Typing tool
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Typing tool
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Complete norovirus genomes
| EF670650 | GII.14 | |
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| GII.P7 |
ORF1: 1..4928
ORF2: 4909..6519
ORF3: 6519..7313
LOCUS EF670650 7359 bp RNA linear VRL 24-JUL-2016
DEFINITION Norovirus Hu/Shanxi/50106/2006/CHN polyprotein gene, partial cds;
and capsid protein and minor structural protein genes, complete
cds.
ACCESSION EF670650
VERSION EF670650.2
KEYWORDS .
SOURCE Norovirus Hu/Shanxi/50106/2006/CHN
ORGANISM Norovirus Hu/Shanxi/50106/2006/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7359)
AUTHORS Jin,M., Xie,H.P., Duan,Z.J., Liu,N., Zhang,Q., Wu,B.S., Li,H.Y.,
Cheng,W.X., Yang,S.H., Yu,J.M., Xu,Z.Q., Cui,S.X., Zhu,L., Tan,M.,
Jiang,X. and Fang,Z.Y.
TITLE Emergence of the GII4/2006b variant and recombinant noroviruses in
China
JOURNAL J. Med. Virol. 80 (11), 1997-2004 (2008)
PUBMED 18814250
REFERENCE 2 (bases 1 to 7359)
AUTHORS Jin,M., Xie,H. and Duan,Z.
TITLE Direct Submission
JOURNAL Submitted (11-JUN-2007) Department of Viral Diarrhea, National
Institute for Viral Disease Control and Prevention, China CDC, 100
Ying-Xin Street, Xuan Wu District, Beijing 100052, China
REFERENCE 3 (bases 1 to 7359)
AUTHORS Jin,M., Xie,H. and Duan,Z.
TITLE Direct Submission
JOURNAL Submitted (13-NOV-2009) Department of Viral Diarrhea, National
Institute for Viral Disease Control and Prevention, China CDC, 100
Ying-Xin Street, Xuan Wu District, Beijing 100052, China
REMARK Sequence update by submitter
COMMENT On Nov 13, 2009 this sequence version replaced EF670650.1.
FEATURES Location/Qualifiers
source 1..7359
/organism="Norovirus Hu/Shanxi/50106/2006/CHN"
/mol_type="genomic RNA"
/strain="Hu/Shanxi/50106/2006/CHN"
/db_xref="taxon:453544"
/country="China"
CDS <1..4928
/note="nonstructural protein; ORF1; contains RNA
polymerase"
/codon_start=3
/product="polyprotein"
/protein_id="ABS12174.2"
/translation="SSGQHCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETITGLPDL
TTVQNEHENTPYTVPPLSEREHRSATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHK
PPAAISLATIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWV
LELNDTWLNRRCISRTTGFFKPYQSWNRKPLPTVDDGKIEKVANAILCALGSLFSKPI
KDLLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNIFWTPPDVSNFIASLIGDFE
LQGPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLV
MKWFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEK
ARKLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKT
HMARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQ
ELADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAE
SPEIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQG
SLTARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAAL
KNVKTLEDLKFALRDVKFNECEIIYKNSKYRVSSNGKGSVSVDKIEDNASQTANEVQS
ALLRLRQARARYYISCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQEVNES
EKEVAQSRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNG
KYSIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLV
TGTDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSS
NLLITTTHVLPKGVKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEG
TVCSILIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGD
CGCPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILG
PGKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVERGPSLQQVMRDQLRPFTEP
RGKPPRPAVLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHW
NGESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDL
GTMIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWD
STQQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFIISVQEGLPSGVPCT
SQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLR
EYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGP
NHENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQE
AMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 4909..6519
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="ABS12175.2"
/translation="MKMASNDATPSDDGAAGLVPEINSEVMALEPVAGASLAAPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGELLLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKILFAAIPPSFPYENLSPAQLTMCPHVIVDVRQLEPVLLPMPD
IRNVFYHYNQNNSPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFQFTFLVPP
TVESKTKNFTLPVLRVSEMTNSRFPVVLDQMYTSRNENIIVQPQNGRCTTDGELLGTT
ILQSVSICNFKGTMQAKLNEEPRYQLQLTNLDGSPIDPTDDMPAPLGTPDFQAMLYGV
ASQRSSRDNATRAHDAQIDTAGDTFAPKIGQVRFKSSSNDFDLHDPTKFTPIGVNVDD
QHPFRQWFLPNYGGHLALNNHLAPAVTPLFPGEQILFFRSYIPSAGGHTDGAMDCLLP
QEWVEHFYQEAAPSQSDIALVRFINPDTGRVLFEAKLHKQGFLTIAASGDHPIVMPTN
GYFRFEAWVNPFYTLAPVGTGSGRRRIQ"
CDS 6519..7313
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="ACY82592.1"
/translation="MAGAFLAGLAGDVVTSSLGSLVGAGANAINQKVEYDFNRQLQEA
SFRHDKDMLKAQVAATAGLQQAMIDIKREALTAGGFSPADAARGAVRAPMTQILDWNG
SRYWAPNSMKTTGYSGTFASQGIKSSPHLSSQTPSAVKSTKPLPSISSSSSVYSSPST
APSQSTQSTTLSAGTGSSRSDTVSTKTSTLSRTSDWVRGQNEMLGPFMSGALQTAYVT
PPSSRASSQGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 ccagcagtgg tcaacattgc cccacagtta agatcgggcc taaaacatta acaattcccc
61 ctgagccccc aaatggtgaa gacactgtgc agtttgatgc aaagtcggaa actataaccg
121 ggctgccgga cttgacaacg gtgcaaaacg aacatgaaaa caccccatac accgtccccc
181 cattaagtga gagggagcac agatcggcca ctgaaccact tcctggcaca atattggaga
241 tgtgggatgg tgaattttac cactactccg tgtatgtcag cgatggcaaa gctctggggg
301 tccacaaacc accggctgct ataagcctcg cgacgataga gctcaccccc atatctctct
361 actggagacc cgtttacacc cccaactatt tggtctcccc agacacattg aaaggcctcg
421 ctggtgagaa gttcccctat acggccttca gtaacaactg ttataacttt tgttgttggg
481 tgcttgagct caacgacacg tggctcaaca gaagatgcat ttccagaacc accggcttct
541 tcaaacctta tcaatcttgg aacaggaagc ccctcccaac cgttgatgat ggaaagatcg
601 aaaaggtggc caacgcgatc ctctgcgcac ttggctcact gttctcaaaa ccaatcaaag
661 atttgttagg caaacttaag ccattgaacc tgctacactt gcttgcgtca tgcgattgga
721 cgtttgcagg tatagtggag acagtcatct taatggcaga acttttcaat atcttctgga
781 ccccgccaga tgtctctaat tttatagcct ccctgatagg tgattttgaa ttacaagggc
841 ctgaggacct ggctgtggaa ctcgttcctg tggttatggg tggcatagga atggttctcg
901 gcttcaccgc tgagaagata ggccgtatgc tgtcatccgc tgcatcaaca ctgcgggcat
961 gcaaagacct agggaactat gcccttgaca ttctcaaatt ggtcatgaag tggttcttcc
1021 caaagaagga agagaaagct gagatggaaa ccttgagggc gattgaggat gccgtcctag
1081 atatggaagc tatagggaat aaccatctca cgaccctcct caaggacaaa gacagcctca
1141 cggcttttat gaagaccctg gacctagaag aggaaaaagc aagaaaactg tccactaagt
1201 catcttcacc ggacatcgtc ggcaccatta atgccatact agctaggatt gctgctgcca
1261 gatcccttct acataaggcc aaagaagaga tgtttagtag gatcagacca gtggtcgtta
1321 tgatatcagg cagacctggc attggcaaaa cccacatggc aagacatttg gctaagagca
1381 tcgccaacac catgagtggc gaccagagag tcgggctcgt cccacgcaac ggtgtcgacc
1441 actgggatgc ctacagagga gagagggtgg tcttgtggga tgactacggt atggggagcc
1501 ctgttaaaga tgccttaaca ctacaggagc tggccgacac ctgtccagtc actttaaatt
1561 gtgataggat tgagaacaag gggaagatgt tcgacagtga tgtcatcata atcacaacca
