Typing tool
|
Complete norovirus genomes
EU424333 | GII.20 | ||
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GII.P20 |
ORF1: 5..5101 ORF2: 5082..6689 ORF3: 6689..7420LOCUS EU424333 7420 bp RNA linear VRL 16-FEB-2008 DEFINITION Norovirus Hu/GII/Leverkusen267/2005/DE nonstructural polyprotein and capsid protein genes, complete cds; and minor structural protein gene, partial cds. ACCESSION EU424333 VERSION EU424333.1 KEYWORDS . SOURCE Norovirus Hu/GII/Leverkusen267/2005/DE ORGANISM Norovirus Hu/GII/Leverkusen267/2005/DE Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7420) AUTHORS Hoehne,M. and Schreier,E. TITLE Molecular characterization of human norovirus strain from Germany JOURNAL Unpublished REFERENCE 2 (bases 1 to 7420) AUTHORS Hoehne,M. and Schreier,E. TITLE Direct Submission JOURNAL Submitted (24-JAN-2008) Molecular Epidemiology of Viral Pathogenes, Robert Koch-Institute, Nordufer 20, Berlin 13353, Germany FEATURES Location/Qualifiers source 1..7420 /organism="Norovirus Hu/GII/Leverkusen267/2005/DE" /mol_type="genomic RNA" /isolate="GII/Leverkusen267/2005/DE" /db_xref="taxon:502571" /country="Germany" CDS 5..5101 /codon_start=1 /product="nonstructural polyprotein" /protein_id="ABZ89548.1" /translation="MKMASNDATTALGSQTATNDSVNAPPPQKEEVSVLSNVKVGFKK MLGAVPKTPKQREKPVQPPTVSINGVEVEVPPPPPNGEDVVYYNSKNDTVEGLPDLTT VQNEHEHSPYTVPPLSEREHKPAMEPLPGTILEMWDGEFYHYSIYVNNGKALGVHKPP AAISVATIELTPISLYWRPVYTPPYLVHPDTLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLSRKSISRTTGFYKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFAGIVETVILAAELFNVFWTPPDVSNFIASLIGDFEMQ GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAYMKTLDLEEEKAR KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM ARQLAKTIAGTMAGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLANPAPLDYVNFEACCRRIDFLVYAEAP EIEKVKKDFPGQPDMWRDHFKPDSSHIRLSLAPQGGFDKNGNTPHGKGTMKTLTQGSL TARVAGLVHERRDEFQFQGDEVQLYNFDANRVSAFRKLAADNKYSLMETMKVGSALKN VKTLEDLKVALRTVKFKECEIIYKGSKYRVSSDGCGNVSVTKVKDMMSQTTNEVHSAL IRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISRRFSWERWIKPSEALPEDGQIS PTDSAEKWEVEPKDADPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRVREERGGK YTIEEYLQDRDRFYEEVAVARATEEDFCEEEIAKIRQRVFRPTKKQRKEERSVLGLVT GSEIRKRKPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSN LLITTTHVLPKGVRELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTIPGDC GCPYIYKRGNDIVVAGVHTAAARGGNTVICATQGPDGEAVLEGGDDKGTYCGAPILSV GKAPKLSTKTKFWRSSPEALPPGTYEPAYLGGKDPRVEKGPSLHQVMRDQLKPFTEPR GKPPNPTVLEEAKKTVMNVLEQTIDPAKPWTYAQACASLDKTTSSGSPHHLKKNDHWN