Typing tool
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Typing tool
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Complete norovirus genomes
| EU424333 | GII.20 | |
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| GII.P20 |
ORF1: 5..5101
ORF2: 5082..6689
ORF3: 6689..7420
LOCUS EU424333 7420 bp RNA linear VRL 16-FEB-2008
DEFINITION Norovirus Hu/GII/Leverkusen267/2005/DE nonstructural polyprotein
and capsid protein genes, complete cds; and minor structural
protein gene, partial cds.
ACCESSION EU424333
VERSION EU424333.1
KEYWORDS .
SOURCE Norovirus Hu/GII/Leverkusen267/2005/DE
ORGANISM Norovirus Hu/GII/Leverkusen267/2005/DE
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7420)
AUTHORS Hoehne,M. and Schreier,E.
TITLE Molecular characterization of human norovirus strain from Germany
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7420)
AUTHORS Hoehne,M. and Schreier,E.
TITLE Direct Submission
JOURNAL Submitted (24-JAN-2008) Molecular Epidemiology of Viral Pathogenes,
Robert Koch-Institute, Nordufer 20, Berlin 13353, Germany
FEATURES Location/Qualifiers
source 1..7420
/organism="Norovirus Hu/GII/Leverkusen267/2005/DE"
/mol_type="genomic RNA"
/isolate="GII/Leverkusen267/2005/DE"
/db_xref="taxon:502571"
/geo_loc_name="Germany"
CDS 5..5101
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ABZ89548.1"
/translation="MKMASNDATTALGSQTATNDSVNAPPPQKEEVSVLSNVKVGFKK
MLGAVPKTPKQREKPVQPPTVSINGVEVEVPPPPPNGEDVVYYNSKNDTVEGLPDLTT
VQNEHEHSPYTVPPLSEREHKPAMEPLPGTILEMWDGEFYHYSIYVNNGKALGVHKPP
AAISVATIELTPISLYWRPVYTPPYLVHPDTLKGLAGEKFPYTAFSNNCYNFCCWVLD
LNDSWLSRKSISRTTGFYKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD
LLGKLKPLNLLNLLASCDWTFAGIVETVILAAELFNVFWTPPDVSNFIASLIGDFEMQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAYMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARQLAKTIAGTMAGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLANPAPLDYVNFEACCRRIDFLVYAEAP
EIEKVKKDFPGQPDMWRDHFKPDSSHIRLSLAPQGGFDKNGNTPHGKGTMKTLTQGSL
TARVAGLVHERRDEFQFQGDEVQLYNFDANRVSAFRKLAADNKYSLMETMKVGSALKN
VKTLEDLKVALRTVKFKECEIIYKGSKYRVSSDGCGNVSVTKVKDMMSQTTNEVHSAL
IRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISRRFSWERWIKPSEALPEDGQIS
PTDSAEKWEVEPKDADPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRVREERGGK
YTIEEYLQDRDRFYEEVAVARATEEDFCEEEIAKIRQRVFRPTKKQRKEERSVLGLVT
GSEIRKRKPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSN
LLITTTHVLPKGVRELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT
VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTIPGDC
GCPYIYKRGNDIVVAGVHTAAARGGNTVICATQGPDGEAVLEGGDDKGTYCGAPILSV
