Typing tool
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Typing tool
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Complete norovirus genomes
| EU921344 | GII.4 Hunter | |
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| GII.P4 Apeldoorn |
ORF1: 5..5104
ORF2: 5085..6707
ORF3: 6707..7513
LOCUS EU921344 7559 bp ss-RNA linear VRL 12-JUN-2015
DEFINITION Norovirus Hu/Pune/PC15/2006/India strain PC15 nonstructural
polyprotein, capsid protein, and VP2 genes, complete cds.
ACCESSION EU921344
VERSION EU921344.2
KEYWORDS .
SOURCE Norovirus Hu/Pune/PC15/2006/India
ORGANISM Norovirus Hu/Pune/PC15/2006/India
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7559)
AUTHORS Chhabra,P., Dhongade,R.K., Kalrao,V.R., Bavdekar,A.R. and
Chitambar,S.D.
TITLE Epidemiological, clinical, and molecular features of norovirus
infections in western India
JOURNAL J. Med. Virol. 81 (5), 922-932 (2009)
PUBMED 19319938
REFERENCE 2 (bases 1 to 7559)
AUTHORS Chhabra,P., Walimbe,A.M. and Chitambar,S.D.
TITLE Complete genome characterization of Genogroup II norovirus strains
from India: Evidence of recombination in ORF2/3 overlap
JOURNAL Infect. Genet. Evol. 10 (7), 1101-1109 (2010)
PUBMED 20633703
REFERENCE 3 (bases 1 to 7559)
AUTHORS Chhabra,P., Dhongade,R.K., Kalrao,V.R., Bavdekar,A.R. and
Chitambar,S.D.
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2008) Rotavirus Department, National Institute of
Virology, 20-A, Dr. Ambedkar Road, Pune, Maharashtra 411001, India
REFERENCE 4 (bases 1 to 7559)
AUTHORS Chhabra,P., Dhongade,R.K., Kalrao,V.R., Bavdekar,A.R. and
Chitambar,S.D.
TITLE Direct Submission
JOURNAL Submitted (03-AUG-2010) Rotavirus Department, National Institute of
Virology, 20-A, Dr. Ambedkar Road, Pune, Maharashtra 411001, India
REMARK Sequence update by submitter
COMMENT On Aug 3, 2010 this sequence version replaced EU921344.1.
FEATURES Location/Qualifiers
source 1..7559
/organism="Norovirus Hu/Pune/PC15/2006/India"
/mol_type="genomic RNA"
/strain="PC15"
/host="Homo sapiens"
/db_xref="taxon:585766"
/geo_loc_name="India"
CDS 5..5104
/note="ORF1; contains NTPase, 3A-like protein, VPg,
protease, and RdRp"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ADK94749.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKNVPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE
ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LARVELTPLSLFWRPVYTPQYLISPDALKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLADLFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLAMKWFFP
KKEEANELAIVRSIEDAVLDLEGIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTM
PELKQALKNISIKKCQIVHNGCTYTLESDGKGNVKVDRVQSASVQTNNELTGALHHLR
CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKGGC
PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKTGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKQTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKTHCVTLPIRVGMNMNEDGPVIFEKHSRYTYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6707
/note="structural protein; ORF2; VP1"
/codon_start=1
/product="capsid protein"
/protein_id="ACL31316.2"
