Typing tool
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Complete norovirus genomes
EU921388 | GII.4 Osaka | ||
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GII.P31 |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7513LOCUS EU921388 7559 bp ss-RNA linear VRL 12-JUN-2015 DEFINITION Norovirus Hu/Pune/PC51/2007/India strain PC51 nonstructural polyprotein, capsid protein, and VP2 genes, complete cds. ACCESSION EU921388 VERSION EU921388.2 KEYWORDS . SOURCE Norovirus Hu/Pune/PC51/2007/India ORGANISM Norovirus Hu/Pune/PC51/2007/India Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7559) AUTHORS Chhabra,P., Dhongade,R.K., Kalrao,V.R., Bavdekar,A.R. and Chitambar,S.D. TITLE Epidemiological, clinical, and molecular features of norovirus infections in western India JOURNAL J. Med. Virol. 81 (5), 922-932 (2009) PUBMED 19319938 REFERENCE 2 (bases 1 to 7559) AUTHORS Chhabra,P., Walimbe,A.M. and Chitambar,S.D. TITLE Complete genome characterization of Genogroup II norovirus strains from India: Evidence of recombination in ORF2/3 overlap JOURNAL Infect. Genet. Evol. 10 (7), 1101-1109 (2010) PUBMED 20633703 REFERENCE 3 (bases 1 to 7559) AUTHORS Chhabra,P., Dhongade,R.K., Kalrao,V.R., Bavdekar,A.R. and Chitambar,S.D. TITLE Direct Submission JOURNAL Submitted (24-JUL-2008) Rotavirus Department, National Institute of Virology, 20-A, Dr. Ambedkar Road, Pune, Maharashtra 411001, India REFERENCE 4 (bases 1 to 7559) AUTHORS Chhabra,P., Dhongade,R.K., Kalrao,V.R., Bavdekar,A.R. and Chitambar,S.D. TITLE Direct Submission JOURNAL Submitted (03-AUG-2010) Rotavirus Department, National Institute of Virology, 20-A, Dr. Ambedkar Road, Pune, Maharashtra 411001, India REMARK Sequence update by submitter COMMENT On Aug 3, 2010 this sequence version replaced EU921388.1. FEATURES Location/Qualifiers source 1..7559 /organism="Norovirus Hu/Pune/PC51/2007/India" /mol_type="genomic RNA" /strain="PC51" /host="Homo sapiens" /db_xref="taxon:585802" /country="India" CDS 5..5104 /note="ORF1; contains NTPase, 3A-like protein, VPg, protease, and RdRp" /codon_start=1 /product="nonstructural polyprotein" /protein_id="ADK94751.1" /translation="MKMASNDASAAAVANSNNDIAKSSSDGVLSNMAVTFKRALGARP KQPPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVKQPE ETNTAFSVPPLNQRENRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAIS LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK LKPLNILNILATCDWTFAGIVESLILMAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILNLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLAREL AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEYELQGPTLTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLRDVKTM PDLKQALKNVSIKKCQIVYGGSTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRITKRMNIQNLWSKPQVEDTEEAASKDGC SRPKDDEEFVVSSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRNFQPTRKQRKEERASLGLV TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGTKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWTYAQACASLDKTTSSGHPYHMRKNDCW NGETFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGTIKKRLLWGSDL STMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCT SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5085..6707 /note="structural protein; ORF2; VP1" /codon_start=1 /product="capsid protein" /protein_id="ACL31360.2" /translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLERLYTGPSSAFVVQPQNGRCTTDGVLLGTT QLSAVNICTFRGDVTHIAGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTRSDGSTRGHKATVLTGSADFAPKLGRVQFATDTDNDFESGQNTKFTPVGVIQDG STTHRNEPQQWVLPNYSGRTGHNVHLAPAVAPTYPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV" CDS 6707..7513 /note="ORF3" /codon_start=1 /product="VP2" /protein_id="ADK94750.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALSGRINPRTPTPARGSSSTSS NASTATSVYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgccaaca gcaacaacga 61 catcgcaaaa tcttcaagtg acggtgtgct atctaacatg gctgtcactt ttaaacgagc 121 cctcggggcg cggcctaaac agccgccccc gaaggaaata ccacccagac ccccacgacc 181 acccacacca gaattggtca aaaagatccc tcctccccca cccaacgggg aggatgaact 241 agtggtttcc tacagcgcca aagatggcgt ttccggcctg cctgagctca ccactgtcaa 301 acaaccggaa gaaaccaaca cggcgttcag tgttccccca ctcaaccaga gggagaatag 361 ggacgccaag gaaccactaa ctggaacaat tattgaaatg tgggatggag aaatatacca 421 ctacggcctg tatgtggaac gaggtcttat acttggtgtg cacaagccac cggcagccat 481 cagccttgcc aaggtcgagc taacaccact ctctttgttc tggagacctg tatacacccc 541 ccagtatctc atctctccag acactcttag gagactgcat ggagagtcat tcccctacac 601 tgcatttgac aacaattgct acgccttctg ttgttgggta ttagacctaa acgactcatg 661 gctaagcagg agaatgattc agagaacaac aggtttcttc aggccatacc aggattggaa 721 caggaaaccc cttcccacta tggatgattc caaattaaag aaggtggcta acatattctt 781 gtgcactttg tcttcactat tcaccagacc cattaaggac ataataggga agttgaaacc 841 tcttaacatt ctcaacattc tggctacgtg cgattggacc ttcgcaggca tagtggagtc 901 cttgatactc atggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gatcgcccct ttactaggtg attacgagct gcaaggacct gaggaccttg cagtagaact 1021 agtcccaata gtgatggggg gaataggttt ggtgctagga tttaccaaag agaaaattgg 1081 aaagatgttg tcatctgctg catccacttt gagagcctgt aaagaccttg gtgcatacgg 1141 actggaaatt ttgaatttgg tcatgaaatg gttctttcct aagaaagagg aagcaaacga 1201 attggctatg gtgagatcca tcgaggatgc ggtgctggac ctcgaggcaa ttgaaaacaa 1261 ccacatgacc accctgctca aagacaaaga cagcttggca acctacatga gaacccttga 1321 ccttgaggag gagaaagcca gaaaactctc aaccaaatct gcttcacccg acattgtggg 1381 cacaatcaac tctcttctgg caagaatcgc tgctgcacgc tccctagtgc atcgggcgaa 1441 agaagagctc tccagcaggc cgagacctgt tgttgtgatg atatcgggaa aaccagggat 1501 agggaaaact caccttgcca gggagctggc caagagaatc gcagcctccc tcacagggga 1561 ccagcgcgtg ggtctcatcc cgcgcaatgg tgtcgaccat tgggacgcgt acaagggaga 1621 aagggttgtc ctgtgggacg actatggaat gagtaacccc atccatgatg ccctcaggtt 1681 gcaggaactt gctgacactt gccccctcac gctaaattgt gacaggattg agaacaaagg 1741 gaaagtcttt gacagtgatg ccataattat caccaccaat ctggccaacc cagcaccact 1801 ggattatgtc aactttgaag cgtgctcgag gcgcattgac ttcctcgtgt acgcagaagc 1861 tcctgaggtg gaaaaagcaa agcgcgactt cccaggccaa cctgacatgt ggaagaacgc 1921 tttcagtcct gacttctcgc acataaaact gtcattggct ccacagggtg gttttgataa 1981 gaacggcaac accccacatg gaaaaggcgt catgaagacc ctcactactg gttccctcat 2041 cgcccgagca tcagggttac tccatgagag gctagatgaa tatgaattgc aaggcccaac 2101 tctcaccact ttcaactttg accgcaacaa gatccttgct ttcagacagc