GKAPKLSTKTKFWRSSPEALPPGTYEPAYLGGKDPRVEKGPSLHQVMRDQLKPFTEPR
GKPPNPTVLEEAKKTVMNVLEQTIDPAKPWTYAQACASLDKTTSSGSPHHLKKNDHWN
GDSFTGPLADQASKANLMYEQAKHVSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG
TMVRCARAFGGLLDSMKESCVALPCRVGMNMNEDGPIIFDKHSKYRFHYDADYSRWDS
TQQRCILAAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTS
QWNSIAHWIITLSAMAEVSGLSPEVIQANSCFSFYGDDEIVSTDINLDPAKLTQKLRE
YGLVPTRPDKTEGPLVITENLHGLTFLRRTVTRDPAGWFGKLDQDSILRQLYWTRGPN
HENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVISEIKSGGLEFYVPRQEA
MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE"
CDS 5082..6689
/note="major structural protein"
/codon_start=1
/product="capsid protein"
/protein_id="ABZ89549.1"
/translation="MKMASNDASPSSDGSANLVPEINNEVMALEPVAGAAIAAPVAGQ
QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEVLLNLPLSPDINPYLAHLSRMYNGYAGG
VEVEVVLAGNAFTAGKIIFAAVPPNFPPENLSPSQITMLPHIIVDVRQLEPVRIPLPD
VRNNFYHYSRENDSTLRLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESKSKPFTIPILTIEEMTNSRFPAPLEMMTTGPSHDIVVQPQNGRCTIDGVLLGTT
QLSPVNICSMRGVPTKRTNGTDNCFVQLENPNGSAYDPTEDIPAVLGSPDFVGEFYGT
ITQRSPNNSTRAHPFTLNTGSPRYTPKIGSVDIHVTDVEDLNDHEPVKLTPVGLSGSS
GSIHQWQLPNYSGVATHNMHLAPSVAPLFPGEQILFFRSTVPGCGGYPNTNIDCLIPQ
EWVQHFYQEGAPARTDVALLRFVNPDTGRVLFECKLHKHGFITVAYSGNHDLVMPPNG
YFRFESWVNQFHTLAPMGTGSGRRRIQ"
CDS 6689..>7420
/codon_start=1
/product="minor structural protein"
/protein_id="ABZ89550.1"
/translation="MAGAFLANLAGGVASNGIGSLINAGANAINQKVEYDFNKQLQSA
SFAHDKEMLQAQIQATSQLQRDMMAIKQEVLTAGGFSHADAARGAVGAPMTKLIDWSG
TRYWAPNSMKTTGYSGTFTSQAPPQFTPYSKSAGKQSPSGAVSPSISSGSSVSSLRTQ
STSLPSNRTMTTQSSGLSSSSRSRTSDWVRSQNERMSPFMDGALHTAFVSPPSSRASS
SGTVSTVPKEVLDSWTPMFNTHRQPL"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cactgccctt ggcagccaaa ccgctaccaa
61 tgacagcgta aatgcaccac cccctcaaaa agaggaagtg agtgtattat ccaacgtaaa
121 agttgggttt aagaagatgt tgggggctgt accgaaaact ccaaaacaac gagaaaaacc
181 ggtgcagccc cccacagtga gcattaatgg tgtggaagtt gaagtgccac cccccccccc
241 aaatggtgag gatgtggtct actacaacag taaaaacgac accgttgagg gcttgcctga
301 cctgaccaca gtccagaatg aacatgaaca ttccccctac acggtgcccc ctctaagtga
361 aagagaacac aaacccgcaa tggaaccatt accaggcacc atacttgaaa tgtgggatgg
421 tgagttttac cattattcca tatacgtcaa caacggcaag gcgcttggcg tgcacaaacc
481 acccgctgct ataagcgttg ccaccattga gttgactccc atatcattat attggaggcc
541 agtgtacact ccaccgtacc tagtgcatcc tgacaccctt aagggtctcg ctggagagaa
601 gttcccgtac acggcattca gtaacaattg ttacaacttc tgttgctggg ttctggacct
661 gaatgactcg tggttgagta ggaagtccat atccagaaca actggtttct ataagccata
721 tcaatcatgg aataggaaac ccctccccac agttgatgat ggaaaaatca agaaagtggc
781 caatgcagtg ttgtgtgctc ttggatcatt gttctcgaaa cccattaaag acctgcttgg