/translation="MKMASSDATPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGMP
TQTTRGDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDG
STTHQNEPQQWVLPNYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
CDS 6707..7513
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="ADK94748.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAVN
APMTKSLDWSGTRYWAPDARTTTYNAGRFSTPQPSGASPGRTNLRATVPARGSSSTPS
NASTATSVYSNQTASTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSNQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcctaagc agcctccccc gagggaaata ccacaaagac ccccacgacc
181 acctactcca gaactggtca aaaatgtccc ccctcccccg cccaacggag aggatgaaat
241 agtagtttct tatagtgtca aagatggtgt ctccggtttg cctgatcttt ccaccgtcag
301 gcaaccggaa gaatctaaca cggcattcag tgtccctcca ctcaatcaga gggagaatag
361 ggatgctaag gagccactga ctggaacaat tctggaaatg tgggatggag aaatctacca
421 ttatggcctg tatgtggagc gaggtcttgt actaggtgtg cacaaaccac cagctgccat
481 tagtctcgct agggtcgaac taacaccact ctccttgttc tggaggcctg tgtatactcc
541 tcagtacctc atctctccag acgctctcaa gaaattacac ggagagacat tcccctacac
601 agcctttgac aacaattgct atgccttttg ttgctgggtc ctggacctaa acgactcgtg
661 gctgagtagg agaatgatcc agagaacaac tggcttcttc aggccctacc aagattggaa
721 taggaaaccc ctccccacta tggatgattc caagttaaag aaagtagcta acatattcct
781 gtgtgctctg tcttcgctat tcactaggcc cataaaagat ataataggga agctaaggcc
841 tcttaacatc ctcaacatct tggcctcatg tgattggact ttcgcaggca tagtggagtc
901 cttgatactc ttggcagatc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gattgccccc ttactcggtg attacgagct acaaggacct gaggaccttg cagtggagct
1021 cgtccctgta gtgatggggg gaattggttt ggtgctagga ttcaccaaag agaagattgg
1081 aaaaatgttg tcatctgctg catccacctt gagagcttgt aaagatcttg gtgcatatgg
1141 gctagagatc ctaaagttgg ccatgaagtg gttcttcccg aagaaagagg aagcaaatga
1201 actggctata gtgagatcca tcgaggatgc agtcctggat ctcgagggaa ttgaaaacaa
1261 ccatatgacc accttgctta aagacaaaga cagtctggca acctacatga gaacccttga
1321 ccttgaggag gagaaagcca gaaaactctc aaccaagtct gcttcacctg acatcgtggg
1381 cacaatcaac gcccttctgg cgagaatcgc tgctgcacgc tctctggtgc atcgagcgaa
1441 ggaggaactt tccagcagac caagacctgt agtgttgatg atatcaggca gaccaggaat
1501 agggaagacc caccttgcta gggaagtggc taagagaatc gcagcctccc ttacaggaga
1561 ccagcgtgta ggcctcgtcc cacgcaatgg cgtcgaccat tgggatgcgt acaaggggga
1621 gagggtcgtc ctatgggacg actatggaat gagcaacccc atccacgatg ccctcaggtt
1681 gcaagaactc gctgacactt gccccctcac cctaaactgt gacaggattg agaataaagg
1741 aaaggttttt gacagcgatg tcatcattat caccactaat ctggctaacc cagcaccact
1801 ggactatgtc aactttgaag catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc
1861 ccctgaggtc gaaaaggcga agcgcgactt cccaggccaa cccgacatgt ggaagaacgc
1921 cttcagttct gacttctcac acataaaact aacattggct ccacagggtg gcttcgacaa
1981 gaacgggaac actccacacg gaaagggcgt catgaagact ctcaccactg gctccctcat
2041 tgcccgggca tcagggctac tccatgagag gctagatgaa tttgaattac agggcccaac
2101 tctcaccacc ttcaactttg atcgcaataa agtgctcgcc tttagacaac ttgctgctga
2161 aaacaaatat gggttgatgg acacaatgag agttgggagg cagctcaagg atgtcagaac
2221 aatgccagaa cttaaacaag cactcaagaa tatctcaatc aagaagtgcc agatagtgca