1621 acctggtcaa ccccgcgccc ctcgactatg tgaacttcga ggcgtgttcc aggagagttg
1681 acttcttggt ctatgcagag tcaccagaga ttgaaaaggt caagagggac ttccctggcc
1741 aacctgacat gtggaaagac cattttaagc cagacttttc tcacatcaag ctaactttag
1801 ccccccaggg cgggtttgac aagaatggca acactccaca cggtaagggt accatgcggt
1861 ccctgaccca ggggtccctg actgcaagag ttgcgggcct tgtccatgag aggagagatg
1921 agttccaact ccaaggaaac gacctccaaa catacaattt tgacaccaac agagtctccg
1981 cattcagaaa actggctgca gataacaagt atggtatcat ggaaacgatg agagtaggtg
2041 cggcactcaa aaatgtaaag accttggaag atctaaaatt tgcattaagg gatgtgaaat
2101 ttaatgagtg tgaaataatt tacaagaact ctaagtatcg agtctcttcc aacggtaaag
2161 gctcagtttc tgttgacaaa attgaggaca atgcatccca gaccgcaaac gaggtacaat
2221 cagcacttct caggctcaga caagcgaggg ccagatatta catcagctgc ttccaagacc
2281 tcgtctacac tctcatacag gttgccggag catcattcgt tgtcaacaga atttccaaaa
2341 ggttctgctg ggaaaggtgg gtcaaaccaa ccgagaccca ggaagtgaat gagtccgaaa
2401 aggaagtggc tcaaagtaga tgggaaattg agcccaagga cacagaacca gaaggcaaga
2461 agggtaaaaa caagaaagga aggggcaaga aacacacagc tttctctagc aaaggcctga
2521 gtgatgaaga gtatgacgag ttcaagagaa tcagggaaga aaggaatgga aagtactcca
2581 ttgaggaata cctgcaagac cgggaccgct attatgaaga agtggcggtt gcccgggcaa
2641 cagaggagga cttctgtgaa gaggaagagg ccaaaataag acaaagaatt ttccgcccga
2701 caaagaaaca aaggaaggag gaaaggggtg tacttggctt agtcaccggc acagacatca
2761 gaaagaggag gccagacgat tttcaaccaa aaggcaatct atgggcagat gacaccagga
2821 gtgtggacta caatgagaga cttgactttg aagcgccccc aagtgtctgg tcaagaatag
2881 tcccattagg cactggttgg ggtttctggg tttcatccaa ccttctaatc acaacaacac
2941 acgtcctgcc taaaggggtt aaggaactct ttggagttga aatcaaacag atccaagttc
3001 ataagtctgg agagttttgc aggtttagat tcccaagacc aatcaggcca gatgtcacag
3061 ggctcgtgtt ggaggaaggc gccccagaag gcactgtctg ttctatactc ataaaaagac
3121 ctacaggtga gatgatcccc ttggcagtga ggatgggcac acacgcatcc atgaaaatac
3181 aaggcaggac cgttggtggc cagatgggaa tgcttctaac aggagcaaat gcgaagaaca
3241 tggatcttgg caccggccct ggtgactgcg gttgtcccta catctacaaa cgcggcaacg
3301 acatagttgt cgcgggtgtc cacaccgcag cagcccgggg aggtaacact gtcatatgcg
3361 ccactcaagg gcaagatggg gaagcagtcc ttgagggaaa tgaggacctc ggtacctact
3421 gtggcgcccc aattctgggc cctggtaagg cacctaaact cagcacgaag accaagtttt
3481 ggcgctcatc accagatgcc ttgccacctg gcacatatga acctgcttac ctgggaggca
3541 aagaccccag agtggaaaga ggaccttccc tgcagcaagt catgagagac cagctgagac
3601 ccttcacaga acccagggga aaaccgccta gacctgcagt cttagaagaa gccaagaaga
3661 cagtgatgaa tgttttagaa caaaccattg accctgcaaa accgtggtcc tactcgcaag
3721 catgtgcctc actggacaaa accacttcta gtggtagccc ccatcatgta aagaaaaatg
3781 accactggaa tggggagtcc ttcactggtc cccttgcaga tcaggcatcc aaagccaacc
3841 tcatgtatga acaggctaaa catgtgcagc ccgtgtacac ggccgcgctc aaagatgagc
3901 ttgttaagac tgacaagatc tacaaaaaga taaagaagag gctcctatgg gggtcggatc
3961 ttggaacaat gatcaggtgc gccagggctt ttggtggtct catggacagc atgaaggcaa
4021 gctgtatagc tcttccatgc agggtaggaa tgaacatgaa tgaagatggc cctatcatat
4081 ttgacaaaca ttctaagtat aggtaccact atgatgctga ctattctagg tgggactcaa
4141 cccagcaaag gagcattctt tctgccgcta tggaagtgat ggtgcgattt tctgctgaac
4201 cagaattggc acaagtggtt gcagaggacc ttttggcgcc tagtcagctt gatgttggtg
4261 attttatcat ctcagttcag gagggtttgc catcaggagt cccatgtaca tcacaatgga
4321 actcaatagc acactggatc ctaactttga gtgcgatggc agaagtgtca ggtctctcac
4381 cagatgttgt ccaagctcac tcctgctttt cattttatgg ggacgatgag atcgtcagca
4441 ctgacatcaa ccttgacccc atgaagttga cacagaaact cagggagtac ggcctggtcc
