Typing tool
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Typing tool
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Complete norovirus genomes
| EU310927 | GII.4 Yerseke | |
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| GII.P4 US95 |
ORF1: 5..5104
ORF2: 5085..6707
ORF3: 6707..7513
LOCUS EU310927 7559 bp RNA linear VRL 24-DEC-2007
DEFINITION Norovirus Hu/Houston/TCH186/2002/US, complete genome.
ACCESSION EU310927
VERSION EU310927.1
KEYWORDS .
SOURCE Norovirus Hu/Houston/TCH186/2002/US
ORGANISM Norovirus Hu/Houston/TCH186/2002/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7559)
AUTHORS Larsson,M.M., Rydell,G.E., Grahn,A., Rodriguez-Diaz,J.,
Akerlind,B., Hutson,A.M., Estes,M.K., Larson,G. and Svensson,L.
TITLE Antibody prevalence and titer to norovirus (genogroup II) correlate
with secretor (FUT2) but not with ABO phenotype or Lewis (FUT3)
genotype
JOURNAL J. Infect. Dis. 194 (10), 1422-1427 (2006)
PUBMED 17054072
REFERENCE 2 (bases 1 to 7559)
AUTHORS Hutson,A.M., Chandrasekaran,A., Neill,F.H., Estes,M.K. and
Atmar,R.L.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2007) Molecular Virology & Microbiology, Baylor
College of Medicine, 1 Baylor Plaza, Houston, TX 77030, USA
FEATURES Location/Qualifiers
source 1..7559
/organism="Norovirus Hu/Houston/TCH186/2002/US"
/mol_type="genomic RNA"
/strain="Hu/Houston/TCH186/2002/US"
/host="Homo sapiens"
/db_xref="taxon:489822"
/country="USA"
/note="genotype: GII.4"
5'UTR 1..4
CDS 5..5104
/note="ORF1; encodes non-structural proteins"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="ABY27559.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEIVVSYSVKDGVSGLPELSTVRQPE
EANTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM
PELKQALKNISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSASVQTNNELTGALHHLR
CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEEATNKDGC
PKPRDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTKKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYRYHYDADYSRWD
STQQRAVLAAALEVMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSHFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6707
/note="major capsid protein; ORF2"
/codon_start=1
/product="VP1"
/protein_id="ABY27560.1"
/translation="MKMASSDASPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGTHDYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRGDGSTRGHKATVSTGSVHFTPKLGSVQFTTDTNNDLETGQNTKFTPVGVVQDG
NSAHQNEPQQWVLPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVLHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGPHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
CDS 6707..7513
/note="minor capsid protein; ORF3"
/codon_start=1
/product="VP2"
/protein_id="ABY27561.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMEVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRAPAPAQGSSSTPS
STSTATSVYSNQTVSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
3'UTR 7514..7559
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcctaaac agcccccccc gagggaaata ccacaaagac ccccacgacc
181 acctactcca gaactggtca aaaagatccc ccctcccccg cctaacggag aggatgagat
241 agtggtttct tatagtgtca aagatggtgt ttccggtttg cctgagcttt ccaccgtcag
301 gcaaccggaa gaagctaata cggccttcag tgtcccccca ctcaatcaga gggagaatag
361 agatgctaag gagccactga ctggaacaat tctggaaatg tgggatggag aaatctacca
421 ttatggcctg tatgtggagc gaggtcttgt actaggtgtg cacaagccac cagctgccat
481 tagcctcgcc aaggtcgaac taacaccact ctccttgttc tggagacctg tgtatactcc
541 tcagtacctc atctctccag acactctcaa gaaattacat ggagaaacgt ttccctacac
601 agcctttgac aacaattgct atgccttttg ttgctgggtc ctggacctaa acgactcgtg
661 gctgagtagg agaatgatcc agagaacaac tggcttcttc agaccctacc aagattggaa
721 taggaaaccc ctccccacta tggatgattc caaattaaag aaggtagcta acatattcct
781 gtgtgccctg tcttcgctat tcaccaggcc cataaaagac ataataggga agctaaggcc
841 tcttaacatc ctcaacatct tggcttcatg tgattggact ttcgcaggca tagtggagtc