2281 taatggttgc acctacacac ttgagtctga tggcaagggc aatgtgaaag ttgacagagt
2341 tcaaagcgcc tccgtgcaaa ccaacaatga gctgactggc gccctgcacc atctaaggtg
2401 cgccagaata agatactatg ttaggtgtgt ccaggaggcc ctgtattcca tcatccagat
2461 tgctggggct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aagacctatg
2521 gtccaagcca caagtggaaa acacagagga gactaccagc aagggcgggt gtccaaaacc
2581 caaagatgat gaggagttcg tcatttcatc cgacgacatc aaaactgagg gtaagaaagg
2641 gaagaacaag actggccgcg gcaagaagca cacagccttc tcaagcaaag gtctcagtga
2701 tgaagagtac gatgagtaca agaggattag agaagaaagg aatggcaagt actccataga
2761 agagtacctt caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgaccga
2821 ggaggacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttta ggccaacaag
2881 gaaacaacgc aaggaggaaa gagcttctct cggtttagtt acaggttctg aaattaggaa
2941 aagaaatcca gatgatttta aacccaaggg gaagctgtgg gctgacgatg acagaagtgt
3001 ggactacaat gagaaactca gttttgaagc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggttca ggttggggat tctgggtctc ccccagtctg ttcataacat caacccatgt
3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aaacaaattc aggtacataa
3181 gacaggcgaa ttctgtcgct tgagattccc aaaaccaatc aggactgatg tgacgggcat
3241 gatcttagaa gaaggtgcac ccgagggcac cgtggtcaca ctactcatca aaaggtccac
3301 tggtgaactc atgcccctag cagctaggat ggggacccac gcaaccatga aaatccaagg
3361 acgcactgtt gggggtcaaa tgggcatgct tctgacagga tccaacgcca agagcatgga
3421 cctgggtacc acaccaggtg attgtggctg tccctacatc tacaagagag gaaatgacta
3481 tgtggtcatt ggagtccaca cggctgccgc tcgtggggga aacactgtca tatgtgctac
3541 ccaggggagt gagggagagg ctacacttga aggtggtgat aataaaggga catactgtgg
3601 tgcaccaatc ctaggtccag ggagtgctcc aaaacttagc accaagacca aattctggag
3661 atcgtccaca gcaccactcc cacctggcac ctatgaacca gcctaccttg gtggcaagga
3721 ccccagagtc aagggtggcc cctcactgca gcaagttatg agggatcagt tgaagccatt
3781 tacagagccc aggggcaagc caccaaagcc aagtgtgttg gaagctgcca agcaaaccat
3841 tatcaatgtc cttgagcaaa caattgatcc acctgagaaa tggtcattcg cacaagcttg
3901 cgcgtccctt gacaagacca cttccagtgg ccatccgcat cacatgcgga aaaacgactg
3961 ctggaatggg gagtccttca caggcaagct agcagaccag gcttccaagg ccaacctgat
4021 gtttgaagaa gggaagaaca tgaccccagt ctacacagct gcgcttaagg atgaattagt
4081 taaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggatttggc
4141 gaccatgatc cggtgtgctc gagcattcgg aggcctaatg gatgaactca aaacacactg
4201 tgtcacactt cccattagag ttggtatgaa tatgaatgag gatggccccg tcatcttcga
4261 gaagcattcc aggtacacat accactatga tgctgattac tctcgatggg attcaacaca
4321 acagagagcc gtgttagcag cagctctaga aatcatggtt aaattctccc cagaaccaca
4381 tttggctcag gtagtcgcag aagaccttct ctctcctagc gtggtggacg tgggtgactt
4441 cacaatatca atcaacgagg gtcttccctc tggggtgccc tgcacctccc aatggaactc
4501 catcgcccac tggcttctca ctctctgtgc gctctctgaa gttacaaact tgtctcctga
4561 caccatacag gctaattccc tcttctcctt ttatggtgat gatgaaattg ttagcacaga
4621 cataaaattg gacccagaga agttgacagc aaagctcagg gaatatgggt taaaaccaac
4681 ccgccctgac aaaactgaag gaccccttgt catctctgaa gacttgaatg gcctgacttt
4741 cctgcggagg actgtgaccc gcgacccagc tggttggttt ggaaaattgg agcagagttc
4801 aatactcagg caaatgtact ggactagggg ttccaaccat gaagacccat ctgaaacaat