841 aaagttgaaa ccccttaacc tgctcaattt attggcatca tgtgactgga cattcgctgg
901 gatagtggag acggtcatcc tggcagcaga gttattcaat gtgttttgga ctccccctga
961 tgtgtccaat ttcatagcct ctttgattgg ggactttgaa atgcaagggc cggaagatct
1021 cgccgtggaa cttgtgcccg tagtgatggg agggattgga atggttctgg gtttcaccgc
1081 agaaaagata gggcgcatgc tttcttcggc tgcctccact ttaagggctt gcaaagacct
1141 agggaactac gccctagata tactcaagct ggttatgaag tggttcttcc ccaagaagga
1201 ggagaaggcc gagatggaaa ccctgagagc tatagaagat gcggttcttg acatggaagc
1261 aataggcaac aaccacttga ctacactgct caaagacaaa gacagcctaa ccgcctacat
1321 gaagaccctg gacttggaag aagagaaggc acgaaagctt tcgacaaaat catcatcacc
1381 agacattgtg ggcacaataa acgcgatctt ggccagaatc gcggctgcta gatcactcct
1441 tcacaaagct aaggaagaaa tgttcagcag gattagacct gttgtagtga tgatctctgg
1501 aagacccggc ataggaaaaa cccacatggc gaggcaattg gctaaaacaa ttgccggtac
1561 gatggcagga gaccagagag ttggacttgt cccccgcaat ggggttgacc actgggatgc
1621 ctacagagga gagagagtgg tcctgtggga cgactatggt atggggaaca caatcaagga
1681 tgccctcacc ctgcaagaac tggcggatac gtgccccgtc actctcaatt gtgacaggat
1741 tgagaacaaa gggaaaatgt tcgacagcga tgtcatcata ataaccacta acctggccaa
1801 cccagcacct ctcgactacg tcaacttcga ggcctgctgc aggagaattg acttcctagt
1861 ctatgctgaa gctccagaaa tagaaaaagt gaagaaagac ttcccaggac aaccggacat
1921 gtggcgcgac cacttcaaac cagactcatc ccacattaga ctgtccctgg cccctcaagg
1981 tgggtttgat aagaacggaa acaccccaca cggaaaaggg acgatgaaga ctctcaccca
2041 gggctccctt actgctcgtg tagctggcct agtgcacgag aggagggacg agttccagtt
2101 tcaaggggat gaggtgcaac tttacaactt tgatgccaac agagtgtctg cgtttaggaa
2161 gctagcagct gacaacaaat acagtctcat ggaaactatg aaggttggtt ctgctctcaa
2221 gaatgtcaaa accctagaag acctaaaggt cgcactcagg accgtgaaat tcaaggagtg
2281 cgaaataata tacaaagggt caaagtaccg tgtctcatct gatggatgtg ggaatgtctc
2341 agtcaccaaa gtgaaagaca tgatgtcaca gaccaccaat gaggtccact cagccttgat
2401 tagattgaga caagcccggg ctaggtacta cattagctgc ttccaagacc tgatttacac
2461 ccttatccag gtcgccggtg cttcctttgt tgtgcacaga atatcaagga gattctcatg
2521 ggaacggtgg atcaaaccct ctgaggccct tcctgaggat ggccaaatca gtccaacaga
2581 cagtgctgaa aagtgggaag tcgagccgaa agatgccgac ccagaaggca agaaaggtaa
2641 gaataagaaa ggtagaggca ggaagcacac agccttctct agcaagggtc tcagtgatga
2701 agagtatgat gaattcaaaa gagtgaggga agaaaggggt ggaaagtaca ccattgagga
2761 atatctccaa gacagagacc gtttttatga agaggtggca gtagctcgtg ccactgaaga
2821 ggacttctgt gaggaagaaa ttgccaagat cagacagcgg gtctttagac ccaccaagaa
2881 gcaaaggaaa gaagagcgca gtgtccttgg ccttgtgact gggtctgaaa tcaggaaaag
2941 aaaaccagat gacttccaac caaagggcaa cctctgggct gatgacacaa gaagtgtaga
3001 ttacaatgag aggctagact ttgaggcccc acctagtgtc tggtcacgta tagttcctct
