Human calicivirus
Typing tool

Complete norovirus genomes

EF670649  GII.3
 GII.P12

Length: 3,230 | 3 CDS 

ORF1: 1..787
ORF2: 768..2414
ORF3: 2414..3178

LOCUS       EF670649                3230 bp    RNA     linear   VRL 24-JUL-2016
DEFINITION  Norovirus Hu/Hebei/48580/2006/CHN RNA polymerase gene, partial cds;
            and capsid protein and minor structural pretein genes, complete
            cds.
ACCESSION   EF670649
VERSION     EF670649.2
KEYWORDS    .
SOURCE      Norovirus Hu/Hebei/48580/2006/CHN
  ORGANISM  Norovirus Hu/Hebei/48580/2006/CHN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 3230)
  AUTHORS   Jin,M., Xie,H.P., Duan,Z.J., Liu,N., Zhang,Q., Wu,B.S., Li,H.Y.,
            Cheng,W.X., Yang,S.H., Yu,J.M., Xu,Z.Q., Cui,S.X., Zhu,L., Tan,M.,
            Jiang,X. and Fang,Z.Y.
  TITLE     Emergence of the GII4/2006b variant and recombinant noroviruses in
            China
  JOURNAL   J. Med. Virol. 80 (11), 1997-2004 (2008)
   PUBMED   18814250
REFERENCE   2  (bases 1 to 3230)
  AUTHORS   Jin,M., Xie,H. and Duan,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JUN-2007) Department of Viral Diarrhea, Institute for
            Viral Disease Control and Prevention, China CDC, 100 Ying-Xin
            Street, Xuan Wu District, Beijing 100052, China
REFERENCE   3  (bases 1 to 3230)
  AUTHORS   Jin,M., Xie,H. and Duan,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-NOV-2009) Department of Viral Diarrhea, Institute for
            Viral Disease Control and Prevention, China CDC, 100 Ying-Xin
            Street, Xuan Wu District, Beijing 100052, China
  REMARK    Sequence update by submitter
COMMENT     On Nov 20, 2009 this sequence version replaced EF670649.1.
FEATURES             Location/Qualifiers
     source          1..3230
                     /organism="Norovirus Hu/Hebei/48580/2006/CHN"
                     /mol_type="genomic RNA"
                     /strain="Hu/Hebei/48580/2006/CHN"
                     /db_xref="taxon:453497"
                     /country="China"
     CDS             <1..787
                     /note="nonstructural protein; ORF1"
                     /codon_start=2
                     /product="RNA polymerase"
                     /protein_id="ABS12172.2"
                     /translation="QQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKIS
                     INEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIRANSLFSFYGDDEIVSTDI
                     KLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQS
                     SILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELK
                     EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             768..2414
                     /note="ORF2"
                     /codon_start=1
                     /product="capsid protein"
                     /protein_id="ABS12173.2"
                     /translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
                     QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
                     FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
                     VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
                     TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
                     QLLPSQICAFRGVLTRSTSRPSDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
                     LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
                     TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
                     GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
                     KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
     CDS             2414..3178
                     /codon_start=1
                     /product="minor structural pretein"
                     /protein_id="ACZ36481.1"
                     /translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
                     SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
                     TRYWAPNATSTTSMSGGFTNQAVHRTTPNFKTNQAPKSTPSSGSSVRSHSTQITSLSS
                     HSSGSSRSSGSTVVSSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