4861 gattccacac tcccaaaggc ccatacaatt gatgtcccta ctgggggagg ccgcactcca
4921 cggcccagca ttctacagca aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg
4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 gtgacgccac cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggcttt ggagcccgtt gttggtgccg cgattgcagc acctgtagcg ggccaacaaa
5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagtttacag
5281 tatcccctag aaacgctcca ggtgaaatat tatggagcgc gcccttgggc cctgatttga
5341 atccctacct ttcccatttg gccagaatgt acaatggata tgcaggtggt tttgaagtgc
5401 aggtgatcct cgcggggaac gcgttcaccg ccgggaaaat catatttgca gcagtcccac
5461 caaatttccc aactgaaggc ttgagcccca gccaggtcac tatgttcccc catataatag
5521 tagatgttag gcaactggaa cctgtgttga tccccttacc tgatgttagg aacaatttct
5581 atcattacaa tcaatcaaat gaccccacca tcaaattgat agcaatgctg tatacaccac
5641 ttagggctaa caatgctggg gacgatgtct tcacagtctc ttgccgagtt ctcacgagac
5701 catcccccga ttttgatttc atatttttgg tgccacccac agttgaatca agaactaaac
5761 cattctctgt cccaatctta actgttgagg agatgaccaa ttcaagattc cctattcctt
5821 tggaaaagtt gttcacgggt cccagcagtg cctttgttgt tcaaccacaa aatggcagat
5881 gcacgactga tggcgtgctc ttaggtacta cccaactgtc tcctgtcaac atctgcacct
5941 tcagagggga tgtcacccac attgcaggca ctcaaaatta cacaatgaat ctggcctccc
6001 aaaattggaa caactacgac ccaacagaag aaatcccagc ccctctggga accccagatt
6061 ttgtaggaaa gatccaaggc atgcccaccc aaactacaag gggggatggc tcgacccgcg
6121 gtcataaagc cacagtgagc actggaagtg tccacttcac cccaaagctg ggcagtgttc
6181 aattttccac tgacacaagc aatgactttg aaactggcca aaacacgaga ttcaccccag
6241 tcggtgtcgt ccaggatggt agtaccaccc accaaaatga accccaacaa tgggtgctcc
6301 caaactattc aggtagagac agtcacaatg tacatctagc ccctgccgtg gcccccactt
6361 ttccgggtga gcaacttctt ttctttaggt ccactatgcc cggatgcagc gggtatccca
6421 acatgaattt ggattgccta ctccctcagg agtgggtgca gcacttctac caagagtcag
6481 ctccagcaca atctgatgtg gcactgctga gatttgtgaa tccagacaca ggtagggttt
6541 tgtttgagtg caagcttcat aaatcaggct atgtaacagt ggctcacact ggccaacatg
6601 atttggttat cccccccaat ggctatttta gatttgattc ctgggtcaac caattctaca
6661 cacttgcccc catgggaaat ggagcggggc gtagacgtgc attataatgg ctggagcttt
6721 ctttgctgga ttggcatctg atgtccttgg ctctgggctt ggctctttaa tcaatgctgg
6781 ggctggggcc atcaaccaaa aagttgagtt tgaaaataac agaaaattgc aacaagcctc
6841 tttccaattt agcagcaacc tacaacaggc ttcctttcaa catgataaag agatgctcca
6901 agcacaaatt gaggccacca aaaagttgca acaggaaatg atgagagtta aacaggcaat
6961 gctcctagag ggtgggttct ctgagacaga tgcagcccgt ggggcagtca acgcccccat
7021 gacaaagtct ttggactgga gcggaacaag gtactgggct cccgatgcta ggactacaac
7081 atacaatgca ggccgctttt ccacccctca accctcgggg gcatcgccag gaagaactaa
7141 tctcagggct actgtccccg ctcggggctc ctccagcaca ccttctaatg cttccactgc
7201 tacttctgtg tactcaaatc aaactgcttc aacgagactt ggttctacag ctggttctgg
7261 taccagtgtc tcgagcctcc cgtcaactgc aaggactagg agctgggttg aggatcaaaa
7321 caggaatttg tcacctttca tgaggggggc ccacaacata tcgtttgtca ccccaccatc
7381 tagtagatcc tctaaccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg
7441 gactggcgca ttcaacacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga
7501 gtcacgggtg taatgtgaaa agacaaaatt gattctttcc ttttctttag tgtcttttt
//