901 cttgatactc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gattgccccc ttactcggtg attacgagtt gcaaggacct gaagaccttg cagtggagct
1021 cgtccctgta gtgatggggg gaattggtct ggtgctggga ttcaccaaag agaagattgg
1081 aaaaatgttg tcatctgctg catccacctt gagggcttgt aaagatcttg gtgcatatgg
1141 gctagagatc ctaaagttgg tcatgaagtg gttcttcccg aagaaagagg aagcaaatga
1201 actggctatg gtgagatcca tcgaggatgc agtgttggac ctcgaggcaa tcgaaaacaa
1261 ccatatgacc accttgctca aggacaaaga tagtctggca acctacatga gaacccttga
1321 cctcgaggaa gagaaagcca gaaaactctc aaccaagtct gcttcacctg acatcgtggg
1381 cacaatcaac gcccttttgg cgagaatcgc tgctgcacgt tccctggtgc atcgagcgaa
1441 ggaggaactt tccagcagac caagacctgt agtcttaatg atatcaggca gaccaggaat
1501 agggaagacc caccttgcta gggaagtggc taagagaatc gcagcctccc tcacaggaga
1561 ccagcgtgta ggcctcgtcc cacgcaatgg cgtcgatcac tgggatgcgt acaaggggga
1621 gagggtcgtc ctatgggacg actatggaat gagcaatccc atccacgacg ccctcaggtt
1681 gcaagaactc gctgacactt gccccctcac tctaaactgt gacaggattg agaataaagg
1741 aaaggttttt gacagcgatg tcatcattat cactactaat ctagctaacc cagcaccact
1801 ggactatgtc aactttgaag catgctcgag gcgtatcgat ttcctcgtgt atgcagaagc
1861 ccctgaagtc gaaaaggcga agcgtgactt cccaggccaa cctgacatgt ggaagaacgc
1921 ttttagttct gatttctcac acataaaact gacactggct ccacagggtg gctttgataa
1981 gaacgggaac accccacacg ggaagggcgt catgaagact ctcactaccg gctcccttat
2041 tgcccgggca tcagggctac tccatgagag gctagatgaa tttgaactac agggcccaac
2101 tctcaccacc ttcaactttg atcgcaacaa agtgcttgcc tttaggcagc ttgctgctga
2161 aaacaaatat gggttgatgg acacaatgaa agttgggagg cagctcaagg atgtcagaac
2221 catgccagaa cttaaacaag cactcaagaa tatctcaatc aagaagtgcc agatagtgta
2281 cagtggttgc acctacacac ttgagtctga tggcaagggc aatgtgaaag ttgacagagt
2341 tcagagcgcc tccgtgcaga ccaacaatga gctgactggc gccctgcacc acctaaggtg
2401 cgccagaatc aggtactatg tcaggtgtgt tcaggaggcc ctgtattcca tcatccagat
2461 tgctggggcc gcatttgtca ccacgcgcat cgtcaagcgt atgaacatac aagacctatg
2521 gtccaagcca caagtggaaa acacagagga ggctaccaac aaggacgggt gcccaaaacc
2581 cagagatgat gaggagttcg tcatttcgtc cgacgacatt aaaactgagg gtaagaaagg
2641 gaagaacaag accggccgtg gcaagaaaca cacagccttc tcaagcaaag gtctcagtga
2701 tgaggagtac gatgagtaca agaggattag agaagaaagg aatggcaagt actccataga
2761 agagtacctt caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgaccga
2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttca ggccaacaaa
2881 gaaacaacgc aaggaagaaa gagcttctct cggtttggtc acaggttctg aaattaggaa
2941 aagaaaccca gatgatttca agcccaaggg gaaactgtgg gctgacgatg acagaagtgt
3001 ggactacaat gagaaactca gttttgaggc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggttca ggttggggct tctgggtctc ccccagtctg ttcataacat caacccacgt
3121 cataccccag ggcgcaaagg aattctttgg agtccccatc aaacaaattc aggtacacaa
3181 gtcaggcgaa ttctgtcgct tgagattccc gaaaccaatc aggactgatg tgacgggcat
3241 gatcttagaa gaaggtgcgc ccgaaggcac cgtggtcaca ctactcatca aaaggtctac
3301 tggagaactc atgcccctag cagctagaat ggggacccat gcaaccatga aaattcaagg
3361 gcgcactgtt ggaggtcaaa tgggcatgct tctgacagga tccaatgcca aaagcatgga
3421 tctaggcacc acaccaggtg attgcggctg tccctacatc tacaagagag gaaatgacta
3481 tgtggtcatt ggagtccaca cggctgccgc tcgtggggga aacactgtca tatgtgccac
3541 tcaggggagt gagggggagg ctacacttga aggtggtgac agtaagggaa catattgtgg
3601 tgcgccaatc ctaggcccag ggagtgcccc aaaacttagc accaaaacca aattctggag
3661 atcgtccaca gcaccactcc cacctggcac ctatgaacca gcctatcttg gtggcaagga
3721 ccccagagtc aagggtggcc cttcgttgca gcaagtcatg agggatcagc tgaaaccatt
3781 tacagagccc aggggtaagc caccaaagcc aagtgtgtta gaagctgcca agaaaaccat
3841 catcaatgtc cttgaacaaa caattgaccc acctgagaaa tggtcgttcg cacaagcttg
3901 cgcgtccctc gacaagacca cttctagtgg ccatccgcac cacatgcgga aaaacgactg
3961 ctggaacggg gaatccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat
4021 gttcgaagaa gggaagaaca tgaccccagt ctacacaggt gcgcttaagg atgaattagt
4081 caaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggtt cggatttagc
4141 gaccatgatc cggtgtgctc gagcattcgg aggcctaatg gatgaactca aagcacactg