GDSFTGPLADQASKANLMYEQAKHVSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG TMVRCARAFGGLLDSMKESCVALPCRVGMNMNEDGPIIFDKHSKYRFHYDADYSRWDS TQQRCILAAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTS QWNSIAHWIITLSAMAEVSGLSPEVIQANSCFSFYGDDEIVSTDINLDPAKLTQKLRE YGLVPTRPDKTEGPLVITENLHGLTFLRRTVTRDPAGWFGKLDQDSILRQLYWTRGPN HENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVISEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" CDS 5082..6689 /note="major structural protein" /codon_start=1 /product="capsid protein" /protein_id="ABZ89549.1" /translation="MKMASNDASPSSDGSANLVPEINNEVMALEPVAGAAIAAPVAGQ QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEVLLNLPLSPDINPYLAHLSRMYNGYAGG VEVEVVLAGNAFTAGKIIFAAVPPNFPPENLSPSQITMLPHIIVDVRQLEPVRIPLPD VRNNFYHYSRENDSTLRLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESKSKPFTIPILTIEEMTNSRFPAPLEMMTTGPSHDIVVQPQNGRCTIDGVLLGTT QLSPVNICSMRGVPTKRTNGTDNCFVQLENPNGSAYDPTEDIPAVLGSPDFVGEFYGT ITQRSPNNSTRAHPFTLNTGSPRYTPKIGSVDIHVTDVEDLNDHEPVKLTPVGLSGSS GSIHQWQLPNYSGVATHNMHLAPSVAPLFPGEQILFFRSTVPGCGGYPNTNIDCLIPQ EWVQHFYQEGAPARTDVALLRFVNPDTGRVLFECKLHKHGFITVAYSGNHDLVMPPNG YFRFESWVNQFHTLAPMGTGSGRRRIQ" CDS 6689..>7420 /codon_start=1 /product="minor structural protein" /protein_id="ABZ89550.1" /translation="MAGAFLANLAGGVASNGIGSLINAGANAINQKVEYDFNKQLQSA SFAHDKEMLQAQIQATSQLQRDMMAIKQEVLTAGGFSHADAARGAVGAPMTKLIDWSG TRYWAPNSMKTTGYSGTFTSQAPPQFTPYSKSAGKQSPSGAVSPSISSGSSVSSLRTQ STSLPSNRTMTTQSSGLSSSSRSRTSDWVRSQNERMSPFMDGALHTAFVSPPSSRASS SGTVSTVPKEVLDSWTPMFNTHRQPL" ORIGIN 1 gtgaatgaag atggcgtcta acgacgctac cactgccctt ggcagccaaa ccgctaccaa 61 tgacagcgta aatgcaccac cccctcaaaa agaggaagtg agtgtattat ccaacgtaaa 121 agttgggttt aagaagatgt tgggggctgt accgaaaact ccaaaacaac gagaaaaacc 181 ggtgcagccc cccacagtga gcattaatgg tgtggaagtt gaagtgccac cccccccccc 241 aaatggtgag gatgtggtct actacaacag taaaaacgac accgttgagg gcttgcctga 301 cctgaccaca gtccagaatg aacatgaaca ttccccctac acggtgcccc ctctaagtga 361 aagagaacac aaacccgcaa tggaaccatt accaggcacc atacttgaaa tgtgggatgg 421 tgagttttac cattattcca tatacgtcaa caacggcaag gcgcttggcg tgcacaaacc 481 acccgctgct ataagcgttg ccaccattga gttgactccc atatcattat attggaggcc 541 agtgtacact ccaccgtacc tagtgcatcc tgacaccctt aagggtctcg ctggagagaa 601 gttcccgtac acggcattca gtaacaattg ttacaacttc tgttgctggg ttctggacct 661 gaatgactcg tggttgagta ggaagtccat atccagaaca actggtttct ataagccata 721 tcaatcatgg aataggaaac ccctccccac agttgatgat ggaaaaatca agaaagtggc 781 caatgcagtg ttgtgtgctc ttggatcatt gttctcgaaa cccattaaag acctgcttgg 841 aaagttgaaa ccccttaacc tgctcaattt attggcatca tgtgactgga cattcgctgg 901 gatagtggag acggtcatcc tggcagcaga