3061 gggcactggc tggggcttct gggtctcatc aaatctactc ataaccacca ctcatgtact
3121 accaaaaggt gttagagagc tatttggtgt tgatataaaa caagttcaaa tacacaagtc
3181 aggtgaattt tgcagattca gatttccccg accaatcagg ccagatgtga ccgggttgat
3241 cctagaagaa ggggcgcccg aaggcacagt gtgttcaatc ctagtaaagc gacccacagg
3301 ggagatgatc cccctcgctg ttagaatggg gacacacgct tccatgaaga tacaaggcag
3361 aacagttggt ggacagatgg gcatgcttct caccggagcg aacgccaaga acatggactt
3421 gggaaccata ccaggcgatt gtggctgtcc atatatttac aaaaggggca atgatattgt
3481 agtagctgga gtccacactg ctgctgcaag aggagggaac actgtcatct gtgccacaca
3541 aggacctgat ggagaggccg ttctggaagg aggagatgac aaaggaacat actgtggtgc
3601 gccaatactc agtgttggca aggcccctaa attgagcaca aaaacaaaat tctggcgatc
3661 atccccagag gcattgccac caggaacgta cgaacctgcc tacctaggtg gcaaagaccc
3721 cagggttgaa aaagggcctt cactccatca ggtcatgaga gatcaattga agcccttcac
3781 cgagcccagg gggaagccgc caaaccccac tgtacttgaa gaagccaaaa agaccgtcat
3841 gaatgttctt gaacaaacca tagaccctgc aaaaccttgg acctatgccc aagcctgcgc
3901 ctctctcgat aaaaccacct ccagtggcag tccccaccac ctgaagaaga acgaccactg
3961 gaatggagac tctttcacag gacccttggc tgatcaagcc tctaaagcta acctgatgta
4021 tgaacaggcg aaacacgtca gtcctgttta tacggcagcc ctcaaggatg aactagtcaa
4081 aacagacaag atctacaaaa agattaagaa gagactgttg tggggatctg atctgggcac
4141 tatggtcaga tgtgctaggg cctttggggg tctccttgac agtatgaaag agagctgtgt
4201 ggctttacct tgtagagttg gtatgaatat gaatgaagat ggccccatta tatttgacaa
4261 gcattcaaaa tacagattcc actatgatgc tgactactcc aggtgggatt caacacagca
4321 aagatgcatc ctggccgcag caatggaggt catggttaag ttctcagctg aacccgagct
4381 ggcccaggtg gttgcagaag acttgctagc ccctagtcag ctcgacgttg gggattttgt
4441 gatctctgtg caggagggcc ttccttctgg tgttccttgc acctcacagt ggaattcaat
4501 agcgcactgg atcattaccc taagcgctat ggcagaagtg tccggtcttt ccccagaagt
4561 catacaggcc aactcatgct tttctttcta cggggatgac gagatagtga gcactgatat
4621 taacttagac ccagccaaac tgactcagaa attgagagaa tatgggttag tgcccaccag
4681 accagacaag acagaaggcc ccttagtcat cactgaaaac ttgcatggac taacatttct
4741 gcgaagaact gttacccgtg acccagcagg ttggtttgga aaactggatc aagactcaat
4801 cctaaggcag ctctactgga caagaggccc aaaccatgag aacccctacg aaagcatggt
4861 cccccattca caacgtgcca ctcagctcat ggccctctta ggggaggcct ctctccatgg
4921 accccaattc tacaagaaag tcagcaagat ggttatcagt gagataaaaa gtggtggtct
4981 ggagttttat gtgcccagac aagaggctat gttcagatgg atgagatttt cagacctcag
5041 cacatgggag ggcgatcgca atctggctcc cgatggtgtg aatgaagatg gcgtcgaatg
5101 acgctagtcc gtccagtgac ggatcagcca acctcgtccc agagatcaat aatgaggtga
5161 tggctcttga accagtggct ggtgctgcta ttgctgcccc ggttgctggg caacagaata
