Typing tool
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Complete norovirus genomes
EU921344 | GII.4 Hunter | ||
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GII.P4 Hunter |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7513LOCUS EU921344 7559 bp ss-RNA linear VRL 12-JUN-2015 DEFINITION Norovirus Hu/Pune/PC15/2006/India strain PC15 nonstructural polyprotein, capsid protein, and VP2 genes, complete cds. ACCESSION EU921344 VERSION EU921344.2 KEYWORDS . SOURCE Norovirus Hu/Pune/PC15/2006/India ORGANISM Norovirus Hu/Pune/PC15/2006/India Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7559) AUTHORS Chhabra,P., Dhongade,R.K., Kalrao,V.R., Bavdekar,A.R. and Chitambar,S.D. TITLE Epidemiological, clinical, and molecular features of norovirus infections in western India JOURNAL J. Med. Virol. 81 (5), 922-932 (2009) PUBMED 19319938 REFERENCE 2 (bases 1 to 7559) AUTHORS Chhabra,P., Walimbe,A.M. and Chitambar,S.D. TITLE Complete genome characterization of Genogroup II norovirus strains from India: Evidence of recombination in ORF2/3 overlap JOURNAL Infect. Genet. Evol. 10 (7), 1101-1109 (2010) PUBMED 20633703 REFERENCE 3 (bases 1 to 7559) AUTHORS Chhabra,P., Dhongade,R.K., Kalrao,V.R., Bavdekar,A.R. and Chitambar,S.D. TITLE Direct Submission JOURNAL Submitted (24-JUL-2008) Rotavirus Department, National Institute of Virology, 20-A, Dr. Ambedkar Road, Pune, Maharashtra 411001, India REFERENCE 4 (bases 1 to 7559) AUTHORS Chhabra,P., Dhongade,R.K., Kalrao,V.R., Bavdekar,A.R. and Chitambar,S.D. TITLE Direct Submission JOURNAL Submitted (03-AUG-2010) Rotavirus Department, National Institute of Virology, 20-A, Dr. Ambedkar Road, Pune, Maharashtra 411001, India REMARK Sequence update by submitter COMMENT On Aug 3, 2010 this sequence version replaced EU921344.1. FEATURES Location/Qualifiers source 1..7559 /organism="Norovirus Hu/Pune/PC15/2006/India" /mol_type="genomic RNA" /strain="PC15" /host="Homo sapiens" /db_xref="taxon:585766" /country="India" CDS 5..5104 /note="ORF1; contains NTPase, 3A-like protein, VPg, protease, and RdRp" /codon_start=1 /product="nonstructural polyprotein" /protein_id="ADK94749.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELVKNVPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LARVELTPLSLFWRPVYTPQYLISPDALKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK LRPLNILNILASCDWTFAGIVESLILLADLFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLAMKWFFP KKEEANELAIVRSIEDAVLDLEGIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTM PELKQALKNISIKKCQIVHNGCTYTLESDGKGNVKVDRVQSASVQTNNELTGALHHLR CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKGGC PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKTGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKQTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKTHCVTLPIRVGMNMNEDGPVIFEKHSRYTYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5085..6707 /note="structural protein; ORF2; VP1" /codon_start=1 /product="capsid protein" /protein_id="ACL31316.2" /translation="MKMASSDATPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGMP TQTTRGDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDG STTHQNEPQQWVLPNYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD CLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" CDS 6707..7513 /note="ORF3" /codon_start=1 /product="VP2" /protein_id="ADK94748.