Typing tool
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Typing tool
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Complete norovirus genomes
| EU072249 | GII.1 | |
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| GII.P21 |
ORF1: 1..787
ORF2: 768..2375
ORF3: 2375..3154
LOCUS EU072249 3188 bp RNA linear VRL 26-JUL-2016
DEFINITION Norovirus Hu/CHN41808/LL04 RNA-dependent RNA polymerase gene,
partial cds; and capsid protein and minor structural protein genes,
complete cds.
ACCESSION EU072249
VERSION EU072249.2
KEYWORDS .
SOURCE Norovirus Hu/CHN41808/LL04
ORGANISM Norovirus Hu/CHN41808/LL04
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3188)
AUTHORS Jin,M., Li,H. and Duan,Z.
TITLE Molecular characterization of GIIb recombinants and a novel
genotype of Norovirus detected in China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3188)
AUTHORS Fang,Z., Xie,H., Lv,H. and Ye,X.
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2007) National Institute for Viral Disease
Control and Prevention, China CDC, Department of Viral Diarrhea,
100 Ying-Xin Street, Xuan-Wu District, Beijing 100052, China
REFERENCE 3 (bases 1 to 3188)
AUTHORS Jin,M., Li,H. and Duan,Z.
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2009) National Institute for Viral Disease
Control and Prevention, China CDC, Department of Viral Diarrhea,
100 Ying-Xin Street, Xuan-Wu District, Beijing 100052, China
REMARK Sequence update by submitter
COMMENT On Jul 15, 2009 this sequence version replaced EU072249.1.
FEATURES Location/Qualifiers
source 1..3188
/organism="Norovirus Hu/CHN41808/LL04"
/mol_type="genomic RNA"
/isolate="CHN41808/LL04"
/host="Homo sapiens"
/db_xref="taxon:462109"
/country="China"
/collection_date="2004"
CDS <1..787
/note="ORF1"
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="ABU51165.2"
/translation="QQRAVLAAAMEIMVKFSSDPHLAQAVAEDLLSPSVMDVGDFKIS
INEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDI
KLDPEKLTTKLKEYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQS
SILRQMYWTRGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVISELK
EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSSVNEDGVE"
CDS 768..2375
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="ACT52409.1"
/translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRMNFVQAPNGEFTVSPRNSPGEILLNLELGPELNPFLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAIPPHFPIENLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNSFFHYNQEPEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELSNSRFPAPIDELYTSPNEGLVVQPQNGRSTLDGELLGTT
QLVPSNICSLRGRTNAHLPDNQHRWNMQVTNPNGTPFDPTEDVPAPLGTPDFLANIYG
VTSQRNPNNTCRAHDGILATWSPKFTPKLGSVVLGTWEDRDFDINQPTRFTPVGLYDT
DHFNQWALPNYSGALTLNMNLAPSVAPLFPGEQLLFFRSHIPLKGGTSNGAIDCLLPQ
EWVQHFYQESAPSSTDVALIRYTNPDTGRVLFEAKLHRQGFITVSNSGSRPIVVPPNG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 2375..3154
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="ACT52410.1"
/translation="MAGAFIAGLAGDLLTNSVGSLVNAGANAINQKVDFENNKQLPQA
SFNHDKEMLQAQVQATKQLQADMIALRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRYWAPGATKTTTFSGGLTGSSHARTDLPRKAPATSASVPAPRSSSSSASTVSTRSTL
VSGSSNFPSSTKSSISVPSQSTSPSSRTSEWVRNQNRALEPYMKGALQTAYVTPPSSR
ASSNGTVSTVPKEVLDSWTSVFNTHRQPLFAHLRRRGESQV"
ORIGIN
1 acaacaaaga gcagtgctgg ctgcggcaat ggaaataatg gtcaaattct catcagatcc
61 tcatctggcc caagcagttg cagaagacct cttgtcccct agtgtgatgg atgtgggtga
121 tttcaagatt tcaatcaacg aggggttacc ctctggtgta ccttgcacct cacaatggaa
181 ctccattgcc cactggctcc tcacactatg tgcactgtct gaagtcacag acctgtcccc
