Typing tool
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Typing tool
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Complete norovirus genomes
| EU366113 | GII.4 Den Haag | |
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| GII.P4 Den Haag |
ORF1: 1..826
ORF2: 807..2429
ORF3: 2429..3235
LOCUS EU366113 3282 bp RNA linear VRL 26-JUL-2016
DEFINITION Norovirus Hu/Duan/Beijing/2006/China non-structural polyprotein
gene, partial cds; and capsid protein VP1 and minor structural
protein VP2 genes, complete cds.
ACCESSION EU366113
VERSION EU366113.1
KEYWORDS .
SOURCE Norovirus Hu/Duan/Beijing/2006/China
ORGANISM Norovirus Hu/Duan/Beijing/2006/China
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3282)
AUTHORS Wu,S., Li,Y. and Lin,X.
TITLE Amplification of an isolate strain of Norovirus by 3' RACE method
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3282)
AUTHORS Wu,S., Li,Y. and Lin,X.
TITLE Direct Submission
JOURNAL Submitted (25-DEC-2007) Institute of Animal and Plant Quarantine,
Chinese Academy of Inspection and Quarantine, Huixinli Bldg. No.
241, Huixinxijie, Chaoyang District, Beijing 100029, China
FEATURES Location/Qualifiers
source 1..3282
/organism="Norovirus Hu/Duan/Beijing/2006/China"
/mol_type="genomic RNA"
/strain="Norovirus Hu/Duan/Beijing/2006/China"
/host="Homo sapiens"
/db_xref="taxon:493779"
/geo_loc_name="China"
/collection_date="2006"
CDS <1..826
/note="ORF1"
/codon_start=2
/product="non-structural polyprotein"
/protein_id="ABY65349.1"
/translation="YHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLL
SPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLF
SFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVT
RDPAGWFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAALHGPTF
YSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 807..2429
/note="ORF2"
/codon_start=1
/product="capsid protein VP1"
/protein_id="ABY65350.1"
/translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQSSTDTENDFETHQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPTFPGEQLLFFRSTVPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2429..3235
/note="ORF3"
/codon_start=1
/product="minor structural protein VP2"
/protein_id="ABY65351.1"
/translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRTPTPARGSPSTSS
NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
polyA_site 3282
ORIGIN
1 ataccactat gatgcagatt actctcggtg ggattcaaca caacagagag ccgtgctggc
61 agctgctcta gaaatcatgg ttaaattctc ctcagaacca catttggctc aggtagtagc
121 agaagacctt ctttctccta gcgtggtgga tgtgggtgac ttcacaatat caatcaacga
181 gggtcttccc tctggggtgc cctgcacctc ccaatggaac tccatcgccc actggcttct
241 cactctctgt gcactctccg aagttacaaa tttgtcccca gacatcatac aggctaattc
301 tctcttctcc ttctatggtg atgatgaaat tgttagtaca gacataaaat tagacccaga
361 gaagttgaca gcaaagctta aggaatacgg gttgaaacca acccgccctg ataaaactga
421 aggacctctt gttatttctg aagacttaga tggtttgact ttcctgcgga gaactgtgac
481 ccgcgaccca gctggttggt ttggaaaact ggagcagagc tcaatactca ggcaaatgta
541 ctggactagg ggccccaacc atgaagatcc atctgaatca atgattccac actctcaaag
601 acccatacaa ttgatgtcct tactgggaga ggccgcactc cacggcccaa cattctacag