gttattcaat gtgttttgga ctccccctga 961 tgtgtccaat ttcatagcct ctttgattgg ggactttgaa atgcaagggc cggaagatct 1021 cgccgtggaa cttgtgcccg tagtgatggg agggattgga atggttctgg gtttcaccgc 1081 agaaaagata gggcgcatgc tttcttcggc tgcctccact ttaagggctt gcaaagacct 1141 agggaactac gccctagata tactcaagct ggttatgaag tggttcttcc ccaagaagga 1201 ggagaaggcc gagatggaaa ccctgagagc tatagaagat gcggttcttg acatggaagc 1261 aataggcaac aaccacttga ctacactgct caaagacaaa gacagcctaa ccgcctacat 1321 gaagaccctg gacttggaag aagagaaggc acgaaagctt tcgacaaaat catcatcacc 1381 agacattgtg ggcacaataa acgcgatctt ggccagaatc gcggctgcta gatcactcct 1441 tcacaaagct aaggaagaaa tgttcagcag gattagacct gttgtagtga tgatctctgg 1501 aagacccggc ataggaaaaa cccacatggc gaggcaattg gctaaaacaa ttgccggtac 1561 gatggcagga gaccagagag ttggacttgt cccccgcaat ggggttgacc actgggatgc 1621 ctacagagga gagagagtgg tcctgtggga cgactatggt atggggaaca caatcaagga 1681 tgccctcacc ctgcaagaac tggcggatac gtgccccgtc actctcaatt gtgacaggat 1741 tgagaacaaa gggaaaatgt tcgacagcga tgtcatcata ataaccacta acctggccaa 1801 cccagcacct ctcgactacg tcaacttcga ggcctgctgc aggagaattg acttcctagt 1861 ctatgctgaa gctccagaaa tagaaaaagt gaagaaagac ttcccaggac aaccggacat 1921 gtggcgcgac cacttcaaac cagactcatc ccacattaga ctgtccctgg cccctcaagg 1981 tgggtttgat aagaacggaa acaccccaca cggaaaaggg acgatgaaga ctctcaccca 2041 gggctccctt actgctcgtg tagctggcct agtgcacgag aggagggacg agttccagtt 2101 tcaaggggat gaggtgcaac tttacaactt tgatgccaac agagtgtctg cgtttaggaa 2161 gctagcagct gacaacaaat acagtctcat ggaaactatg aaggttggtt ctgctctcaa 2221 gaatgtcaaa accctagaag acctaaaggt cgcactcagg accgtgaaat tcaaggagtg 2281 cgaaataata tacaaagggt caaagtaccg tgtctcatct gatggatgtg ggaatgtctc 2341 agtcaccaaa gtgaaagaca tgatgtcaca gaccaccaat gaggtccact cagccttgat 2401 tagattgaga caagcccggg ctaggtacta cattagctgc ttccaagacc tgatttacac 2461 ccttatccag gtcgccggtg cttcctttgt tgtgcacaga atatcaagga gattctcatg 2521 ggaacggtgg atcaaaccct ctgaggccct tcctgaggat ggccaaatca gtccaacaga 2581 cagtgctgaa aagtgggaag tcgagccgaa agatgccgac ccagaaggca agaaaggtaa 2641 gaataagaaa ggtagaggca ggaagcacac agccttctct agcaagggtc tcagtgatga 2701 agagtatgat gaattcaaaa gagtgaggga agaaaggggt ggaaagtaca ccattgagga 2761 atatctccaa gacagagacc gtttttatga agaggtggca gtagctcgtg ccactgaaga 2821 ggacttctgt gaggaagaaa ttgccaagat cagacagcgg gtctttagac ccaccaagaa 2881 gcaaaggaaa gaagagcgca gtgtccttgg ccttgtgact gggtctgaaa tcaggaaaag 2941 aaaaccagat gacttccaac caaagggcaa cctctgggct gatgacacaa gaagtgtaga 3001 ttacaatgag aggctagact ttgaggcccc acctagtgtc tggtcacgta tagttcctct 3061 gggcactggc tggggcttct gggtctcatc