Typing tool
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Complete norovirus genomes
EU085526 | GI.1 | ||
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GI.P1 |
ORF1: 1..869 ORF2: 853..2445 ORF3: 2445..3081LOCUS EU085526 3081 bp ss-RNA linear VRL 11-MAR-2015 DEFINITION Norovirus Hu/GI.1/P725.Delsjo2004/Gothenburg/Sweden RdRp (pol) gene, partial cds; capsid protein (VP1) gene, complete cds; and minor capsid protein (VP2) gene, partial cds. ACCESSION EU085526 VERSION EU085526.1 KEYWORDS . SOURCE Norovirus Hu/GI.1/P725.Delsjo2004/Gothenburg/Sweden ORGANISM Norovirus Hu/GI.1/P725.Delsjo2004/Gothenburg/Sweden Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3081) AUTHORS Nenonen,N.P., Hannoun,C., Horal,P., Hernroth,B. and Bergstrom,T. TITLE Tracing of norovirus outbreak strains in mussels collected near sewage effluents JOURNAL Appl. Environ. Microbiol. 74 (8), 2544-2549 (2008) PUBMED 18310420 REFERENCE 2 (bases 1 to 3081) AUTHORS Nenonen,N.P., Hannoun,C., Horal,P., Hernroth,B. and Bergstrom,T. TITLE Direct Submission JOURNAL Submitted (07-AUG-2007) Infectious Disease, Goteborg University, Guldhedsgatan 10 B, Goteberg 413 46, Sweden FEATURES Location/Qualifiers source 1..3081 /organism="Norovirus Hu/GI.1/P725.Delsjo2004/Gothenburg/Sweden" /mol_type="genomic RNA" /strain="Hu/GI.1/P725.Delsjo2004/Gothenburg/Sweden" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:479199" /country="Sweden" /note="subgroup: GI.1" gene <1..869 /gene="pol" CDS <1..869 /gene="pol" /codon_start=3 /product="RdRp" /protein_id="AJT43260.1" /translation="IEDGPLIYAEHAKYKNHFDADYTAWDSTQNRQIMTESFSIMSRL TASPELAEVVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWIITLCALSE ATGLSPDVVQSMSYFSFYGDDEIVSTDIDFDPTRLTQILKEYGLKPTRPDKTEGPIQV RKNVDGLVFLRRTISRDAAGFQGRLDRASIERQIFWTRGPNHSDPSETLVPHTQRKVQ LISLLGEASLHGEKFYRKISSKVIHEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDR NLLPEFVNDDGV" gene 853..2445 /gene="VP1" CDS 853..2445 /gene="VP1" /note="ORF2" /codon_start=1 /product="capsid protein" /protein_id="ABW74126.1" /translation="MMMASKDATSSVDGASGAGQLVPEVNASDPLAMDPVAGSSTAVA TAGQVNPIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLSLGPHLNPFLLHLSQMYNG WVGNMRVRIMLAGNAFTAGKIIVSCIPPGFGSHNLTIAQATLFPHVIADVRTLDPIEV PLEDVRNVLFHNNDRNQQTMRLVCMLYTPLRTGGGTGDSFVVAGRVMTCPSPDFNFLF LVPPTVEQKTRPFTLPNLPLSSLSNSRAPLPISGMGISPDNVQSVQFQNGRCTLDGRL VGTTPVSLSHVAKIRGTSNGTVINLTELDGTPFHPFEGPAPIGFPDLGGCDWHINMTQ FGHSSQTQYDVDTTPDTFVPHLGSIQANGINSGNYIGVLSWVSPPSHPSGSQVDLWKI PNYGSSITEATHLAPSVFPPGFGEVLVFFMSKIPGPGAYSLPCLLPQEYISHLASEQA PTVGEAALLHYVDPDTGRNLGEFKAYPDGFLTCVPNGASSGPQQLPINGVFVFVSWVS RFYQLKPVGTASTARGRLGLRR" gene 2445..>3081 /gene="VP2" CDS 2445..>3081 /gene="VP2" /codon_start=1 /product="minor capsid protein" /protein_id="AJT43261.1" /translation="MAQAIIGAIAASTAGSALGAGIQVGGEAALQSQRYQQNLQLQEN SFKHDKEMIGYQVEASNQLLAKNLATRYSLLRAGGLTSADAARFVAGAPVTRVVDWNG VRVSAPETPATTLRSGGFMSVPMPYTIKQKQAQPSGISNPNYAPSTVSRTTSWVESQN SLRFGNLPPYHTEALNTVWLTPPGSTASSTLSSVPRGYFNTDRLPLFANNRR" ORIGIN 1 caatagagga tggcccttta atttatgctg aacatgccaa gtacaagaat cattttgatg 61 cagattacac agcatgggac tctacacaaa atagacaaat tatgacagag tccttctcca 121 tcatgtcacg ccttacggcc tctccagaac tagctgaggt tgtagcccag gatttattag 181 caccatccga gatggatgtg ggcgactatg ttataagggt caaagaaggc ctaccatcag 241 gatttccctg cacttcccaa gtgaatagca taaatcactg