Human calicivirus
Typing tool

Complete norovirus genomes

EU366113  GII.4 Den Haag
 GII.P4 Den Haag

Length: 3,282 | 3 CDS 

ORF1: 1..826
ORF2: 807..2429
ORF3: 2429..3235

LOCUS       EU366113                3282 bp    RNA     linear   VRL 26-JUL-2016
DEFINITION  Norovirus Hu/Duan/Beijing/2006/China non-structural polyprotein
            gene, partial cds; and capsid protein VP1 and minor structural
            protein VP2 genes, complete cds.
ACCESSION   EU366113
VERSION     EU366113.1
KEYWORDS    .
SOURCE      Norovirus Hu/Duan/Beijing/2006/China
  ORGANISM  Norovirus Hu/Duan/Beijing/2006/China
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 3282)
  AUTHORS   Wu,S., Li,Y. and Lin,X.
  TITLE     Amplification of an isolate strain of Norovirus by 3' RACE method
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3282)
  AUTHORS   Wu,S., Li,Y. and Lin,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-DEC-2007) Institute of Animal and Plant Quarantine,
            Chinese Academy of Inspection and Quarantine, Huixinli Bldg. No.
            241, Huixinxijie, Chaoyang District, Beijing 100029, China
FEATURES             Location/Qualifiers
     source          1..3282
                     /organism="Norovirus Hu/Duan/Beijing/2006/China"
                     /mol_type="genomic RNA"
                     /strain="Norovirus Hu/Duan/Beijing/2006/China"
                     /host="Homo sapiens"
                     /db_xref="taxon:493779"
                     /country="China"
                     /collection_date="2006"
     CDS             <1..826
                     /note="ORF1"
                     /codon_start=2
                     /product="non-structural polyprotein"
                     /protein_id="ABY65349.1"
                     /translation="YHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLL
                     SPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLF
                     SFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVT
                     RDPAGWFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAALHGPTF
                     YSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             807..2429
                     /note="ORF2"
                     /codon_start=1
                     /product="capsid protein VP1"
                     /protein_id="ABY65350.1"
                     /translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
                     QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
                     FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
                     VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
                     TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
                     QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
                     TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQSSTDTENDFETHQNTKFTPVGVIQDG
                     STTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPTFPGEQLLFFRSTVPGCSGYPNMDLD
                     CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
                     IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
     CDS             2429..3235
                     /note="ORF3"
                     /codon_start=1
                     /product="minor structural protein VP2"
                     /protein_id="ABY65351.1"
                     /translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA
                     SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
                     APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRTPTPARGSPSTSS
                     NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
                     SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
     polyA_site      3282
ORIGIN      
        1 ataccactat gatgcagatt actctcggtg ggattcaaca caacagagag ccgtgctggc
       61 agctgctcta gaaatcatgg ttaaattctc ctcagaacca catttggctc aggtagtagc
      121 agaagacctt ctttctccta gcgtggtgga tgtgggtgac ttcacaatat caatcaacga