aaatctactc ataaccacca ctcatgtact 3121 accaaaaggt gttagagagc tatttggtgt tgatataaaa caagttcaaa tacacaagtc 3181 aggtgaattt tgcagattca gatttccccg accaatcagg ccagatgtga ccgggttgat 3241 cctagaagaa ggggcgcccg aaggcacagt gtgttcaatc ctagtaaagc gacccacagg 3301 ggagatgatc cccctcgctg ttagaatggg gacacacgct tccatgaaga tacaaggcag 3361 aacagttggt ggacagatgg gcatgcttct caccggagcg aacgccaaga acatggactt 3421 gggaaccata ccaggcgatt gtggctgtcc atatatttac aaaaggggca atgatattgt 3481 agtagctgga gtccacactg ctgctgcaag aggagggaac actgtcatct gtgccacaca 3541 aggacctgat ggagaggccg ttctggaagg aggagatgac aaaggaacat actgtggtgc 3601 gccaatactc agtgttggca aggcccctaa attgagcaca aaaacaaaat tctggcgatc 3661 atccccagag gcattgccac caggaacgta cgaacctgcc tacctaggtg gcaaagaccc 3721 cagggttgaa aaagggcctt cactccatca ggtcatgaga gatcaattga agcccttcac 3781 cgagcccagg gggaagccgc caaaccccac tgtacttgaa gaagccaaaa agaccgtcat 3841 gaatgttctt gaacaaacca tagaccctgc aaaaccttgg acctatgccc aagcctgcgc 3901 ctctctcgat aaaaccacct ccagtggcag tccccaccac ctgaagaaga acgaccactg 3961 gaatggagac tctttcacag gacccttggc tgatcaagcc tctaaagcta acctgatgta 4021 tgaacaggcg aaacacgtca gtcctgttta tacggcagcc ctcaaggatg aactagtcaa 4081 aacagacaag atctacaaaa agattaagaa gagactgttg tggggatctg atctgggcac 4141 tatggtcaga tgtgctaggg cctttggggg tctccttgac agtatgaaag agagctgtgt 4201 ggctttacct tgtagagttg gtatgaatat gaatgaagat ggccccatta tatttgacaa 4261 gcattcaaaa tacagattcc actatgatgc tgactactcc aggtgggatt caacacagca 4321 aagatgcatc ctggccgcag caatggaggt catggttaag ttctcagctg aacccgagct 4381 ggcccaggtg gttgcagaag acttgctagc ccctagtcag ctcgacgttg gggattttgt 4441 gatctctgtg caggagggcc ttccttctgg tgttccttgc acctcacagt ggaattcaat 4501 agcgcactgg atcattaccc taagcgctat ggcagaagtg tccggtcttt ccccagaagt 4561 catacaggcc aactcatgct tttctttcta cggggatgac gagatagtga gcactgatat 4621 taacttagac ccagccaaac tgactcagaa attgagagaa tatgggttag tgcccaccag 4681 accagacaag acagaaggcc ccttagtcat cactgaaaac ttgcatggac taacatttct 4741 gcgaagaact gttacccgtg acccagcagg ttggtttgga aaactggatc aagactcaat 4801 cctaaggcag ctctactgga caagaggccc aaaccatgag aacccctacg aaagcatggt 4861 cccccattca caacgtgcca ctcagctcat ggccctctta ggggaggcct ctctccatgg 4921 accccaattc tacaagaaag tcagcaagat ggttatcagt gagataaaaa gtggtggtct 4981 ggagttttat gtgcccagac aagaggctat gttcagatgg atgagatttt cagacctcag 5041 cacatgggag ggcgatcgca atctggctcc cgatggtgtg aatgaagatg gcgtcgaatg 5101 acgctagtcc gtccagtgac ggatcagcca acctcgtccc agagatcaat aatgaggtga 5161 tggctcttga accagtggct ggtgctgcta ttgctgcccc ggttgctggg caacagaata 5221 taatagatcc ctggattaga aataactttg tgcaggcccc