5221 taatagatcc ctggattaga aataactttg tgcaggcccc tggtggcgag ttcactgttt
5281 caccaagaaa cgccccgggg gaagtacttc taaatttacc tctaagccct gatatcaatc
5341 catatttggc ccatttgtcc cgaatgtaca atggttatgc tggaggcgtg gaggtggagg
5401 tggtcctcgc cgggaatgcg ttcacggcgg gaaaaatcat ctttgccgca gtgccaccca
5461 attttcctcc tgagaacctt agtccaagtc aaataacaat gctcccccat atcatagttg
5521 atgtcaggca attggaacca gtgcgcatac ctttaccaga tgtgcgcaac aatttctatc
5581 attattctag agaaaatgac tccacattga gattgattgc aatgttgtac actcccctta
5641 gagctaataa tgctggtgat gatgtgttta ctgtctcttg tagggtgttg acaaggcctt
5701 ctcctgattt tgatttcata ttcctggtgc cacccacagt tgaatctaaa tctaaaccct
5761 tcactatccc aatactcact attgaggaaa tgaccaattc taggtttcct gccccgttag
5821 agatgatgac cacaggtccg agccacgaca ttgttgtgca accacaaaac gggcgctgca
5881 ccattgatgg cgtgctgctc ggcactacac agctgtcccc agttaacatc tgctccatga
5941 ggggtgttcc taccaagcga accaatggga ctgacaattg ctttgtgcaa ctcgagaacc
6001 caaacggttc agcttatgat ccaacagagg acataccagc agtcctgggg tcacctgact
6061 ttgtgggaga gttctacggg acaatcaccc agaggagccc aaataattca actagagccc
6121 accctttcac cctcaacact ggaagcccta ggtacactcc caaaattggc tcagtggaca
6181 tccacgtcac agacgttgaa gacctcaacg atcacgagcc agtgaaactc actccagtcg
6241 gtctctctgg tagcagtggt tcaatccatc agtggcagct gccaaattac tcaggagtgg
6301 caacccacaa tatgcacttg gccccatctg tcgctccatt gttccctggt gagcagattc
6361 ttttcttccg gtccacagtc cccgggtgtg gtggttatcc aaacacaaac atcgactgtt
6421 tgattcctca agagtgggtc caacacttct accaggaagg tgctccagcc cgtactgatg
6481 tggccctgct cagatttgta aaccctgaca cgggcagagt gctctttgag tgtaaattgc
6541 ataagcatgg ctttattact gtggcttact ctggaaacca tgatttggtt atgcccccaa
6601 atggttattt tagatttgag tcttgggtga atcaatttca cactcttgcc cccatgggaa
6661 caggttcggg cagaaggaga atccagtaat ggcaggagca tttctagcaa atctggccgg
6721 tggcgtggca tcaaacggga ttggctctct gatcaacgca ggtgccaacg ctatcaatca
6781 aaaagttgag tatgatttta ataagcaact ccagagcgca tcgttcgctc acgataaaga
6841 gatgctccag gcacaaattc aggcaacaag tcagctccaa cgtgacatga tggccatcaa
6901 gcaagaggtg ttgaccgctg gcggcttctc tcacgctgat gcagccaggg gcgcggttgg
6961 agcgccaatg acaaagttga tcgactggag cggcacaaga tactgggccc caaattccat
7021 gaaaacaaca ggctattctg gaactttcac cagccaagct cccccacagt ttacccccta
7081 ttctaagagt gcaggcaaac aatcaccctc tggggcagtg tcgccctcaa tttcttctgg
7141 ctcttctgtg agctctttga gaacacaatc aacttccttg ccatctaatc ggactatgac
7201 aacacaatca tcaggcctct cttcatcctc tcgatctagg acatcagatt gggtgcgcag
7261 tcaaaacgag agaatgagcc cattcatgga cggggcactc catacagctt ttgtgtcccc
7321 cccatcgagt agggcttcta gttctggcac agtctcaacc gtgccaaagg aggttttgga
7381 ctcctggact cctatgttta acactcacag acagccgctc
//