      181 gggtcttccc tctggggtgc cctgcacctc ccaatggaac tccatcgccc actggcttct
      241 cactctctgt gcactctccg aagttacaaa tttgtcccca gacatcatac aggctaattc
      301 tctcttctcc ttctatggtg atgatgaaat tgttagtaca gacataaaat tagacccaga
      361 gaagttgaca gcaaagctta aggaatacgg gttgaaacca acccgccctg ataaaactga
      421 aggacctctt gttatttctg aagacttaga tggtttgact ttcctgcgga gaactgtgac
      481 ccgcgaccca gctggttggt ttggaaaact ggagcagagc tcaatactca ggcaaatgta
      541 ctggactagg ggccccaacc atgaagatcc atctgaatca atgattccac actctcaaag
      601 acccatacaa ttgatgtcct tactgggaga ggccgcactc cacggcccaa cattctacag
      661 taaaatcagc aaattagtca ttgcagagct aaaagaaggt ggtatggatt tttacgtgcc
      721 caggcaagag ccaatgttca gatggatgag attctcagat ctgagcacgt gggagggcga
      781 tcgcaatctg gctcccagtt ttgtgaatga agatggcgtc gaatgacgcc aacccatctg
      841 atgggtccgc agccaacctc gtcccagagg tcaacaatga ggttatggct ttggagcccg
      901 ttgtcggtgc cgctattgcg gcgcctgtag cgggccaaca aaatgtaatt gacccctgga
      961 ttagaaataa ttttgtacaa gcccctggtg gagagttcac agtatcccct agaaacgctc
     1021 caggtgaaat actatggagc gcgcccttag gccctgatct gaatccctac ctatctcatt
     1081 tggccagaat gtataatggt tatgcaggtg gttttgaagt gcaggtgatc ctcgcgggga
     1141 acgcgttcac cgccggaaaa attatatttg cagcagtccc accaaatttt ccaactgaag
     1201 gcttgagtcc cagccaggtc actatgttcc cccacataat agtggatgtt aggcaattgg
     1261 aacctgtgtt gatcccctta cctgatgtta ggaataactt ctatcattat aatcagtcaa
     1321 atgattctac cattaaattg atagcaatgc tgtatacacc acttagggct aataatgctg
     1381 gggaagatgt cttcacagtc tcttgtcgag ttctcacgag gccatcccct gattttgatt
     1441 ttatattttt ggtgccacct acagttgagt caagaactaa accatttact gtcccaatct
     1501 taactgttga agaaatgacc aattcaagat tccccattcc tttggaaaaa ttgttcacgg
     1561 gtcccagcag tgcctttgtt gttcaaccac aaaatggcag atgcacgact gatggcgtgc
     1621 tcttaggcac cacccaactg tctcctgtca acatctgcac cttcagaggg gatgtcaccc
     1681 acattgcagg ttctcgtaat tacacaatga atttggcttc tctaaattgg aacaattatg
     1741 acccaacaga agaaattcca gcccctctag gaactccaga tttcgtggga aagatccaag
     1801 gtgtgctcac tcaaaccaca aagggagatg gttcgacccg tggccataaa gctacagttt
     1861 acactgggag tgcccccttt actccaaagc tgggcagtgt tcaatccagt actgatacag
     1921 aaaatgattt tgaaactcac caaaacacaa aattcacccc agtcggtgtc atccaggatg
     1981 gtagcaccac ccaccgaaat gaaccccaac aatgggtgct cccaagttat tcaggtagaa
     2041 atgtccataa tgtacaccta gcccctgctg tagcccccac ttttcccggt gaacaacttc
     2101 ttttctttag gtccactgtg cccggatgca gcgggtatcc caacatggat ttggattgcc
     2161 tactccccca ggagtgggtg cagcacttct accaagaggc agctccagca caatctgatg
     2221 tggctctatt gagatttgtg aatccagaca cgggtagggt cctgtttgag tgcaaacttc
     2281 ataaatcagg ctatgttaca gtggctcaca ccggccagca tgatttggtc atccccccca
     2341 atggttattt taggtttgat tcctgggtta atcaattcta cacacttgcc cccatgggaa
     2401 atgggacggg gcgtagacgt gctttataat ggctggagct ttctttgctg gattggcatc
     2461 tgatgtcctt agctctggac ttggttccct aatcaatgct ggggctgggg ctatcaacca
     2521 aaagattgat tttgaaaata acagaaaatt gcagcaagct tccttccagt ttagcagtaa
     2581 tctacaacag gcttcctttc aacatgataa agagatgctc caagcacaaa ttgaggccac
     2641 taaaaagttg caacaggaaa tgatgaaagt caaacaggca atgctcttag aaggtggatt
     2701 ctctgaaaca gatgcagccc gtggggcaat caacgcccct atgacaaagg ctttggactg
     2761 gagcggaaca aggtactggg cccctgatgc taggactaca acatacaatg caggccgttt
     2821 ttccacccct caaccttcgg gggcactgcc aggaagaatc aatcccagga ctcctacccc
     2881 cgctcggggc tcccccagca catcttctaa tgcttctact gctacttcta tatattcaaa
     2941 tcaaactgtt tcaacgagac ttggttctac agctggttct ggcaccaatg tctcgagtct
     3001 cccgtcaact gcaaggacta ggagttgggt tgaggatcaa aacagaaatt tgtcaccttt
     3061 catgaggggg gctcacaaca tatcgtttgt caccccacca tctagcagat cctctagcca
     3121 aggcacagtc tcaaccgtgc ctaaagaagt tttggactcc tggactggcg ctttcaacac
     3181 gcgcaggcag cctctcttcg ctcacattcg taggcgaggg gagtcacggg tgtaatgtga
     3241 aaagacaaaa ttgattatct ttccctttct ttagtgtctt tt
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