctc
4801 aattctcagg caaatgtact ggaccagggg ccccaaccat gaagatccat ctgaaacaat
4861 gataccacac tcccaaagac ccatacaatt gatgtctctg ctgggcgagg ctgcactcca
4921 cggcccggca ttctatagta aaattagtaa gctagtcatt gcagagttga aggaaggtgg
4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc ccccagtttt gtgaatgaag atggcgtcga
5101 atgacgccaa cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggcttt ggagcccgtt gtaggtgccg ctattgcggc gcctgtagcg ggccaacaaa
5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagtttacag
5281 tgtcccctag aaatgctcca ggtgagatac tatggagtgc gcccttgggc cctgatttga
5341 acccttacct ttctcatctg gccagaatgt ataatggtta tgcaggtggt tttgaagtgc
5401 aggtaatcct cgcggggaac gcgttcaccg ccggaaaaat catatttgca gcagttccac
5461 ctaactttcc aactgaaggc ttgagcccca gccaggttac tatgttcccc catataatag
5521 tagatgttag gcaattggaa cctgtgttga tccccttacc tgatgttagg aataacttct
5581 atcactacaa ccagtcaaat gaccctacca ttaaattgat agcaatgttg tacacaccac
5641 ttagggctaa taatgctggg gatgatgtct tcacagtctc ttgtcgagtc ctcacgagac
5701 cgtcccctga ttttgatttc atatttctgg taccaccaac agttgaatca agaaccaaac
5761 catttaccgt tccaatctta actgttgagg aaatgaccaa ttcaagattc cccattcctt
5821 tggaaaggtt gtacacgggt cccagcagtg cttttgttgt ccagccacaa aacggcaggt
5881 gcacgactga tggcgtgctc ttaggcacca cccagctgtc tgctgtcaac atctgcacct
5941 ttagagggga tgtcactcac attgcaggct ctcgcaatta tacaatgaat ttggcctctc
6001 aaaattggaa caactatgat ccaacagaag aaatcccagc ccccctgggc accccagatt
6061 tcgtgggaaa gatccaaggc atgctcaccc aaaccacaag aagtgatggc tcgacccgcg
6121 gccacaaggc cacagtgctc actgggagtg ccgacttcgc cccaaaattg ggcagagtcc
6181 aattcgccac tgacacagac aacgatttcg aatctggcca aaacacgaaa ttcaccccag
6241 ttggcgtcat ccaggatggt tccactaccc accgaaatga acctcaacaa tgggtactcc
6301 caaattactc aggtagaact ggtcataatg tgcatctagc ccctgctgtt gcccccactt
6361 acccgggtga gcaactcctt ttcttcaggt ccactatgcc cggatgtagc gggtacccca
6421 acatggatct agattgcttg ctcccccagg agtgggtgca gcacttctac caagaagcag
6481 ctccagcaca atctgatgtg gctctgctaa gatttgtgaa tccagacaca ggtagggttc
6541 tctttgagtg caagctccat aaatcaggat atgtcacagt ggctcacact ggtcagcatg
6601 atttggttat tccccccaat ggttatttta gatttgattc ctgggttaat caattctaca
6661 cacttgcccc catgggaaat ggaacggggc gtagacgtgc tgtataatgg ctggagcttt
6721 ctttgctgga ttggcatctg atgtccttgg ctctggactt ggttccctaa tcaatgctgg
6781 ggctggggct atcaaccaaa agattgattt tgaaaataac agaaaattgc agcaagcttc
6841 cttccagttt agcagtaatc tacaacaggc ttcctttcaa catgataaag agatgctcca
6901 agcacaaatt gaggccacta aaaagttgca acaggaaatg atgaaagtca aacaggcaat
6961 gctcttagaa ggtggattct ctgaaacaga tgcagcccgt ggggcaatca acgcccccat
7021 gacaaaggct ttggactgga gcggaacaag gtactgggcc cctgatgcta ggactacaac
7081 atacaatgca ggccgctttt ccacccctca accttcgggg gcattgtcag gaagaatcaa
7141 tcccaggact cccacccccg ctcggggctc ctctagcaca tcttctaatg cttctactgc
7201 tacttctgta tattcaaatc aaactgtttc aacgagactt ggttctacag ctggttctgg
7261 caccaatgtc tcgagtctcc cgtcaactgc aaggactagg agttgggttg aggatcaaaa
7321 cagaaatctg tcacctttca tgaggggggc tcacaacata tcgtttgtca ccccaccatc
7381 tagcagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg
7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgta ggcgagggga
7501 gtcacgggtg taatgtgaaa agacaaaatt gattatcttc cctttcttta gtgtctttt
//