Human calicivirus
Typing tool

Complete norovirus genomes

EU072235  GII.20
 GII.P20

Length: 2,993 | 3 CDS 

ORF1: 1..591
ORF2: 572..2179
ORF3: 2179..2949

LOCUS       EU072235                2993 bp    RNA     linear   VRL 26-JUL-2016
DEFINITION  Norovirus Hu/CHN42973/CZ05 RNA-dependent RNA polymerase gene,
            partial cds; and capsid protein and minor structural protein genes,
            complete cds.
ACCESSION   EU072235
VERSION     EU072235.2
KEYWORDS    .
SOURCE      Norovirus Hu/CHN42973/CZ05
  ORGANISM  Norovirus Hu/CHN42973/CZ05
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 2993)
  AUTHORS   Jin,M., Li,H. and Duan,Z.
  TITLE     Molecular characterization of GIIb recombinants and a novel
            genotype of Norovirus detected in China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2993)
  AUTHORS   Fang,Z., Xie,H., Lv,H. and Ye,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUL-2007) National Institute for Viral Disease
            Control and Prevention, China CDC, Department of Viral Diarrhea,
            100 Ying-Xin Street, Xuan-Wu District, Beijing 100052, China
REFERENCE   3  (bases 1 to 2993)
  AUTHORS   Jin,M., Li,H. and Duan,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2009) National Institute for Viral Disease
            Control and Prevention, China CDC, Department of Viral Diarrhea,
            100 Ying-Xin Street, Xuan-Wu District, Beijing 100052, China
  REMARK    Sequence update by submitter
COMMENT     On Jul 15, 2009 this sequence version replaced EU072235.1.
FEATURES             Location/Qualifiers
     source          1..2993
                     /organism="Norovirus Hu/CHN42973/CZ05"
                     /mol_type="genomic RNA"
                     /isolate="CHN42973/CZ05"
                     /host="Homo sapiens"
                     /db_xref="taxon:462121"
                     /country="China"
                     /collection_date="2005"
     CDS             <1..591
                     /note="ORF1"
                     /codon_start=1
                     /product="RNA-dependent RNA polymerase"
                     /protein_id="ABU51151.2"
                     /translation="IITLSAMAEVSGLSPEVIQANSCFSFYGDDEIVSTDINLDPAKL
                     TQKLRGYGLVPTRPDKTEGPLVITENLHGLTFLRRTVTRDPAGWFGKLDQDSILRQLY
                     WTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVISEIKSGGLEFY
                     VPRQEAMFRWMRFSDLSTWEGDRNLAPDGVNEDGVE"
     CDS             572..2179
                     /note="ORF2"
                     /codon_start=1
                     /product="capsid protein"
                     /protein_id="ACT52403.1"
                     /translation="MKMASNDASPSSDGSANLVPEINNEVMALEPVAGAAIAAPVAGQ
                     QNIIDPWIRNNFVQAPGGEFTVSPRSAPGEVLLNLPLSPDINPYLAHLSRMYNGYAGG
                     VEVEVVLAGNAFTAGKIIFAAVPPNFPPENLSPSQITMLPHIIVDVRQLEPVRIPLPD
                     VRNNFYHYSRENDSTLRLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
                     TVESKSKPFTIPILTIEEMTNSRFPAPLEMMTTGPSHDIVVQPQNGRCTIDGVLLGTT
                     QLSPVNICSMRGVPTKRTNGTDNCFVQLENPNGSAYDPTEDIPAVLGSPDFVGEFYGT
                     ITQRSPNNSTRAHPFTLNTGSPRYTPKIGSVDIHVTDVEDLNDHEPVKLTPVGLSGSS
                     GSIHQWQLPNYSGVATHNMHLAPSVAPLFPGEQILFFRSTVPGCGGYPNTNIDCLIPQ
                     EWVQHFYQEGAPARTDVALLRFINPDTGRVLFECKLHKHGFITVAYSGNHDLVMPPNG
                     YFRFESWVNQFHTLAPMGTGSGRRRIQ"
     CDS             2179..2949
                     /note="ORF3"
                     /codon_start=1
                     /product="minor structural protein"
                     /protein_id="ACT52404.1"
                     /translation="MAGAFLANLAGGVASNGIGSLINAGANAINQKVEYDFNKQLQSA
                     SFAHDKEMLQAQIQATSQLQRDMMAIKQEVLTAGGFSHADAARGAVGAPMTKLIDWSG
                     TRYWAPNSMRTTGYSGTFTSQAPPQFTPYSKGAGKQSPSGAVSPSISSGSSVSSLRTQ
                     STSLPSNRTMITQSSGLSSSSRFRTSDWVRSQNERMSPFMDGALHTAFVSPPSSRASS