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAVN APMTKSLDWSGTRYWAPDARTTTYNAGRFSTPQPSGASPGRTNLRATVPARGSSSTPS NASTATSVYSNQTASTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSNQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga 61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc 121 cctcggggcg cggcctaagc agcctccccc gagggaaata ccacaaagac ccccacgacc 181 acctactcca gaactggtca aaaatgtccc ccctcccccg cccaacggag aggatgaaat 241 agtagtttct tatagtgtca aagatggtgt ctccggtttg cctgatcttt ccaccgtcag 301 gcaaccggaa gaatctaaca cggcattcag tgtccctcca ctcaatcaga gggagaatag 361 ggatgctaag gagccactga ctggaacaat tctggaaatg tgggatggag aaatctacca 421 ttatggcctg tatgtggagc gaggtcttgt actaggtgtg cacaaaccac cagctgccat 481 tagtctcgct agggtcgaac taacaccact ctccttgttc tggaggcctg tgtatactcc 541 tcagtacctc atctctccag acgctctcaa gaaattacac ggagagacat tcccctacac 601 agcctttgac aacaattgct atgccttttg ttgctgggtc ctggacctaa acgactcgtg 661 gctgagtagg agaatgatcc agagaacaac tggcttcttc aggccctacc aagattggaa 721 taggaaaccc ctccccacta tggatgattc caagttaaag aaagtagcta acatattcct 781 gtgtgctctg tcttcgctat tcactaggcc cataaaagat ataataggga agctaaggcc 841 tcttaacatc ctcaacatct tggcctcatg tgattggact ttcgcaggca tagtggagtc 901 cttgatactc ttggcagatc tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttactcggtg attacgagct acaaggacct gaggaccttg cagtggagct 1021 cgtccctgta gtgatggggg gaattggttt ggtgctagga ttcaccaaag agaagattgg 1081 aaaaatgttg tcatctgctg catccacctt gagagcttgt aaagatcttg gtgcatatgg 1141 gctagagatc ctaaagttgg ccatgaagtg gttcttcccg aagaaagagg aagcaaatga 1201 actggctata gtgagatcca tcgaggatgc agtcctggat ctcgagggaa ttgaaaacaa 1261 ccatatgacc accttgctta aagacaaaga cagtctggca acctacatga gaacccttga 1321 ccttgaggag gagaaagcca gaaaactctc aaccaagtct gcttcacctg acatcgtggg 1381 cacaatcaac gcccttctgg cgagaatcgc tgctgcacgc tctctggtgc atcgagcgaa 1441 ggaggaactt tccagcagac caagacctgt agtgttgatg atatcaggca gaccaggaat 1501 agggaagacc caccttgcta gggaagtggc taagagaatc gcagcctccc ttacaggaga 1561 ccagcgtgta ggcctcgtcc cacgcaatgg cgtcgaccat tgggatgcgt acaaggggga 1621 gagggtcgtc ctatgggacg actatggaat gagcaacccc atccacgatg ccctcaggtt 1681 gcaagaactc gctgacactt gccccctcac cctaaactgt gacaggattg agaataaagg 1741 aaaggttttt gacagcgatg tcatcattat caccactaat ctggctaacc cagcaccact 1801 ggactatgtc aactttgaag catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc 1861 ccctgaggtc gaaaaggcga agcgcgactt cccaggccaa cccgacatgt ggaagaacgc 1921 cttcagttct gacttctcac acataaaact aacattggct ccacagggtg gcttcgacaa 1981 gaacgggaac actccacacg gaaagggcgt catgaagact ctcaccactg gctccctcat 2041 tgcccgggca tcagggctac tccatgagag gctagatgaa tttgaattac agggcccaac 2101 tctcaccacc ttcaactttg atcgcaataa agtgctcgcc tttagacaac ttgctgctga 2161 aaacaaatat gggttgatgg acacaatgag agttgggagg cagctcaagg atgtcagaac 2221 aatgccagaa cttaaacaag cactcaagaa tatctcaatc aagaagtgcc