ttgctgctga 2161 aaacaagtat gggctcatgg acacaatgag agttggaaaa cagctcaggg atgtcaagac 2221 catgccagac ctcaaacaag cactcaagaa tgtctcgatc aaaaagtgcc agatagtgta 2281 cggtggtagc acctacacac ttgaggccga tggcaagggc agtgtgaaag ttgacaaagt 2341 gcaaagtgcc actgtgcaaa ccaacaacga actagccggt gccctacacc acctaaggtg 2401 cgccagaatt agatactatg tcaagtgtgt ccaggaggca ctgtactcca tcatccaaat 2461 tgctggggct gcatttgtca ccacgcgcat tactaagcgc atgaacatac agaacctctg 2521 gtccaagcca caggtggagg acacagaaga ggcggccagc aaagatggtt gctcaagacc 2581 caaagatgat gaagagtttg tcgtttcatc cgacgacatc aaaactgagg gcaagaaagg 2641 gaaaaacaag actggccgtg gtaagaagca cacagccttc tcaagcaaag ggctcagtga 2701 tgaggagtac gatgagtaca agagaatcag agaagagagg aatggcaagt actccataga 2761 agagtacctt caggacagag acaagtacta tgaggaggtg gccattgcca gggcaaccga 2821 agaggacttc tgtgaagaag aagaggccaa aatccggcag aggaattttc aaccaacaag 2881 gaaacaacgc aaagaagaga gggcctctct cggcttggtc acaggctctg aaatcaggaa 2941 gagaaaccca gaagacttca aacccaaggg aaaactgtgg gccgacgatg acagaagtgt 3001 tgactacaat gagaaactca actttgaggc cccaccaagc atctggtcgc ggatagtcaa 3061 ctttggttca ggttggggct tctgggtctc ccccagtctg tttataacat caacccatgt 3121 cataccccaa ggtacaaaag agttcttcgg agtccccatc aaacaaatcc agatacacaa 3181 atcaggtgaa ttctgccggt taaggttccc aaaaccaatc agaactgatg tgacgggcat 3241 gattctagaa gaaggtgcgc ccgaaggaac cgtggccaca ctactcatca agagaccaac 3301 tggggaactc atgcctctgg cagctagaat gggaacccat gcaaccatga agattcaagg 3361 gcgcacagtt ggaggacaaa tgggcatgct cctgacagga tccaacgcca agagtatgga 3421 cctaggcaca acaccgggtg actgcggctg tccctacatc tacaagaggg ggaatgacta 3481 cgtggtcata ggagtccata cggccgctgc ccgtggagga aacactgtca tatgtgccac 3541 ccaggggagt gaaggggaag ccacacttga aggtggtgac aataaaggaa catactgtgg 3601 tgcaccaatc ttgggcccag ggagtgcccc aaaactcagt actaagacta agttttggag 3661 atcatccaca acaccactcc cacctggcac ctatgaacca gcctatctcg gtggcaagga 3721 ccccagagtc aaaggtggcc cctcactgca acaggttatg agggaccaac taaaaccatt 3781 cactgagccc agaggcaaac cacccaaacc aagtgtgcta gaagccgcca agaagactat 3841 aatcaatgtg cttgaacaaa caatagaccc acctcaaaaa tggacatacg cacaggcgtg 3901 tgcatcacta gacaagacca cttccagcgg ccacccttac cacatgcgga agaacgattg 3961 ctggaatggg gagactttca caggaaaact ggcagaccag gcatcaaaag ctaacctaat 4021 gtttgaggaa ggaaagaaca tgaccccagt atacacagga gctctgaaag atgagctagt 4081 caagactgat aagatctatg ggacaatcaa gaagagactc ctgtggggtt cagacctatc 4141 aaccatgata cggtgtgcac gagccttcgg tgggctaatg gacgaactca aggcccattg 4201 cgtcacacta ccagtcaggg ttggtatgaa catgaatgag gatggaccca taatatttga 4261 gaaacattcc agatacaaat accattatga tgcagattac tcccgttggg actcaacaca 4321 acaaagagct gtgctggctg cagccctgga aatcatggtt aaattctcac cagaaccaca 4381 cctggctcaa atagttgcag aagacctact ttcccctagt gtaatggatg tgggtgactt 4441 tcaaatatca ataagtgagg gactcccctc tggggtgcct tgcacctccc aatggaattc 4501 catcgcccat tggctcctca ctctttgtgc actctctgaa gtcacggacc tgtcccctga 4561 catcatccag gccaattccc ttttctcctt ctatggtgat gatgagattg tgagtacaga 4621 cataaagttg gatccagaga aactgacggc aaaactcaag gagtacgggc tgaaaccaac 4681 ccgccccgac aaaactgaag gaccccttgt tatctctgaa gatctggatg gcctgacatt 4741 cctgcggagg actgtgaccc gtgacccagc tggttggttt ggaaaattgg aacaaagctc 4801 aattctcagg