                     SGTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN      
        1 atcatcactc taagcgctat ggcagaagtg tccggtcttt ccccagaagt catacaggcc
       61 aactcatgct tttctttcta cggggatgac gagatagtga gcactgatat taatttagac
      121 ccagctaaac tgactcagaa actgagagga tatggattag tgcccaccag accagacaag
      181 acagaaggcc ccttggttat cactgaaaac ctgcacggac taacattcct gcgaagaact
      241 gtcacccgtg acccagcagg ttggtttgga aaactggatc aagactcaat cctaaggcag
      301 ctctactgga caagaggccc aaaccatgag aacccctacg aaagcatggt cccccattca
      361 caacgtgcca ctcagctcat ggccctctta ggggaggcct ctctccatgg accccaattc
      421 tacaagaaag tcagcaagat ggttatcagt gagataaaaa gtggtggtct ggagttttat
      481 gtgcccagac aagaggctat gttcagatgg atgagatttt cagacctcag cacatgggag
      541 ggcgatcgca atcttgctcc cgatggtgtg aatgaagatg gcgtcgaatg acgctagtcc
      601 gtccagtgac ggatcagcca acctcgtccc agagatcaat aatgaggtga tggctcttga
      661 accagtggct ggtgctgcta ttgctgcccc ggttgctggg caacaaaata taatagatcc
      721 ctggattaga aataactttg tgcaggcccc tggtggtgag ttcactgttt caccaagaag
      781 cgccccgggg gaagtacttc taaatttacc tctaagccct gatatcaatc catatttggc
      841 ccatttgtcc cgaatgtata atggttatgc tggaggcgtg gaggtggagg tggtcctcgc
      901 cgggaatgcg ttcacggcgg gaaaaatcat ctttgccgca gtgccaccca attttcctcc
      961 tgagaacctt agtccaagtc aaataacaat gctcccccat atcatagttg atgtcaggca
     1021 attggaacca gtgcgcatac ccttaccaga tgtgcgcaat aatttctatc attattctag
     1081 agaaaatgac tccacattga gattgattgc aatgttgtac actcccctta gagctaataa
     1141 tgctggtgat gatgtgttta ctgtctcttg tagggtgttg acaaggcctt ctcctgattt
     1201 tgacttcata ttcctggtgc cacccacggt tgaatctaaa tctaaacctt tcactatccc
     1261 aatactcact attgaggaaa tgaccaattc caggttccct gccccgttag agatgatgac
     1321 cacagggccg agccacgaca ttgttgtgca accacaaaac ggacgctgca ccattgatgg
     1381 cgtgctgctc ggcaccacac agttgtcccc agttaacatc tgctccatga ggggtgtccc
     1441 cacaaagcga accaatggga ctgataattg ctttgtgcaa ctcgagaatc caaacggttc
     1501 agcttatgat ccaacagagg acataccagc agtcctgggg tcacctgact ttgtgggaga
     1561 gttctacggg acaatcaccc agaggagtcc aaacaattca actagggctc accctttcac
     1621 cctcaacact ggaagcccta ggtacactcc taaaattggc tcagtggaca tccacgtcac
     1681 agacgttgaa gacctcaacg atcacgagcc agtgaaactc actccagtcg gtctctctgg
     1741 gagcagtggt tcaatccatc agtggcagct accaaattac tcaggagtgg caacccacaa
     1801 tatgcacttg gccccatctg tcgctccatt gttccctggt gagcagattc ttttcttccg
     1861 gtccacagtc cccgggtgcg gtggttatcc aaacacaaac attgactgtt tgattcctca
     1921 agagtgggtt caacacttct accaggaagg tgctccagcc cgtactgatg tggccctgct
     1981 cagatttata aaccctgaca cgggcagagt gctctttgag tgtaaattgc ataagcatgg
     2041 ctttatcact gtggcttact ctggaaatca tgatttggtt atgcccccaa atggttactt
     2101 tagatttgaa tcttgggtga atcaatttca cactcttgcc cccatgggaa caggttcggg
     2161 cagaaggaga atccagtaat ggcaggggca tttctagcaa atctggccgg tggcgtggca
     2221 tcaaacggga ttggctctct gatcaacgca ggtgccaacg ctatcaatca aaaagttgag
     2281 tatgatttta ataagcaact ccagagcgca tcgttcgctc acgataaaga gatgctccag
     2341 gcacaaattc aggcaacaag tcagctccaa cgtgacatga tggccatcaa gcaagaggtg
     2401 ttgaccgctg gcggcttctc tcacgctgat gcagccaggg gcgcggttgg agcaccaatg
     2461 acaaagttga tcgactggag cggcacaaga tattgggctc caaattctat gagaacaaca
     2521 ggctattctg gaactttcac cagccaagct cctccacagt tcacccccta ctctaaaggt
     2581 gcaggcaaac aatcaccctc tggggcagtg tcgccctcaa tttcttctgg ctcttctgtg
     2641 agttctttga gaacacaatc aacttccttg ccatctaatc gaactatgat aacacaatca
     2701 tcaggcctct cttcatcctc tcgttttagg acgtcagatt gggtgcgcag tcaaaatgag
     2761 agaatgagcc cattcatgga tggggcactc cacacagctt ttgtgtcccc cccatcgagt
     2821 agggcttcta gttctggtac agtctcaacc gtaccaaagg aggttttgga ctcctggact
     2881 cctatgttta atacacacag gcagccactc ttcgcccatc tgcgcaggcg aggggagtca
     2941 caaatttagt gaaaagattg atttgaattg attaattctt gtttctttct ttt
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