agatagtgca 2281 taatggttgc acctacacac ttgagtctga tggcaagggc aatgtgaaag ttgacagagt 2341 tcaaagcgcc tccgtgcaaa ccaacaatga gctgactggc gccctgcacc atctaaggtg 2401 cgccagaata agatactatg ttaggtgtgt ccaggaggcc ctgtattcca tcatccagat 2461 tgctggggct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aagacctatg 2521 gtccaagcca caagtggaaa acacagagga gactaccagc aagggcgggt gtccaaaacc 2581 caaagatgat gaggagttcg tcatttcatc cgacgacatc aaaactgagg gtaagaaagg 2641 gaagaacaag actggccgcg gcaagaagca cacagccttc tcaagcaaag gtctcagtga 2701 tgaagagtac gatgagtaca agaggattag agaagaaagg aatggcaagt actccataga 2761 agagtacctt caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgaccga 2821 ggaggacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttta ggccaacaag 2881 gaaacaacgc aaggaggaaa gagcttctct cggtttagtt acaggttctg aaattaggaa 2941 aagaaatcca gatgatttta aacccaaggg gaagctgtgg gctgacgatg acagaagtgt 3001 ggactacaat gagaaactca gttttgaagc cccaccaagc atctggtcga ggatagtcaa 3061 ctttggttca ggttggggat tctgggtctc ccccagtctg ttcataacat caacccatgt 3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aaacaaattc aggtacataa 3181 gacaggcgaa ttctgtcgct tgagattccc aaaaccaatc aggactgatg tgacgggcat 3241 gatcttagaa gaaggtgcac ccgagggcac cgtggtcaca ctactcatca aaaggtccac 3301 tggtgaactc atgcccctag cagctaggat ggggacccac gcaaccatga aaatccaagg 3361 acgcactgtt gggggtcaaa tgggcatgct tctgacagga tccaacgcca agagcatgga 3421 cctgggtacc acaccaggtg attgtggctg tccctacatc tacaagagag gaaatgacta 3481 tgtggtcatt ggagtccaca cggctgccgc tcgtggggga aacactgtca tatgtgctac 3541 ccaggggagt gagggagagg ctacacttga aggtggtgat aataaaggga catactgtgg 3601 tgcaccaatc ctaggtccag ggagtgctcc aaaacttagc accaagacca aattctggag 3661 atcgtccaca gcaccactcc cacctggcac ctatgaacca gcctaccttg gtggcaagga 3721 ccccagagtc aagggtggcc cctcactgca gcaagttatg agggatcagt tgaagccatt 3781 tacagagccc aggggcaagc caccaaagcc aagtgtgttg gaagctgcca agcaaaccat 3841 tatcaatgtc cttgagcaaa caattgatcc acctgagaaa tggtcattcg cacaagcttg 3901 cgcgtccctt gacaagacca cttccagtgg ccatccgcat cacatgcgga aaaacgactg 3961 ctggaatggg gagtccttca caggcaagct agcagaccag gcttccaagg ccaacctgat 4021 gtttgaagaa gggaagaaca tgaccccagt ctacacagct gcgcttaagg atgaattagt 4081 taaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggatttggc 4141 gaccatgatc cggtgtgctc gagcattcgg aggcctaatg gatgaactca aaacacactg 4201 tgtcacactt cccattagag ttggtatgaa tatgaatgag gatggccccg tcatcttcga 4261 gaagcattcc aggtacacat accactatga tgctgattac tctcgatggg attcaacaca 4321 acagagagcc gtgttagcag cagctctaga aatcatggtt aaattctccc cagaaccaca 4381 tttggctcag gtagtcgcag aagaccttct ctctcctagc gtggtggacg tgggtgactt 4441 cacaatatca atcaacgagg gtcttccctc tggggtgccc tgcacctccc aatggaactc 4501 catcgcccac tggcttctca ctctctgtgc gctctctgaa gttacaaact tgtctcctga 4561 caccatacag gctaattccc tcttctcctt ttatggtgat gatgaaattg ttagcacaga 4621 cataaaattg gacccagaga agttgacagc aaagctcagg gaatatgggt taaaaccaac 4681 ccgccctgac aaaactgaag gaccccttgt catctctgaa gacttgaatg gcctgacttt 4741 cctgcggagg actgtgaccc gcgacccagc tggttggttt ggaaaattgg agcagagttc 4801 aatactcagg caaatgtact ggactagggg ttccaaccat gaagacccat ctgaaacaat 