caaatgtact ggaccagggg ccccaaccat gaagatccat ctgaaacaat 4861 gataccacac tcccaaagac ccatacaatt gatgtctctg ctgggcgagg ctgcactcca 4921 cggcccggca ttctatagta aaattagtaa gctagtcatt gcagagttga aggaaggtgg 4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc ccccagtttt gtgaatgaag atggcgtcga 5101 atgacgccaa cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggcttt ggagcccgtt gtaggtgccg ctattgcggc gcctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagtttacag 5281 tgtcccctag aaatgctcca ggtgagatac tatggagtgc gcccttgggc cctgatttga 5341 acccttacct ttctcatctg gccagaatgt ataatggtta tgcaggtggt tttgaagtgc 5401 aggtaatcct cgcggggaac gcgttcaccg ccggaaaaat catatttgca gcagttccac 5461 ctaactttcc aactgaaggc ttgagcccca gccaggttac tatgttcccc catataatag 5521 tagatgttag gcaattggaa cctgtgttga tccccttacc tgatgttagg aataacttct 5581 atcactacaa ccagtcaaat gaccctacca ttaaattgat agcaatgttg tacacaccac 5641 ttagggctaa taatgctggg gatgatgtct tcacagtctc ttgtcgagtc ctcacgagac 5701 cgtcccctga ttttgatttc atatttctgg taccaccaac agttgaatca agaaccaaac 5761 catttaccgt tccaatctta actgttgagg aaatgaccaa ttcaagattc cccattcctt 5821 tggaaaggtt gtacacgggt cccagcagtg cttttgttgt ccagccacaa aacggcaggt 5881 gcacgactga tggcgtgctc ttaggcacca cccagctgtc tgctgtcaac atctgcacct 5941 ttagagggga tgtcactcac attgcaggct ctcgcaatta tacaatgaat ttggcctctc 6001 aaaattggaa caactatgat ccaacagaag aaatcccagc ccccctgggc accccagatt 6061 tcgtgggaaa gatccaaggc atgctcaccc aaaccacaag aagtgatggc tcgacccgcg 6121 gccacaaggc cacagtgctc actgggagtg ccgacttcgc cccaaaattg ggcagagtcc 6181 aattcgccac tgacacagac aacgatttcg aatctggcca aaacacgaaa ttcaccccag 6241 ttggcgtcat ccaggatggt tccactaccc accgaaatga acctcaacaa tgggtactcc 6301 caaattactc aggtagaact ggtcataatg tgcatctagc ccctgctgtt gcccccactt 6361 acccgggtga gcaactcctt ttcttcaggt ccactatgcc cggatgtagc gggtacccca 6421 acatggatct agattgcttg ctcccccagg agtgggtgca gcacttctac caagaagcag 6481 ctccagcaca atctgatgtg gctctgctaa gatttgtgaa tccagacaca ggtagggttc 6541 tctttgagtg caagctccat aaatcaggat atgtcacagt ggctcacact ggtcagcatg 6601 atttggttat tccccccaat ggttatttta gatttgattc ctgggttaat caattctaca 6661 cacttgcccc catgggaaat ggaacggggc gtagacgtgc tgtataatgg ctggagcttt 6721 ctttgctgga ttggcatctg atgtccttgg ctctggactt ggttccctaa tcaatgctgg 6781 ggctggggct atcaaccaaa agattgattt tgaaaataac agaaaattgc agcaagcttc 6841 cttccagttt agcagtaatc tacaacaggc ttcctttcaa catgataaag agatgctcca 6901 agcacaaatt gaggccacta aaaagttgca acaggaaatg atgaaagtca aacaggcaat 6961 gctcttagaa ggtggattct ctgaaacaga tgcagcccgt ggggcaatca acgcccccat 7021 gacaaaggct ttggactgga gcggaacaag gtactgggcc cctgatgcta ggactacaac 7081 atacaatgca ggccgctttt ccacccctca accttcgggg gcattgtcag gaagaatcaa 7141 tcccaggact cccacccccg ctcggggctc ctctagcaca tcttctaatg cttctactgc 7201 tacttctgta tattcaaatc aaactgtttc aacgagactt ggttctacag ctggttctgg 7261 caccaatgtc tcgagtctcc cgtcaactgc aaggactagg agttgggttg aggatcaaaa 7321 cagaaatctg tcacctttca tgaggggggc tcacaacata tcgtttgtca ccccaccatc 7381 tagcagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg 7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgta ggcgagggga 7501 gtcacgggtg taatgtgaaa agacaaaatt gattatcttc cctttcttta gtgtctttt //