Typing tool
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Typing tool
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Complete norovirus genomes
| EU085523 | GI.1 | |
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| GI.P1 |
ORF1: 1..869
ORF2: 853..2445
ORF3: 2445..3081
LOCUS EU085523 3081 bp ss-RNA linear VRL 11-MAR-2015
DEFINITION Norovirus Hu/GI.1/Mussels/M127nov2004/Foto/Sweden RdRp (pol) gene,
partial cds; capsid protein (VP1) gene, complete cds; and minor
capsid protein (VP2) gene, partial cds.
ACCESSION EU085523
VERSION EU085523.1
KEYWORDS .
SOURCE Norovirus Hu/GI.1/Mussels/M127nov2004/Foto/Sweden
ORGANISM Norovirus Hu/GI.1/Mussels/M127nov2004/Foto/Sweden
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3081)
AUTHORS Nenonen,N.P., Hannoun,C., Horal,P., Hernroth,B. and Bergstrom,T.
TITLE Tracing of norovirus outbreak strains in mussels collected near
sewage effluents
JOURNAL Appl. Environ. Microbiol. 74 (8), 2544-2549 (2008)
PUBMED 18310420
REFERENCE 2 (bases 1 to 3081)
AUTHORS Nenonen,N.P., Hannoun,C., Horal,P., Hernroth,B. and Bergstrom,T.
TITLE Direct Submission
JOURNAL Submitted (07-AUG-2007) Infectious Disease, Goteborg University,
Guldhedsgatan 10 B, Goteberg 413 46, Sweden
FEATURES Location/Qualifiers
source 1..3081
/organism="Norovirus
Hu/GI.1/Mussels/M127nov2004/Foto/Sweden"
/mol_type="genomic RNA"
/strain="Hu/GI.1/Mussels/M127nov2004/Foto/Sweden"
/isolation_source="digestive gland"
/host="mussel"
/db_xref="taxon:479189"
/country="Sweden"
/note="subgroup: GI.1"
gene <1..869
/gene="pol"
CDS <1..869
/gene="pol"
/codon_start=3
/product="RdRp"
/protein_id="AJT43254.1"
/translation="IEDGPLIYAEHAKYKNHFDADYTAWDSTQNRQIMTESFSIMSRL
TASPELAEVVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWIITLCALSE
ATGLSPDVVQSMSYFSFYGDDEIVSTDIDFDPTRLTQILKEYGLKPTRPDKTEGPIQV
RKNVDGLVFLRRTISRDAAGFQGRLDRASIERQIFWTRGPNHSDPSETLVPHTQRKVQ
LISLLGEASLHGEKFYRKISSKVIHEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDR
NLLPEFVNDDGV"
gene 853..2445
/gene="VP1"
CDS 853..2445
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="ABW74125.1"
/translation="MMMASKDATSSVDGASGAGQLVPEVNASDPLAMDPVAGSSTAVA
TAGQVNPIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLSLGPHLNPFLLHLSQMYNG
WVGNMRVRIMLAGNAFTAGKIIVSCIPPGFGSHNLTIAQATLFPHVIADVRTLDPIEV
PLEDVRNVLFHNNDRNQQTMRLVCMLYTPLRTGGGTGDSFVVAGRVMTCPSPDFNFLF
LVPPTVEQKTRPFTLPNLPLSSLSNSRAPLPISGMGISPDNVQSVQFQNGRCTLDGRL
VGTTPVSLSHVAKIRGTSNGTVINLTELDGTPFHPFEGPAPIGFPDLGGCDWHINMTQ
FGHSSQTQYDVDTTPDTFVPHLGSIQANGINSGNYIGVLSWVSPPSHPSGSQVDLWKI
PNYGSSITEATHLAPSVFPPGFGEVLVFFMSKIPGPGAYSLPCLLPQEYISHLASEQA
PTVGEAALLHYVDPDTGRNLGEFKAYPDGFLTCVPNGASSGPQQLPINGVFVFVSWVS
RFYQLKPVGTASTARGRLGLRR"
gene 2445..>3081
/gene="VP2"
CDS 2445..>3081
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="AJT43255.1"
/translation="MAQAIIGAIAASTAGSALGAGIQVGGEAALQSQRYQQNLQLQEN
SFKHDKEMIGYQVEASNQLLAKNLATRYSLLRAGGLTSADAARFVAGAPVTRVVDWNG
VRVSAPETPATTLRSGGFMSVPMPYTIKQKQAQPSGISNPNYAPSTVSRTTSWVESQN
SLRFGNLPPYHTEALNTVWLTPPGSTASSTLSSVPRGYFNTDRLPLFANNRR"
ORIGIN
1 caatagagga tggcccttta atttatgctg aacatgccaa gtacaagaat cattttgatg
61 cagattacac agcatgggac tctacacaaa atagacaaat tatgacagag tccttctcca
121 tcatgtcacg ccttacggcc tctccagaac tagctgaggt tgtagcccag gatttattag
181 caccatccga gatggatgtg ggcgactatg ttataagggt caaagaaggc ctaccatcag
