Typing tool
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Typing tool
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Complete norovirus genomes
| EU072241 | GII.3 | |
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| GII.P21 |
ORF1: 1..787
ORF2: 768..2414
ORF3: 2414..3178
LOCUS EU072241 3227 bp RNA linear VRL 26-JUL-2016
DEFINITION Norovirus Hu/CHN39186/CC04 RNA-dependent RNA polymerase gene,
partial cds; and capsid protein and minor structural protein genes,
complete cds.
ACCESSION EU072241
VERSION EU072241.2
KEYWORDS .
SOURCE Norovirus Hu/CHN39186/CC04
ORGANISM Norovirus Hu/CHN39186/CC04
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3227)
AUTHORS Jin,M., Li,H. and Duan,Z.
TITLE Molecular characterization of GIIb recombinants and a novel
genotype of Norovirus detected in China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3227)
AUTHORS Fang,Z., Xie,H., Lv,H. and Ye,X.
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2007) National Institute for Viral Disease
Control and Prevention, China CDC, Department of Viral Diarrhea,
100 Ying-Xin Street, Xuan-Wu District, Beijing 100052, China
REFERENCE 3 (bases 1 to 3227)
AUTHORS Jin,M., Li,H. and Duan,Z.
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2009) National Institute for Viral Disease
Control and Prevention, China CDC, Department of Viral Diarrhea,
100 Ying-Xin Street, Xuan-Wu District, Beijing 100052, China
REMARK Sequence update by submitter
COMMENT On Jul 15, 2009 this sequence version replaced EU072241.1.
FEATURES Location/Qualifiers
source 1..3227
/organism="Norovirus Hu/CHN39186/CC04"
/mol_type="genomic RNA"
/isolate="CHN39186/CC04"
/host="Homo sapiens"
/db_xref="taxon:462082"
/country="China"
/collection_date="2004"
CDS <1..787
/note="ORF1"
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="ABU51157.2"
/translation="QQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVMDVGDFKIS
INEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDI
KLDPEKLTTKLKEYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQS
SVLRQMYWTRGPNHEDPFETMIPHSQRPTQLMSLLGEAALHGPSFYSKISKLVISELK
EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 768..2414
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="ACT52405.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMDNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTDNIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESNDFDQNQP
TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLVPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRNQ"
CDS 2414..3178
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="ACT52406.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTASGFSPTDAARGAINAPMTKVLDWNG
TRYWAPNATSTTSMSGGFTNQAVHRTTPNFKTNQAPKPAPSSGSSVKSNSTQITSLSS
HSSGSSRSSGSTVVSSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 acaacaaaga gcagtgctgg ctgcagccct ggaaataatg gtcaaattct catcagaacc
61 tcatctggcc caagtggttg cagaagacct cttgtccccc agtgtgatgg atgtgggtga
121 tttcaagata tcaatcaacg aggggttgcc ctctggtgta ccttgtacct cacaatggaa
181 ctccattgcc cactggctcc tcacactatg cgcgctgtct gaagtcacag atctgtctcc
241 tgacatcatc caggcaaact ccctattctc cttttatggt gatgatgaaa tagtgagcac
301 agacattaaa ttggacccag agaaattgac aacaaaattg aaggaatacg ggctaaaacc
361 aacccgtcct gataaaacag aaggaccctt aattatctct gaagatttgg atggccttac