tggtggcgag ttcactgttt 5281 caccaagaaa cgccccgggg gaagtacttc taaatttacc tctaagccct gatatcaatc 5341 catatttggc ccatttgtcc cgaatgtaca atggttatgc tggaggcgtg gaggtggagg 5401 tggtcctcgc cgggaatgcg ttcacggcgg gaaaaatcat ctttgccgca gtgccaccca 5461 attttcctcc tgagaacctt agtccaagtc aaataacaat gctcccccat atcatagttg 5521 atgtcaggca attggaacca gtgcgcatac ctttaccaga tgtgcgcaac aatttctatc 5581 attattctag agaaaatgac tccacattga gattgattgc aatgttgtac actcccctta 5641 gagctaataa tgctggtgat gatgtgttta ctgtctcttg tagggtgttg acaaggcctt 5701 ctcctgattt tgatttcata ttcctggtgc cacccacagt tgaatctaaa tctaaaccct 5761 tcactatccc aatactcact attgaggaaa tgaccaattc taggtttcct gccccgttag 5821 agatgatgac cacaggtccg agccacgaca ttgttgtgca accacaaaac gggcgctgca 5881 ccattgatgg cgtgctgctc ggcactacac agctgtcccc agttaacatc tgctccatga 5941 ggggtgttcc taccaagcga accaatggga ctgacaattg ctttgtgcaa ctcgagaacc 6001 caaacggttc agcttatgat ccaacagagg acataccagc agtcctgggg tcacctgact 6061 ttgtgggaga gttctacggg acaatcaccc agaggagccc aaataattca actagagccc 6121 accctttcac cctcaacact ggaagcccta ggtacactcc caaaattggc tcagtggaca 6181 tccacgtcac agacgttgaa gacctcaacg atcacgagcc agtgaaactc actccagtcg 6241 gtctctctgg tagcagtggt tcaatccatc agtggcagct gccaaattac tcaggagtgg 6301 caacccacaa tatgcacttg gccccatctg tcgctccatt gttccctggt gagcagattc 6361 ttttcttccg gtccacagtc cccgggtgtg gtggttatcc aaacacaaac atcgactgtt 6421 tgattcctca agagtgggtc caacacttct accaggaagg tgctccagcc cgtactgatg 6481 tggccctgct cagatttgta aaccctgaca cgggcagagt gctctttgag tgtaaattgc 6541 ataagcatgg ctttattact gtggcttact ctggaaacca tgatttggtt atgcccccaa 6601 atggttattt tagatttgag tcttgggtga atcaatttca cactcttgcc cccatgggaa 6661 caggttcggg cagaaggaga atccagtaat ggcaggagca tttctagcaa atctggccgg 6721 tggcgtggca tcaaacggga ttggctctct gatcaacgca ggtgccaacg ctatcaatca 6781 aaaagttgag tatgatttta ataagcaact ccagagcgca tcgttcgctc acgataaaga 6841 gatgctccag gcacaaattc aggcaacaag tcagctccaa cgtgacatga tggccatcaa 6901 gcaagaggtg ttgaccgctg gcggcttctc tcacgctgat gcagccaggg gcgcggttgg 6961 agcgccaatg acaaagttga tcgactggag cggcacaaga tactgggccc caaattccat 7021 gaaaacaaca ggctattctg gaactttcac cagccaagct cccccacagt ttacccccta 7081 ttctaagagt gcaggcaaac aatcaccctc tggggcagtg tcgccctcaa tttcttctgg 7141 ctcttctgtg agctctttga gaacacaatc aacttccttg ccatctaatc ggactatgac 7201 aacacaatca tcaggcctct cttcatcctc tcgatctagg acatcagatt gggtgcgcag 7261 tcaaaacgag agaatgagcc cattcatgga cggggcactc catacagctt ttgtgtcccc 7321 cccatcgagt agggcttcta gttctggcac agtctcaacc gtgccaaagg aggttttgga 7381 ctcctggact cctatgttta acactcacag acagccgctc //