4201 tgttacactt cctatcagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga
4261 gaggcattcc aggtacagat accactatga tgctgattac tctcggtggg attcaacaca
4321 acagagagcc gtgttggcag ctgctctaga agtcatggtt aaattctcct cagaaccaca
4381 tttggctcag gtagtcgcag aagaccttct ttctcctagc gtggtggatg tgggtgactt
4441 cacaatatcg atcaacgagg gtcttccctc tggggtgccc tgcacctccc aatggaactc
4501 catcgcccac tggcttctca ctctctgtgc gctctctgaa gttacaaatt tgtcccctga
4561 catcatacag gctaattccc acttctcctt ttatggtgat gacgaaattg ttagtacaga
4621 cataaaatta gacccagaga agttgacagc aaaacttaag gaatatggat tgaaaccaac
4681 ccgccctgat aagactgaag gacctcttgt tatctctgaa gacttaaatg gtctgacttt
4741 cctgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagctc
4801 aatactcagg caaatgtact ggactagagg ccccaaccat gaagacccat ctgaaacaat
4861 gattccacac tcccaaagac ccatacaatt gatgtcccta ctgggagagg ccgcactcca
4921 cggcccaaca ttctacagca aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg
4981 tatggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagcttt gtgaatgaag atggcgtcga
5101 gtgacgccag cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggcttt ggagcccgtt gttggtgccg caattgcggc acctgtagcg ggccaacaaa
5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagttcacag
5281 tatcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttgggc cctgatctga
5341 atccctacct ttctcatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc
5401 aggtaattct cgcggggaac gcgttcaccg ccgggaaaat catatttgca gcagtcccac
5461 caaatttccc aactgaaggc ttgagcccca gccaggtcac tatgttcccc catataatag
5521 tagatgttag gcaactggaa cctgtgttga ttcccttacc tgatgtcagg aataatttct
5581 atcactataa tcagtcaaat gaccccacca ttaaactgat agcaatgctg tacacaccac
5641 ttagggctaa taatgctggg gatgatgtct tcacagtctc ttgccgagtc ctcacgaggc
5701 catcccctga ttttgatttt atatttttgg tgccacccac agttgagtca agaaccaaac
5761 cattcaccgt cccaatttta actgttgagg agatgaccaa ttcaagattc cccattcctt
5821 tggaaaagtt gttcacgggt cccagcggtg cctttgttgt tcaaccacaa aatggcagat
5881 gcacgactga tggcgtgctc ttaggtacta cccaactgtc tcctgttaac atctgcactt
5941 tcagagggga tgtcacccac attgcaggca ctcatgatta tacaatgaat ttggcttctc
6001 aaaattggaa caattacgac ccaacagaag aaatcccagc ccctctggga actccagatt
6061 tcgtgggaaa gatccaaggc gtgctcactc aaaccacaag gggagatggc tcgacccgtg
6121 gccacaaagc cacagtgagc actgggagtg tccactttac tccaaagctg ggcagtgttc
6181 aattcaccac tgacacaaac aatgatcttg aaactggcca aaacacgaaa ttcaccccag
6241 tcggtgtcgt ccaggatggt aatagtgccc accaaaatga accccaacaa tgggtgctcc
6301 caaattactc aggtagaact ggccataatg tacacctagc ccctgccgta gcccccactt
6361 ttccgggtga gcaacttctc ttcttcaggt ccactatgcc cggatgcagc gggtatccca
6421 acatgaattt ggattgccta ctcccccagg aatgggtgct gcacttctac caagaggcag
6481 ctccagcaca atctgatgtg gctctgctga gatttgtgaa tccagacaca ggtagggtcc
6541 tgtttgagtg caaacttcat aaatcaggct atgtcacagt ggctcacact ggcccgcatg
6601 atttggtcat cccccccaat ggctacttca gatttgattc ctgggttaac caattctaca
6661 cgcttgcccc catgggaaat ggagcggggc gtagacgtgc gttataatgg ctggagcttt
6721 ctttgctgga ttggcatctg atgtccttgg ctctggactt ggttccctaa tcaatgctgg
6781 ggctggggcc atcaaccaaa aagttgaatt tgaaaataac agaaaattgc aacaagcttc
6841 ctttcaattt agcagcaatc tacaacaggc ttcctttcaa catgataaag agatgctcca
6901 agcacaaatt gaggccacta aaaagttgca acagggtatg atggaagtta aacaggcaat
6961 gctcttagag ggtggattct ctgaaacaga tgcagcccgt ggggcaatca acgcccccat
7021 gacaaaggct ttggattgga gcggaacaag gtactgggct cctgatgcta ggactacaac
7081 atacaatgca ggccgctttt ccacccctca accttcgggg gcactgccag gaagaattaa
7141 tcccagggct cctgcccccg ctcagggctc ctccagcaca ccctctagta cttctactgc
7201 tacttctgtg tattcaaatc aaactgtttc aacgagactt ggttctacag ctggttctgg
7261 caccagtgtc tcgagtctcc cgtcaactgc aaggactagg agctgggttg aggatcaaaa
7321 caggaatttg tcacctttca tgaggggggc tcacaacata tcgttcgtca ccccaccatc
7381 tagtagatct tctagccaag gcacagtctc aaccgtgcct aaagaaattt tggactcctg
7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga
7501 gtcacgggtg taatgtgaaa agacaaaatt gattatcttt cttttcttta gtgtctttt
//