421 cttcttacgg agaacggtga cccgtgatcc ggctggatgg tttggcaaac tggaccaaag
481 ctcagtactc aggcagatgt actggaccag gggaccaaac catgaggacc catttgaaac
541 aatgataccg cactcccaaa gacctacaca actgatgtca ctactgggtg aagctgcatt
601 acatggccca tcattctaca gtaaaattag caaattggtc atctcagaat tgaaagaggg
661 tggaatggat ttttacgtgc ccagacaaga accaatgttt aggtggatga gattctcaga
721 tttgagcacg tgggagggcg atcgcaatct ggctcccagc tttgtgaatg aagatggcgt
781 cgaatgacgc cactccatct aatgatggtg ccgccggcct cgtcccagag atcaacaatg
841 aggcaatggc gctagaccca gtggcgggtg cagcgatagc agcacccctc actggtcagc
901 agaatataat tgatccctgg attatggata attttgtgca agcacctggt ggtgagttta
961 cagtatcccc taggaattcc cctggtgaag tgcttcttaa tttggaattg ggcccagaaa
1021 taaatcccta tttggctcat cttgctagaa tgtataatgg ttatgcaggt ggatttgaag
1081 tgcaggtagt cctagctgga aatgcgttta cagcgggaaa gataatcttt gcagctatac
1141 cccctaattt cccaattgat aatctaagcg cagcacagat cacaatgtgc ccacacgtga
1201 tcgtggatgt cagacagttg gaaccggtca acctcccgat gcctgacgtt cgcaacaact
1261 tctttcatta caatcaaggg tctgattcga gattgcgctt aattgcaatg ctgtacacac
1321 ctcttagggc aaacaattct ggggatgatg tttttactgt gtcttgtaga gtgctgacta
1381 gacctagccc tgacttttca tttaatttcc ttgtgccacc tactgtggag tcaaagacaa
1441 aacccttcac cctccctatt ctgactatct ctgaaatgtc caattctagg tttccagtgc
1501 cgattgattc tctgcacacc agcccaactg ataatattgt tgtccagtgc caaaatgggc
1561 gcgtcactct tgatggtgag ttgatgggca ccacccaact cttacctagt caaatctgtg
1621 ctttcagggg cgtgctcacc agatcgacaa gcagggccag tgatcaggcc gacacagcaa
1681 cccctaggtt gttcaattat tattggcaca tacaattgga taatctaaat gggactcctt
1741 atgatcctgc agaagacata ccaggccccc tagggacacc agatttccgg ggcaaagtct
1801 ttggcgtggc cagccagaga aaccccgaca gcacaactag agcacatgaa gcaaaggtgg
1861 acacaacagc tggtcgtttt accccaaaac taggctcatt agagatatcc actgaatcta
1921 atgactttga ccaaaaccaa ccaacaagat tcaccccagt tggtattggg gttgaccacg
1981 aggcagactt tcaacaatgg tctttacccg actactctgg tcagttcacc cacaacatga
2041 acttagtccc agctgttgct cccaacttcc ctggtgagca gctccttttc ttccgctcac
2101 agttaccatc ctctggtggg cgatccaacg ggattctaga ctgcctggtc ccccaagaat
2161 gggttcagca cttctaccaa gaatcggccc ccgcccaaac tcaagtggcc ctggttaggt
2221 atgtcaaccc tgacactggt agagtattat ttgaggccaa gctgcacaaa ttaggtttca
2281 tgactatagc taagaatggt gactctccaa taactgtccc tccaaatgga tactttaggt
2341 ttgaatcttg ggtgaacccc ttttatacac ttgcccccat gggaactggg aatgggcgta
2401 gaagaaatca ataatggctg gagcttttat agcaggatta gctggtgata tattcacaaa
2461 tactgtagga tctctagtta atgcaggggc taatgccatt aatcaaaaag ttgattttga
2521 aaacaataaa tatttgcaaa atgcttcttt taatcatgat aaggaaatgt taaatgcaca
2581 aattgaggca acaaagaggt tacaggctga catgattgct atcaaacaag gggttttgac
2641 cgctagcggc ttctccccta ctgatgcagc ccgcggggca atcaatgccc ccatgacaaa
2701 agtcctagat tggaatggaa cgaggtactg ggcaccaaat gccacctcca caacctcgat
2761 gtcgggtggc ttcacaaatc aggctgtgca cagaaccacg ccaaatttta aaacgaacca
2821 ggctcccaaa cccgcaccca gcagtgggtc ttcagtgaag tcaaactcaa cccaaatcac
2881 tagcctgagc tcacactcgt ccgggtcgtc tcgatccagc gggtctacag ttgttagctc
2941 attaccatcc tctaacagga ctagggactg ggtcaaccaa caaaatttta atttggaacc
3001 acacatgcct ggatctctca ggactgcttt tgttactcca ccatctagta cagcctccag
3061 ttcaggtacg gtctcaaccg tgcccaaaaa tgttttggac tcctggacat ctgcgtttaa
3121 tacacgcaga cagccgctat tcgcacacct tcgcagaagg ggggagtcaa atgtttagtg
3181 aaaagattat tttaaatttg atttaaattg gatttgattt ggaatct
//