661 taaaatcagc aaattagtca ttgcagagct aaaagaaggt ggtatggatt tttacgtgcc
721 caggcaagag ccaatgttca gatggatgag attctcagat ctgagcacgt gggagggcga
781 tcgcaatctg gctcccagtt ttgtgaatga agatggcgtc gaatgacgcc aacccatctg
841 atgggtccgc agccaacctc gtcccagagg tcaacaatga ggttatggct ttggagcccg
901 ttgtcggtgc cgctattgcg gcgcctgtag cgggccaaca aaatgtaatt gacccctgga
961 ttagaaataa ttttgtacaa gcccctggtg gagagttcac agtatcccct agaaacgctc
1021 caggtgaaat actatggagc gcgcccttag gccctgatct gaatccctac ctatctcatt
1081 tggccagaat gtataatggt tatgcaggtg gttttgaagt gcaggtgatc ctcgcgggga
1141 acgcgttcac cgccggaaaa attatatttg cagcagtccc accaaatttt ccaactgaag
1201 gcttgagtcc cagccaggtc actatgttcc cccacataat agtggatgtt aggcaattgg
1261 aacctgtgtt gatcccctta cctgatgtta ggaataactt ctatcattat aatcagtcaa
1321 atgattctac cattaaattg atagcaatgc tgtatacacc acttagggct aataatgctg
1381 gggaagatgt cttcacagtc tcttgtcgag ttctcacgag gccatcccct gattttgatt
1441 ttatattttt ggtgccacct acagttgagt caagaactaa accatttact gtcccaatct
1501 taactgttga agaaatgacc aattcaagat tccccattcc tttggaaaaa ttgttcacgg
1561 gtcccagcag tgcctttgtt gttcaaccac aaaatggcag atgcacgact gatggcgtgc
1621 tcttaggcac cacccaactg tctcctgtca acatctgcac cttcagaggg gatgtcaccc
1681 acattgcagg ttctcgtaat tacacaatga atttggcttc tctaaattgg aacaattatg
1741 acccaacaga agaaattcca gcccctctag gaactccaga tttcgtggga aagatccaag
1801 gtgtgctcac tcaaaccaca aagggagatg gttcgacccg tggccataaa gctacagttt
1861 acactgggag tgcccccttt actccaaagc tgggcagtgt tcaatccagt actgatacag
1921 aaaatgattt tgaaactcac caaaacacaa aattcacccc agtcggtgtc atccaggatg
1981 gtagcaccac ccaccgaaat gaaccccaac aatgggtgct cccaagttat tcaggtagaa
2041 atgtccataa tgtacaccta gcccctgctg tagcccccac ttttcccggt gaacaacttc
2101 ttttctttag gtccactgtg cccggatgca gcgggtatcc caacatggat ttggattgcc
2161 tactccccca ggagtgggtg cagcacttct accaagaggc agctccagca caatctgatg
2221 tggctctatt gagatttgtg aatccagaca cgggtagggt cctgtttgag tgcaaacttc
2281 ataaatcagg ctatgttaca gtggctcaca ccggccagca tgatttggtc atccccccca
2341 atggttattt taggtttgat tcctgggtta atcaattcta cacacttgcc cccatgggaa
2401 atgggacggg gcgtagacgt gctttataat ggctggagct ttctttgctg gattggcatc
2461 tgatgtcctt agctctggac ttggttccct aatcaatgct ggggctgggg ctatcaacca
2521 aaagattgat tttgaaaata acagaaaatt gcagcaagct tccttccagt ttagcagtaa
2581 tctacaacag gcttcctttc aacatgataa agagatgctc caagcacaaa ttgaggccac
2641 taaaaagttg caacaggaaa tgatgaaagt caaacaggca atgctcttag aaggtggatt
2701 ctctgaaaca gatgcagccc gtggggcaat caacgcccct atgacaaagg ctttggactg
2761 gagcggaaca aggtactggg cccctgatgc taggactaca acatacaatg caggccgttt
2821 ttccacccct caaccttcgg gggcactgcc aggaagaatc aatcccagga ctcctacccc
2881 cgctcggggc tcccccagca catcttctaa tgcttctact gctacttcta tatattcaaa
2941 tcaaactgtt tcaacgagac ttggttctac agctggttct ggcaccaatg tctcgagtct
3001 cccgtcaact gcaaggacta ggagttgggt tgaggatcaa aacagaaatt tgtcaccttt
3061 catgaggggg gctcacaaca tatcgtttgt caccccacca tctagcagat cctctagcca
3121 aggcacagtc tcaaccgtgc ctaaagaagt tttggactcc tggactggcg ctttcaacac
3181 gcgcaggcag cctctcttcg ctcacattcg taggcgaggg gagtcacggg tgtaatgtga
3241 aaagacaaaa ttgattatct ttccctttct ttagtgtctt tt
//