Typing tool
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Typing tool
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Complete norovirus genomes
| EU448333 | GII.18 | |
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| GII.P11 |
ORF1: 1..514
ORF2: 498..2168
ORF3: 2168..2992
LOCUS EU448333 3090 bp RNA linear VRL 26-JUL-2016
DEFINITION Norovirus pig/GII-18/F15-10nv/CAN RNA polymerase gene, partial cds;
and capsid protein and small basic protein genes, complete cds.
ACCESSION EU448333
VERSION EU448333.1
KEYWORDS .
SOURCE Norovirus pig/GII-18/F15-10nv/CAN
ORGANISM Norovirus pig/GII-18/F15-10nv/CAN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3090)
AUTHORS L'Homme,Y., Sansregret,R., Plante-Fortier,E., Lamontagne,A.M.,
Lacroix,G., Ouardani,M., Deschamps,J., Simard,G. and Simard,C.
TITLE Genetic diversity of porcine Norovirus and Sapovirus: Canada,
2005-2007
JOURNAL Arch. Virol. 154 (4), 581-593 (2009)
PUBMED 19283338
REFERENCE 2 (bases 1 to 3090)
AUTHORS L'Homme,Y., Sansregret,R. and Simard,C.
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2008) Food Virology Laboratory, Canadian Food
Inspection Agency (CFIA), 3400 Casavant O., St-Hyacinthe, Quebec
J2S 8E3, Canada
FEATURES Location/Qualifiers
source 1..3090
/organism="Norovirus pig/GII-18/F15-10nv/CAN"
/mol_type="genomic RNA"
/isolation_source="feces"
/host="pig"
/db_xref="taxon:520972"
/country="Canada"
CDS <1..514
/note="RdRp"
/codon_start=2
/product="RNA polymerase"
/protein_id="ACC69027.1"
/translation="LYGDDEIVSTDITLDPNKLTEKLKEYGLKPTRPDKTEGPLVIQK
NLSGLTFLRRTIVRDPAGWFGKLDKDSILRQLYWTRGPNHEDPMETMVPHSQRAIQLM
ALLGEASLHGSNFYGKVSRMVISEIKEGGLEFYVPRHEAMFRWMRFSDLSTWEGDRNL
APSGVNEDGV"
CDS 498..2168
/note="VP1"
/codon_start=1
/product="capsid protein"
/protein_id="ACC69028.1"
/translation="MKMASNDVAAPSTDGSAGLVPEVNNETMALEPVAGAALAAPVVG
QHNVIDPWIRGNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLARMYNGYAG
GMEVQVVLAGNAFAAGKIIFAAVPPSFPVDALSAPTITMCPHVIVDVRQLEPVLLPMP
DVRNNFFHYNQSSDPKLRLVAMLYTPLRANSPTDDVFTVSCRVLTRPSPDFEFTFLIP
PTVESKSKPLTIPQLTLSELSNSRFPAPIDMLNTSPNDNIVVQPQNGRCTLDGELQGT
TQLQPSLICSFRGVVLNETSRMAVDYEEEEEVQRPQARAFNHEYHLQLQNLDGTDYDP
AGDLPATLGAPDFVGTVYGVVSQRTTRDSAARAHEAKIITNDPRYAPKLGSVEFVTES
TDIVINDQTKFTPVGLAHNRAVDYKQWELPHYAGELTANTNLAPPVAPVYPGEQLLFF
RSNLPLAGGTAASVLDYLLPQEWIQHFYQESFTPQSDIALLRYVNPDTGRVLFEAKLH
RQGYITVAGAGTSPVAVPPNGYFRFESWVSQFYALAPMGSGTGRRRNQ"
CDS 2168..2992
/note="VP2"
/codon_start=1
/product="small basic protein"
/protein_id="ACC69029.1"
/translation="MAGQIIAGIAADLFSSGIGSLINAGANALNQKLSMIFKKLQSAS
FAHDRDMLQAQVAATRQLQQDMIKIKEDTLMLAGFSPSDAARGSVNAPMTKVLDWNGT
RYWAPGAMRTSSYSGRFSSQVPQTTFYKSPPSTPSGQTKPNPRPDPKPPATQRPQATP
APSGGSSGSGSVSSHSTQSTSLSSGHSSNSTLSRTASWVISQNLEPFMPGSLNISGVT
PPSDTLSSRSSVSSRSSFSGTVSTVPKEVLDSWTPAFNTRRQPLFAHLRRRGESQA"
ORIGIN
1 cctctatggt gatgatgaaa tcgtgagcac agatattact ttggacccca ataagctcac
61 agagaagtta aaggaatatg gcctgaaacc aactaggcca gataaaactg aaggaccctt
121 agtaatccaa aagaatctgt caggactaac tttcttgagg aggacgatag tccgtgaccc
181 agctgggtgg tttggtaaac ttgataaaga ttccatcttg cggcaactct actggaccag
241 gggaccgaac cacgaagacc ccatggaaac catggtgccc cactcacaaa gagcaataca
301 attgatggcc ctgcttgggg aggcctcatt gcatggttcc aatttctatg gtaaagtgag
