Human calicivirus
Typing tool

Complete norovirus genomes

EU072243  GII.3
 GII.P21

Length: 3,230 | 3 CDS 

ORF1: 1..787
ORF2: 768..2414
ORF3: 2414..3178

LOCUS       EU072243                3230 bp    RNA     linear   VRL 26-JUL-2016
DEFINITION  Norovirus Hu/CHN39246/CC04 RNA-dependent RNA polymerase gene,
            partial cds; and capsid protein and minor structural protein genes,
            complete cds.
ACCESSION   EU072243
VERSION     EU072243.2
KEYWORDS    .
SOURCE      Norovirus Hu/CHN39246/CC04
  ORGANISM  Norovirus Hu/CHN39246/CC04
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 3230)
  AUTHORS   Jin,M., Li,H. and Duan,Z.
  TITLE     Molecular characterization of GIIb recombinants and a novel
            genotype of Norovirus detected in China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3230)
  AUTHORS   Fang,Z., Xie,H., Lv,H. and Ye,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUL-2007) National Institute for Viral Disease
            Control and Prevention, China CDC, Department of Viral Diarrhea,
            100 Ying-Xin Street, Xuan-Wu District, Beijing 100052, China
REFERENCE   3  (bases 1 to 3230)
  AUTHORS   Jin,M., Li,H. and Duan,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2009) National Institute for Viral Disease
            Control and Prevention, China CDC, Department of Viral Diarrhea,
            100 Ying-Xin Street, Xuan-Wu District, Beijing 100052, China
  REMARK    Sequence update by submitter
COMMENT     On Jul 15, 2009 this sequence version replaced EU072243.1.
FEATURES             Location/Qualifiers
     source          1..3230
                     /organism="Norovirus Hu/CHN39246/CC04"
                     /mol_type="genomic RNA"
                     /isolate="CHN39246/CC04"
                     /host="Homo sapiens"
                     /db_xref="taxon:462084"
                     /country="China"
                     /collection_date="2004"
     CDS             <1..787
                     /note="ORF1"
                     /codon_start=2
                     /product="RNA-dependent RNA polymerase"
                     /protein_id="ABU51159.2"
                     /translation="QQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVMDVGDFKIS
                     INEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDI
                     KLDPEKLTTKLKEYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQS
                     SILRQMYWTRGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELK
                     EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             768..2414
                     /note="ORF2"
                     /codon_start=1
                     /product="capsid protein"
                     /protein_id="ACT52407.1"
                     /translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
                     QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLSHLARMYNGYAGG
                     FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
                     VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
                     TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
                     QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
                     LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESDDFDQNQP
                     TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
                     GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
                     KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRNQ"
     CDS             2414..3178
                     /note="ORF3"
                     /codon_start=1
                     /product="minor structural protein"
                     /protein_id="ACT52408.1"
                     /translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNV
                     SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPVTKVLDWNG
                     TRYWAPNATSTTSMSGGFTNQAVHRTTPNFKTNQAPKSTPSSGSSVKSNSTQTTSLSS
                     HSSGSSRSSGSTVVSSLSSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSTG
                     TVSTVPKNVLDSWTSALNTRRQPLFAHLRRRGESNV"
ORIGIN      
        1 acaacaaaga gcagtgctgg ctgcagctct ggaaataatg gtcaaattct catcagaacc
       61 tcatctggcc caagtagttg cagaagacct cttgtccccc agtgtgatgg atgtgggtga
      121 tttcaagata tcaatcaacg aggggttacc ctctggtgta ccttgcacct cacaatggaa
      181 ctccattgcc cactggctcc tcacactatg tgcactgtct gaagtcacag atctgtcccc
      241 tgacatcatc caggcaaact ccctcttctc cttttatggc gatgatgaaa tagtgagcac
      301 agacatcaaa ttggacccag agaaattgac aacaaaattg aaggaatacg ggctaaaacc
      361 aacccgtcct gataaaacag aaggaccctt aattatctct gaagatttgg atggcctgac
      421 cttcttacgg agaacggtaa cccgtgatcc ggctgggtgg tttggcaaac tggaccaaag
      481 ctcaatactc aggcagatgt actggaccag gggaccaaac catgaggacc catttgaaac
      541 aatgatacca cactcccaaa gacctataca actgatgtca ctactgggtg aagctgcact
      601 gcatggccca tcattctaca gtaaaattag caaattggtc atctcagaat tgaaagaggg
      661 tggaatggat ttttacgtgc ctagacaaga accaatgttt aggtggatga gattctcaga
      721 tttgagcacg tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt
      781 cgaatgacgc cactccatct aatgatggtg ccgccggcct cgtcccagag atcaacaatg
      841 aggcaatggc gctagaccca gtggcgggtg cagcgatagc agcacccctc actggtcagc
      901 aaaatataat tgatccctgg attatgaata attttgtgca agcacctggt ggtgagttta
      961 cagtttcccc taggaattcc cctggtgaag tgcttcttaa tttggaattg ggcccagaaa
     1021 taaatcccta tttgtcccat cttgctagaa tgtataatgg ttatgcaggt ggatttgaag
     1081 tgcaggttgt cctagctgga aatgcgttta cagcaggaaa gataatcttt gcagctatac
     1141 cccctaattt cccaattgac aatttaagcg cagcacagat cacaatgtgc ccacatgtga
     1201 ttgtggatgt cagacagttg gaaccggtca acctcccgat gcctgacgtt cgcaacaact
     1261 tctttcatta caatcaaggg tctgattcga ggttgcgctt aattgcaatg ctgtatacac
     1321 ctcttagggc aaataattct ggggatgatg tttttactgt gtcttgtaga gtgctgacta
     1381 ggcctagccc tgacttttca tttaatttcc ttgtgccacc tactgtggaa tcaaagacaa
     1441 aacccttcac cctccctatt ctgactatct ctgagatgtc caattctagg tttccagtgc
     1501 cgattgattc tctgcacacc agcccaactg agaatattgt tgtccagtgt caaaatgggc
     1561 gcgtcactct tgatggtgag ttgatgggca ccacccaact cttacctagt caaatctgtg
     1621 cttttagggg cgtgctcacc agatcaacaa gcagggccag tgaccaggcc gacacagcaa
     1681 cccctaggtt gtttaattac tattggcaca tacaattgga taatctaaat gggactcctt
     1741 atgaccctgc agaagacata ccaggccccc tagggacacc agatttccgg ggcaaagtct
     1801 ttggcgtggc cagccaaaga aaccccgaca gcacaactag agcacatgaa gcaaaggtgg
     1861 acacaacagc tggtcgtttc accccaaaac taggctcatt ggagatatcc actgaatctg
     1921 atgactttga ccaaaaccaa ccgacaagat tcaccccagt tggcattggg gttgaccatg
     1981 aggcagactt tcaacaatgg tctttacccg actactctgg acagttcacc cacaacatga
     2041 acttagcccc agctgttgct cccaacttcc ctggtgagca gctccttttc ttccgctcac
     2101 agttaccatc ctctggtggg cgatccaacg ggattctaga ctgcctggtc ccccaagaat
     2161 gggttcagca cttctaccaa gaatcggccc ccgcccaaac ccaagtggcc ctggttaggt
     2221 atgtcaaccc tgacactggt agagtattat ttgaggccaa gctgcacaaa ttaggtttca
     2281 tgactatagc taagaatggt gactctccaa taactgtccc tccaaatgga tactttaggt
     2341 ttgagtcttg ggtgaacccc ttttacacac ttgcccccat gggaactggg aatgggcgta
     2401 gaagaaatca ataatggctg gggcttttat agcaggatta gctggtgaca tattcacaaa
     2461 tactgtagga tctctagtta atgcaggggc taatgccatt aatcaaaaag ttgattttga
     2521 aaataataaa tatttgcaaa atgtttcctt caatcatgat aaggagatgt taaatgcaca
     2581 aattgaggca acaaagaggt tacaggctga catgattgct atcaaacaag gggttttgac
     2641 cgctggcggc ttctccccta ctgatgcagc ccgcggggca atcaatgccc ccgtgactaa
     2701 agtcctagat tggaacggaa caaggtactg ggcaccaaat gccacctcca caacctcgat
     2761 gtcgggtggc ttcacaaatc aggctgtgca cagaaccacg ccaaatttta aaacgaacca
     2821 ggctcccaaa tccacaccca gcagtgggtc ttcagtgaag tcaaactcaa cccaaaccac
     2881 tagcctgagc tcacactcgt ccgggtcgtc tcgatccagc gggtctacag ttgttagctc
     2941 attatcatcc tctaacagga ctagggactg ggtcaaccaa caaaatttta atttggaacc
     3001 acacatgcct ggatccctca ggacagcttt tgttactcca ccatctagta cagcctccag
     3061 tacaggtacg gtctcaaccg tgcccaaaaa tgttttggac tcctggacat ctgcgctcaa
     3121 cacacgcaga cagccgctat tcgcacacct tcgcagaagg ggggagtcaa atgtttagtg
     3181 aaaagattat tttaaatttg atttaaattg gatttgattt ggattctttt
//