241 tgacattatc caggcaaact ccctattttc cttttatggt gatgatgaaa tagtgagcac
301 agatatcaaa ttggacccag agaagttgac aacaaaattg aaggaatacg ggctaaaacc
361 aacccgtcct gataaaacag aaggaccctt aattatctct gaagatttgg acggcctgac
421 cttcttgcgg agaacggtga cccgtgatcc ggccgggtgg tttggcaaac tagaccaaag
481 ttcaatactc aggcagatgt actggaccag gggaccaaac catgaggacc cctttgaaac
541 aatgataccg cactcccaaa gacccataca actgatgtca ctactgggtg aagctgcatt
601 acatggccca gcattctaca gtaaaatcag caaattggtc atctcagaat tgaaagaggg
661 tggaatggat ttttacgtgc ccagacaaga accaatgttt aggtggatga gattctcaga
721 tttgagcacg tgggagggcg atcgcaatct ggctcccagt tccgtgaatg aagatggcgt
781 cgaatgacgc cgctccatct aatgatggtg cagccggtct cgtaccagag gtcaacaacg
841 agacgatggc actcgaaccg gtggctgggg cttccatagc cgcccctctg accggtcaaa
901 ataatgttat agacccctgg attagaatga attttgtcca agccccaaat ggtgaattta
961 cagtgtctcc ccgtaactct cctggtgaaa ttttgttaaa tttagaatta ggtcctgaac
1021 tgaatccatt cttagcacat ctttcaagga tgtacaatgg ttatgctggt ggagttgaag
1081 tgcaggtgct acttgccggg aacgcgttca cagcaggaaa actagtgttt gcagcaatcc
1141 ccccacattt ccctattgag aatcttagtc ctggacaaat tacaatgttc ccccatgtga
1201 tcattgatgt taggacatta gaacctgtac ttttgcccct cccagatgtt aggaatagtt
1261 tctttcatta taatcaggag cctgagcccc gtatgaggct tgttgctatg ctgtataccc
1321 cccttagatc taatggttct ggtgatgatg tgtttacagt ttcttgtagg gttcttactc
1381 gcccttcccc agattttgat ttcaattatt tggttccccc aactgttgag tctaaaacta
1441 aaccattcac cctaccaatc ttgactattg gagaattgtc aaattctagg ttcccagctc
1501 caattgatga actgtatacc agtcccaatg agggtttggt tgtccaaccc caaaacggca
1561 gatcaacact cgacggtgaa ctgttgggca ccacccaact tgtgccctca aacatttgct
1621 cactgcgagg acgcaccaat gcccacttgc cagacaacca gcaccgttgg aacatgcaag
1681 tcacaaatcc aaatggaact cccttcgacc ccaccgaaga tgttcctgca ccgctgggta
1741 caccagactt cctagcgaac atctatggag tcaccagtca gaggaacccc aacaacactt
1801 gtcgcgctca tgatggaatt ttggcgactt ggagccccaa gttcacaccc aagctggggt
1861 ctgtggtcct gggcacttgg gaagacagag attttgacat aaaccaaccc acgaggttta
1921 cgcctgttgg tttgtatgac actgatcact tcaatcaatg ggctttacca aattactctg
1981 gagcgctgac tctaaacatg aatttggcac cctccgtcgc ccccctcttc ccaggtgagc
2041 agttactttt cttcaggtcc catataccac tcaagggagg cacttctaat ggtgctattg
2101 attgcctact ccctcaggaa tgggttcagc acttttacca ggagtcagct ccatcctcca
2161 ctgacgtggc tctgatcagg tacaccaacc ctgacacagg acgcgttttg tttgaggcca
2221 aattgcatag gcagggattt atcacagtgt caaactctgg ctctagaccc attgttgtcc
2281 ccccaaatgg ctattttaga tttgattctt gggttaatca attttattct cttgccccca
2341 tgggaactgg gaatgggcgc agaagagtgc agtaatggct ggagctttca tagcagggct
2401 tgctggtgac ttgctcacca atagtgttgg ttcactcgtg aatgctggag ctaatgcaat
2461 aaatcagaag gtagactttg aaaacaacaa gcaattacca caggcttctt tcaatcatga
2521 taaagagatg cttcaagctc aagtccaggc cactaaacaa ttacaggctg acatgattgc
2581 actcagacag ggggtgttga ccgcgggcgg cttctccccc actgatgcag caagaggggc
2641 agttaacgcg cctatgacgc aggtcctgga ctggaatgga actaggtact gggcccccgg
2701 agccacaaaa acaaccactt tctccggagg gctcactggc tcttctcacg ccaggactga
2761 tctgcccagg aaggcgccag ccacttcggc atcagtgcct gcgcctagat ccagttcttc
2821 ttctgcctct acggtctcta ctcgctcaac acttgttagc gggtcttcca attttccttc
2881 ttcaactaag agttctatta gtgttccttc ccaatcgact tccccgtcct cccggactag
2941 tgaatgggtg cgcaaccaaa atagggcact ggagccttac atgaagggag cactacaaac
3001 agcttatgtg acacctcctt ctagtagggc ttctagtaat ggcacagtct caaccgtgcc
3061 aaaggaagtt ttggactcct ggacatctgt gttcaacacc cacagacagc cgctcttcgc
3121 tcatctccgt cggagagggg agtcacaagt ttagtgaaaa gatgattttt cctttcttct
3181 ttctttga
//