361 caggatggtg ataagtgaga tcaaggaagg tggtctggag ttttacgtgc ccagacatga
421 agccatgttt cgctggatgc ggttttcaga cctcagcacg tgggagggcg atcgcaatct
481 ggctcccagt ggtgtgaatg aagatggcgt ctaacgatgt cgctgctcca tctacggatg
541 gatctgccgg tctcgtacca gaggtcaaca atgagaccat ggcactagag cccgtggcgg
601 gggcggcact tgccgcgcct gtcgtagggc aacataatgt tattgacccc tggattagag
661 gtaattttgt tcaagccccc aatggagaat ttactgtttc cccccgtaat tcccccgggg
721 aggtcctgct gaatttggaa ttaggtcctg agctaaatcc ctatttggcc catctcgctc
781 gcatgtacaa tgggtatgct ggcggaatgg aggttcaggt ggtgctcgct gggaatgcgt
841 tcgcagcggg aaagatcatc tttgctgccg tcccgccaag cttccctgtt gatgctttga
901 gcgcgcccac tataacgatg tgccctcacg ttatagtgga tgtgagacag ttagaaccag
961 tgttgcttcc catgccagat gttagaaata atttctttca ttacaatcag agttctgatc
1021 ccaagcttcg attagttgca atgctttata cacccctgag ggctaatagc ccaacagatg
1081 atgttttcac tgtttcctgt agagttctta ctaggccatc tcctgatttt gagttcactt
1141 tcctgatacc ccctacagtt gagtctaaaa gtaagcccct tactatccct cagctcactc
1201 tgtctgaact ttccaattcg agatttcctg ctcccattga catgctgaac acgagtccca
1261 atgataacat tgtggtgcag ccccaaaatg gaaggtgcac ccttgatggt gaattgcagg
1321 gcacaaccca gctccaaccg agcctcatct gctcctttcg gggagtggtg ctcaatgaaa
1381 cctcccggat ggcagttgat tacgaggagg aggaagaggt gcagcgccca caggcccgcg
1441 catttaacca tgaataccac cttcaattac aaaaccttga tggtactgat tatgaccctg
1501 caggggacct ccccgcgact ctgggagcgc ctgactttgt cgggacggtt tatggagtgg
1561 tcagccaacg caccactcgt gacagcgcag ccagagcgca tgaggccaag attatcacca
1621 atgaccctag atatgcccct aaacttggat cagttgagtt tgtgacagaa tctacagata
1681 ttgtgataaa tgatcagacc aaatttaccc ctgttggcct tgctcataat cgggcagttg
1741 attataaaca atgggagctg ccgcactatg cgggagagct cactgctaac accaacctgg
1801 ccccccctgt ggcacctgtt taccctggtg agcagttgct gttctttcgc tcaaatcttc
1861 ctctcgcggg cggcacggct gcaagtgttc ttgattatct tttgccccaa gaatggattc
1921 agcattttta tcaggagtcc tttactcccc agtctgatat tgcccttctg aggtatgtga
1981 accctgatac aggcagagtt ctttttgaag cgaagctaca ccggcaaggt tacataactg
2041 tagctggtgc aggcaccagc cccgtggccg ttcccccaaa cggctacttt aggtttgagt
2101 cttgggtttc acagttttac gcattggccc ccatgggatc tgggacgggg cgtagaagga
2161 atcagtaatg gcagggcaaa ttatagccgg gattgctgct gatttgttta gctctggaat
2221 tggatcactt attaatgctg gtgctaatgc ccttaatcaa aagttgagta tgatttttaa
2281 gaaattgcaa tctgcttctt ttgctcatga tagggatatg ctgcaggcgc aggtcgcagc
2341 tacaaggcaa ctgcagcaag atatgattaa aattaaggag gatacactta tgcttgccgg
2401 tttctcacca tcagatgcgg cgcgaggttc tgtgaacgcc ccaatgacta aagtcctgga
2461 ctggaatggc actaggtact gggccccagg tgcgatgcgc acttcatcct attctggacg
2521 gttttcctca caggtgcccc agaccacctt ttataagagt ccacccagca caccatctgg
2581 ccagacgaag cctaacccac gaccggatcc caaaccgcct gcgacacagc gaccgcaggc
2641 aactcctgcc ccttccgggg gtagctccgg ttctggatcg gtctcgtccc attcaaccca
2701 gtcaacctct ctttcttcgg ggcactcctc taactcgaca ttgtcacgaa ctgcaagttg
2761 ggttatttca cagaatcttg agccctttat gccgggttca ctgaacatca gtggtgtgac
2821 tccaccatct gacactcttt ctagcagatc ttcagtttct tctagatctt cattttcggg
2881 aacggtctca accgtcccca aagaggtttt ggactcctgg acacctgcat tcaacacacg
2941 caggcagccg ctatttgctc acctccgtag gaggggggag tcacaggcct aagtgaaaag
3001 ttatcttttc tttcttctgt ctttgtttgg taacttttaa aaaaaaaaaa aaaaaaaaaa
3061 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//