gataatcacc ctctgtgcat 301 tgtctgaagc tactggctta tcacctgatg tggtacagtc catgtcatac ttctcattct 361 acggtgatga tgagatcgtg tcaactgaca tagactttga cccaactcgc ctcacccaaa 421 ttctcaagga atacggcctc aagccaacga ggccagacaa aacagaaggg ccaatacagg 481 tgaggaagaa tgtggatggg ctagttttcc tgcggcgcac catctctcgg gacgcagcag 541 ggttccaggg tagactggat agagcctcaa ttgaacgtca gattttctgg acccgcgggc 601 ccaaccattc agacccatca gagactctgg taccacacac ccagaggaaa gtccaactga 661 tctcactcct gggagaagcc tcactccatg gtgaaaaatt ttacaggaaa atatctagca 721 aagtcataca tgaaattaag actggagggc tggagatgta tgtcccaggg tggcaggcca 781 tgttccgctg gatgcgcttc catgacctcg gattatggac aggagatcgc aatctcctgc 841 ccgaattcgt aaatgatgat ggcgtctaag gacgctacgt caagcgtgga tggcgccagt 901 ggcgctggtc agttggtacc ggaggttaat gcttctgacc ctcttgcaat ggatcctgta 961 gcgggctctt caacagcagt tgcaactgct gggcaagtta accctattga cccttggata 1021 atcaataact ttgtgcaggc tccccaaggt gaatttacta tttctccaaa taataccccc 1081 ggtgatgttt tgtttgattt gagtttaggc cctcatctta atcccttctt gctacatttg 1141 tcacaaatgt ataatggctg ggttggcaat atgagagtta ggattatgct ggctggtaat 1201 gcatttactg caggtaaaat tatagtttct tgcatacctc ctggctttgg ttcccataac 1261 cttactatag cacaagcaac tcttttccca catgtgattg ctgatgttag gactttagat 1321 ccaattgaag tacccttaga agatgtaagg aatgttctct ttcataataa tgacagaaat 1381 caacaaacaa tgcgccttgt gtgcatgctt tacacccccc tccgcactgg tggcggtaca 1441 ggtgattctt ttgtggttgc agggcgagtt atgacttgtc ctagccccga ttttaatttc 1501 ttatttttgg ttcctcccac agtggaacag aagaccaggc cttttactct cccaaattta 1561 ccgctgagtt ctttgtcaaa ttcacgtgct cctcttccaa ttagtggcat gggtatttct 1621 ccagataatg ttcagagtgt gcagttccaa aatggccggt gtaccttaga tgggcgactt 1681 gttggcacca ccccagtctc cctctcccat gttgctaaga taaggggtac ttctaatggc 1741 actgtgatca atctcaccga attggatggc acccccttcc acccttttga aggccctgcc 1801 cctattggtt tcccagatct tggtggctgt gattggcata ttaacatgac acaatttgga 1861 cattctagcc agactcagta tgatgtggat accacccccg acaccttcgt cccccactta 1921 ggttcaatcc aggcgaatgg catcaatagt ggcaactaca ttggtgttct tagctgggtc 1981 tcccccccat cacacccatc tggctctcaa gttgatcttt ggaagatccc caactatggg 2041 tctagcatca cagaggcaac ccatctagct ccctctgtct ttcctcctgg ttttggagag 2101 gtactagtct ttttcatgtc aaagatacca ggtcctggtg cttatagtct accctgttta 2161 ctgccacaag aatatatttc acacctcgca agtgaacaag cccccactgt tggtgaggcc 2221 gccctgctcc actatgttga ccctgataca ggccggaatc ttggggagtt taaggcttac 2281 cctgatggtt tcctaacctg tgtccctaat ggggccagct cgggcccaca acaactgcca 2341 atcaatggag tctttgtctt tgtttcatgg gtgtccagat tttatcagtt aaagcctgtg 2401 ggaactgcca gcacggcaag aggtaggctt ggtttgcgcc gataatggct caggctataa 2461 ttggtgcaat tgccgcctcc acagcaggca gtgctttggg ggcaggtata caggttggtg 2521 gtgaggcggc ccttcagagt cagagatatc aacaaaatct gcaattacaa gaaaactctt 2581 tcaagcatga taaggagatg attggttatc aagttgaggc ttcaaatcag ttgctggcaa 2641 agaatttggc caccaggtac tcacttctcc gcgctggggg tctgaccagt gctgatgcgg 2701 caaggtttgt tgcgggggcc ccggtcactc gcgttgtgga ctggaatggt gtgagagtgt 2761 ctgcccctga gactcctgcg accacactga gatctggcgg cttcatgtct gtacctatgc 2821 catacactat caaacaaaag caggctcaac catctggtat tagcaatcca aattatgccc 2881 cctctactgt ttctcgtact actagttggg ttgaatcaca gaattcatta agatttggta 2941 atttaccccc ctaccacaca gaggctctta atactgtgtg gttgactcca cctggttcaa 3001 ctgcttcttc cacgttgtct tctgtgccac gtggttattt caatacagat aggttgccat 3061 tgttcgcaaa caataggcga t //