4861 gattccacac tcccaaaggc ccatacaatt gatgtcccta ctgggggagg ccgcactcca 4921 cggcccagca ttctacagca aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg 4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 gtgacgccac cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggcttt ggagcccgtt gttggtgccg cgattgcagc acctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagtttacag 5281 tatcccctag aaacgctcca ggtgaaatat tatggagcgc gcccttgggc cctgatttga 5341 atccctacct ttcccatttg gccagaatgt acaatggata tgcaggtggt tttgaagtgc 5401 aggtgatcct cgcggggaac gcgttcaccg ccgggaaaat catatttgca gcagtcccac 5461 caaatttccc aactgaaggc ttgagcccca gccaggtcac tatgttcccc catataatag 5521 tagatgttag gcaactggaa cctgtgttga tccccttacc tgatgttagg aacaatttct 5581 atcattacaa tcaatcaaat gaccccacca tcaaattgat agcaatgctg tatacaccac 5641 ttagggctaa caatgctggg gacgatgtct tcacagtctc ttgccgagtt ctcacgagac 5701 catcccccga ttttgatttc atatttttgg tgccacccac agttgaatca agaactaaac 5761 cattctctgt cccaatctta actgttgagg agatgaccaa ttcaagattc cctattcctt 5821 tggaaaagtt gttcacgggt cccagcagtg cctttgttgt tcaaccacaa aatggcagat 5881 gcacgactga tggcgtgctc ttaggtacta cccaactgtc tcctgtcaac atctgcacct 5941 tcagagggga tgtcacccac attgcaggca ctcaaaatta cacaatgaat ctggcctccc 6001 aaaattggaa caactacgac ccaacagaag aaatcccagc ccctctggga accccagatt 6061 ttgtaggaaa gatccaaggc atgcccaccc aaactacaag gggggatggc tcgacccgcg 6121 gtcataaagc cacagtgagc actggaagtg tccacttcac cccaaagctg ggcagtgttc 6181 aattttccac tgacacaagc aatgactttg aaactggcca aaacacgaga ttcaccccag 6241 tcggtgtcgt ccaggatggt agtaccaccc accaaaatga accccaacaa tgggtgctcc 6301 caaactattc aggtagagac agtcacaatg tacatctagc ccctgccgtg gcccccactt 6361 ttccgggtga gcaacttctt ttctttaggt ccactatgcc cggatgcagc gggtatccca 6421 acatgaattt ggattgccta ctccctcagg agtgggtgca gcacttctac caagagtcag 6481 ctccagcaca atctgatgtg gcactgctga gatttgtgaa tccagacaca ggtagggttt 6541 tgtttgagtg caagcttcat aaatcaggct atgtaacagt ggctcacact ggccaacatg 6601 atttggttat cccccccaat ggctatttta gatttgattc ctgggtcaac caattctaca 6661 cacttgcccc catgggaaat ggagcggggc gtagacgtgc attataatgg ctggagcttt 6721 ctttgctgga ttggcatctg atgtccttgg ctctgggctt ggctctttaa tcaatgctgg 6781 ggctggggcc atcaaccaaa aagttgagtt tgaaaataac agaaaattgc aacaagcctc 6841 tttccaattt agcagcaacc tacaacaggc ttcctttcaa catgataaag agatgctcca 6901 agcacaaatt gaggccacca aaaagttgca acaggaaatg atgagagtta aacaggcaat 6961 gctcctagag ggtgggttct ctgagacaga tgcagcccgt ggggcagtca acgcccccat 7021 gacaaagtct ttggactgga gcggaacaag gtactgggct cccgatgcta ggactacaac 7081 atacaatgca ggccgctttt ccacccctca accctcgggg gcatcgccag gaagaactaa 7141 tctcagggct actgtccccg ctcggggctc ctccagcaca ccttctaatg cttccactgc 7201 tacttctgtg tactcaaatc aaactgcttc aacgagactt ggttctacag ctggttctgg 7261 taccagtgtc tcgagcctcc cgtcaactgc aaggactagg agctgggttg aggatcaaaa 7321 caggaatttg tcacctttca tgaggggggc ccacaacata tcgtttgtca ccccaccatc 7381 tagtagatcc tctaaccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg 7441 gactggcgca ttcaacacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga 7501 gtcacgggtg taatgtgaaa agacaaaatt gattctttcc ttttctttag tgtcttttt //