241 gatttccctg cacttcccaa gtgaatagca taaatcactg gataatcacc ctctgtgcat
301 tgtctgaagc tactggctta tcacctgatg tggtacagtc catgtcatac ttctcattct
361 acggtgatga tgagatcgtg tcaactgaca tagactttga cccaactcgc ctcacccaaa
421 ttctcaagga atacggcctc aagccaacga ggccagacaa aacagaaggg ccaatacagg
481 tgaggaagaa tgtggatggg ctagttttcc tgcggcgcac catctctcgg gacgcagcag
541 ggttccaggg tagactggat agagcctcaa ttgaacgtca gattttctgg acccgcgggc
601 ccaaccattc agacccatca gagactctgg taccacacac ccagaggaaa gtccaactga
661 tctcactcct gggagaagcc tcactccatg gtgaaaaatt ttacaggaaa atatctagca
721 aagtcataca tgaaattaag actggagggc tggagatgta tgtcccaggg tggcaggcca
781 tgttccgctg gatgcgcttc catgacctcg gattatggac aggagatcgc aatctcctgc
841 ccgaattcgt aaatgatgat ggcgtctaag gacgctacgt caagcgtgga tggcgccagt
901 ggcgctggtc agttggtacc ggaggttaat gcttctgacc ctcttgcaat ggatcctgta
961 gcgggctctt caacagcagt tgcaactgct gggcaagtta accctattga cccttggata
1021 atcaataact ttgtgcaggc tccccaaggt gaatttacta tttctccaaa taataccccc
1081 ggtgatgttt tgtttgattt gagtttaggc cctcatctta atcccttctt gctacatttg
1141 tcacaaatgt ataatggctg ggttggcaat atgagagtta ggattatgct ggctggtaat
1201 gcatttactg caggtaaaat tatagtttct tgcatacctc ctggctttgg ttcccataac
1261 cttactatag cacaagcaac tcttttccca catgtgattg ctgatgttag gactttagat
1321 ccaattgaag tacccttaga agatgtaagg aatgttctct ttcataataa tgacagaaat
1381 caacaaacaa tgcgccttgt gtgcatgctt tacacccccc tccgcactgg tggcggtaca
1441 ggtgattctt ttgtggttgc agggcgagtt atgacttgtc ctagccccga ttttaatttc
1501 ttatttttgg ttcctcccac agtggaacag aagaccaggc cttttactct cccaaattta
1561 ccgctgagtt ctttgtcaaa ttcacgtgct cctcttccaa ttagtggcat gggtatttct
1621 ccagataatg ttcagagtgt gcagttccaa aatggccggt gtaccttaga tgggcgactt
1681 gttggcacca ccccagtctc cctctcccat gttgctaaga taaggggtac ttctaatggc
1741 actgtgatca atctcaccga attggatggc acccccttcc acccttttga aggccctgcc
1801 cctattggtt tcccagatct tggtggctgt gattggcata ttaacatgac acaatttgga
1861 cattctagcc agactcagta tgatgtggat accacccccg acaccttcgt cccccactta
1921 ggttcaatcc aggcgaatgg catcaatagt ggcaactaca ttggtgttct tagctgggtc
1981 tcccccccat cacacccatc tggctctcaa gttgatcttt ggaagatccc caactatggg
2041 tctagcatca cagaggcaac ccatctagct ccctctgtct ttcctcctgg ttttggagag
2101 gtactagtct ttttcatgtc aaagatacca ggtcctggtg cttatagcct accctgttta
2161 ctgccacaag aatatatttc acacctcgca agtgaacaag cccccactgt tggtgaggcc
2221 gccctgctcc actatgttga ccctgataca ggccggaatc ttggggagtt taaggcttac
2281 cctgatggtt tcctaacctg tgtccctaat ggggccagct cgggcccaca acaactgcca
2341 atcaatggag tctttgtctt tgtttcatgg gtgtccagat tttatcagtt aaagcctgtg
2401 ggaactgcca gcacggcaag aggtaggctt ggtttgcgcc gataatggct caggctataa
2461 ttggtgcaat tgccgcctcc acagcaggca gtgctttggg ggcaggtata caggttggtg
2521 gtgaggcggc ccttcagagt cagagatatc aacaaaatct gcaattacaa gaaaactctt
2581 tcaagcatga taaggagatg attggttatc aagttgaggc ttcaaatcag ttgctggcaa
2641 agaatttggc caccaggtac tcacttctcc gcgctggggg tctgaccagt gctgatgcgg
2701 caaggtttgt tgcgggggcc ccggtcactc gcgttgtgga ctggaatggt gtgagagtgt
2761 ctgcccctga aactcctgcg accacactga gatctggcgg cttcatgtct gtacctatgc
2821 catacactat caaacaaaag caggctcaac catctggtat tagcaatcca aattatgccc
2881 cctctactgt ttctcgtact actagttggg ttgaatcaca gaattcatta agatttggca
2941 atttaccccc ctaccacaca gaggctctta atactgtgtg gttgactcca cctggttcaa
3001 ctgcttcttc cacgttgtct tctgtgccac gtggttattt caatacagat aggttgccat
3061 tgttcgcaaa caataggcga t
//