4501 ccacccgacc tgataaaact gaaggtcccc tcgtcataac tgaagacctc accggcctga
4561 cgttccttcg taggtcgatt gcacgggacc cagctggatg gtttggaaaa ttggaccaag
4621 attcaatcct caggcaatta tactggacaa gggggcctaa ccatgagaac ccgtacgaga
4681 gcatggtccc tcattcccag cgggccacac agcttatggc tcttcttggt gaggcttcac
4741 tgcatggtcc ccaattctac aagaaagtca gcaagatggt tattaatgag attaagagtg
4801 gtggtctgga attttatgtg cccagacagg aggccatgtt caggtggatg agattctctg
4861 acctcagcac atgggagggc gatcgcaatc ttgctcccga aggtgtgaat gaagatggcg
4921 tcgaatgacg ctactccatc tgatgatggt gcagccggcc tcgtaccaga gatcaacagt
4981 gaggttatgg ctcttgaacc cgtcgctggg gcctcccttg cagcccccgt agtcggccaa
5041 cagaatataa ttgatccctg gattagaaat aattttgtac aagcccctgc tggtgaattc
5101 acagtttccc ctagaaactc tcctggagaa cttctacttg atttggaatt gggtcctgaa
5161 cttaatccct atcttgcaca tttggccagg atgtacaatg ggcatgcggg aggaatggaa
5221 gtgcagatag tactggctgg gaatgcgttc acagctggta aaatcctatt tgctgccatc
5281 ccgcctagct tcccctatga aaatttgtca cccgctcaat tgactatgtg cccccatgtg
5341 atagtggatg tgagacaatt agaaccagtg cttctgccaa tgccagatat aagaaatgtt
5401 ttctatcact ataaccagaa caatagtccc aaacttaggc ttgtagctat gctttatact
5461 cctctgaggg ctaacaactc aggtgatgac gtgttcacgg tatcttgccg cgttttaaca
5521 cgtccttctc cagatttcca gttcaccttt ctggtcccac ctacagttga gtctaaaact
5581 aagaatttca cccttcccgt tcttagagtc tcagagatga caaattcaag gttccccgtt
5641 gttttggacc aaatgtatac aagcaggaat gaaaacatca ttgtccaacc ccaaaacggc
5701 aggtgcacga ctgacggtga gctgcttggc actaccatct tgcagtctgt gtctatttgc
5761 aattttaaag gaacaatgca ggcaaagctg aatgaagaac cacgatacca gttacaactc
5821 accaacttgg atgggtcacc catagatcca acagatgata tgcctgcccc tcttggcaca
5881 ccagatttcc aggccatgtt atatggcgtt gcaagccaac gctcttccag agacaatgcc
5941 accagggcac atgatgcaca gattgacact gcgggcgaca cattcgcccc gaaaattggc
6001 caggttcgtt ttaaatcaag ctctaatgat tttgacctac atgaccctac aaaattcaca
6061 cctattggtg tcaatgtgga tgatcagcac ccttttagac agtggttcct accaaactac
6121 ggtggtcacc ttgccctgaa caatcattta gcccccgctg tgacaccact ctttcctggc
6181 gagcagattt tattcttcag gtcatacatt ccaagcgccg gaggccacac agacggtgct
6241 atggactgct tgctgcccca agagtgggta gagcacttct accaggaagc tgccccttcc
6301 caatctgaca tcgcactggt aaggttcatc aaccctgaca caggaagagt gctctttgaa
6361 gctaaattgc ataaacaagg tttcctcaca attgcagcat ctggagatca ccctattgtg
6421 atgcccacta atggttactt taggtttgaa gcttgggtta accctttcta tactctcgcc
6481 cccgtgggaa ctgggtctgg gcgcaggagg attcaataat ggctggagct ttccttgcag
6541 gcttggcagg tgacgttgtg acttccagct tgggctcact tgtgggcgct ggagccaacg
6601 ccatcaacca gaaagtggag tatgacttca acagacagct ccaggaggca tcttttagac
6661 atgataagga tatgctcaaa gcccaggttg cagcaacagc aggccttcaa caggccatga
6721 tagacatcaa gcgggaggca ttgaccgcag gcggcttttc ccccgctgat gctgcaagag
6781 gtgcagttag agcgcctatg acacagattc ttgactggaa tggttctaga tattgggccc
6841 ccaactctat gaagacaact ggctattcag gtacatttgc ttcccaaggc attaaaagtt
6901 ccccccacct gtctagtcaa actccaagtg ctgttaaatc tactaaacct ttaccatcta
6961 tatctagttc ttctagtgta tatagttctc cttctactgc cccttcacaa tcaacacaat
7021 caacaacgct gtctgcagga acagggtcct ccagatctga caccgtgtcc acaaagacct
7081 ctacactgtc gaggacaagt gactgggtca gaggtcaaaa tgagatgctt ggcccgttca
7141 tgagtggtgc actccaaact gcttatgtca caccaccatc gagcagggcc tcatcacaag
7201 ggacggtctc gaccgtaccc aaggctgttt tggactcctg gactcccatg ttcaacaccc
7261 acaggcagcc tctcttcgcc cacttgcgta ggcgagggga gtcacagatt tagtgaaaag
7321 gacgattagg gtttcttcct ttccccttct tattctttt
//