                     TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN      
        1 acaacaaaga gccgtgttag cagcagcctt agaaatcatg gtcaagttct ccccagagcc
       61 gcatctggcc caaaaggttg cagaagacct tctttctccc agcgtgatgg acgtgggtga
      121 tttcaaaata tcaatcaatg agggtctccc ctccggggtg ccctgcacct cccaatggaa
      181 ttccatcgcc cactggctcc tcactctctg tgcactctct gaggttacaa acctgtcccc
      241 tgacattatt cgggccaact ctctcttttc tttctacggt gatgatgaaa ttgtgagtac
      301 agacataaaa ttggacccag aaaaactgac agcaaaactc aaggaatacg ggttgaaacc
      361 gacccgccct gacaagactg aaggacccct tgtcatctct gaagacctga atggcctaac
      421 cttcctgcgg aggaccgtga cccgcgaccc agcaggctgg tttgggaagt tggaacagag
      481 ttcaatactc agacaaatgt attggactag gggccccaac catgaagacc catctgaaac
      541 aatgatacca cactcccaga ggcccataca attgatgtct ttgctgggtg aggctgcact
      601 ccacggccca gcattctaca gcaaaatcag taaactggtc attgcagagt tgaaggaagg
      661 tggcatggat ttttacgtgc caagacaaga gccaatgttc agatggatga gattctcgga
      721 tctgagcacg tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt
      781 cgaatgacgc cactccatct aatgatggtg ccgccggcct cgtcccagag atcaacaatg
      841 aggcaatggc gctagatcca gtggcgggtg cagcgatagc agcacccctc actggccagc
      901 aaaatataat tgatccctgg attatgaata attttgtgca agcacctggt ggtgagttta
      961 cagtgtcccc taggaattcc cctggtgaag tgcttctcaa tttggaattg ggcccagaaa
     1021 taaatcccta tttggcccat cttgctagaa tgtataatgg ttatgcaggt gggtttgaag
     1081 tgcaggtagt cctagctgga aatgcgttta cagcaggaaa gataatcttt gcagctatac
     1141 cccctaattt cccaattgac aatctaagcg cagcacagat cacaatgtgc ccacatgtga
     1201 ttgtggatgt cagacagttg gaaccggtca accttccgat gcctgacgtt cgcaataact
     1261 tcttccatta caaccaaggg tctgattcga gattgcgctt aattgcaatg ctgtatacac
     1321 ctcttagggc aaataattct ggggatgatg tttttactgt gtcttgtaga gtgctgacta
     1381 ggcctagccc tgacttttca tttaatttcc ttgtgccacc tactgtggag tcaaagacaa
     1441 aacccttcac cctccctatt ctgactatct ctgaaatgtc taattctagg tttccagtgc
     1501 cgattgattc tctgcacacc agcccaactg agaatattgt tgtccagtgc caaaatggac
     1561 gcgtcactct tgatggtgag ttgatgggca ccacccaact cttacctagt caaatctgtg
     1621 cttttagggg cgtgctcacc agatcaacaa gcaggcccag tgatcaggcc gacacagcaa
     1681 cccctagatt gtttaattat tattggcaca tacaattgga taatctaaat gggactcctt
     1741 atgatcctgc agaagacata ccaggccccc tggggacacc agatttccgg ggcaaagtct
     1801 ttggcgtggc cagccagaga aatcccgaca gtacaactag agcacatgaa gcaaaggtgg
     1861 acacaacagc tggtcgtttt accccaaaac taggctcatt agagatatcc actgaatctg
     1921 gtgactttga tcaaaaccaa ccaacaagat tcaccccagt tggcattggg gttgaccacg
     1981 aggcagattt ccaacaatgg tctttacccg actattctgg tcagttcacc cacaacatga
     2041 acttagcccc agctgttgct cccaacttcc ctggtgagca gctccttttc ttccgctcgc
     2101 agttaccatc ttctggtggg cgatccaacg ggattctaga ctgcctggtc ccccaagaat
     2161 gggtccagca cttctaccaa gaatcggccc ccgcccaaac ccaagtggcc ctggttagat
     2221 atgtcaaccc tgacactggt agagtgttgt ttgaggccaa gctgcacaaa ttaggtttca
     2281 tgactatagc taagaatggt gactctccaa taactgtccc cccaaatgga tactttaggt
     2341 ttgaatcttg ggtgaaccca ttttatacac ttgcccccat gggaactggg aatgggcgta
     2401 gaaggattca ataatggctg gagcttttat agcaggacta gctggtgata tattcacaaa
     2461 cactgtagga tctctagtta atgcaggggc taatgccatt aatcaaaaag ttgattttga
     2521 aaacaataaa tatttgcaaa acgcttcctt taatcatgat aaggaaatgt taaatgcaca
     2581 aattgaggca acaaagaggt tacaggctga catgattgct atcaaacaag gggttttgac
     2641 cgctggcggc ttttccccta ctgatgcagc ccgcggggca attaatgccc ccatgacaaa
     2701 agtcctagat tggaatggaa cgaggtactg ggcaccaaat gccacctcta caacctcgat
     2761 gtcgggtggc ttcacaaacc aggctgtgca cagaaccacg ccaaatttta aaacgaacca
     2821 ggcccccaaa tccacaccca gcagtgggtc ttcagtgagg tcacactcaa cccaaatcac
     2881 tagtctgagc tcacactcgt ccgggtcgtc tcgatccagc gggtctacag ttgttagctc
     2941 attaccatcc tctaacagga ctagggactg ggtcaaccaa caaaatttta atttggaacc
     3001 acacatgcct gggtccctta ggacagcttt tgttactcca ccatctagta cagcctctag
     3061 ttcaggcacc gtctcaaccg tgcccaaaaa tgttttggac tcctggacat ctgcgtttaa
     3121 tacgcgcaga cagccgctat tcgcacacct tcgtagaagg ggggagtcaa atgtttagtg
     3181 aaaagattac tttaaatttg atttaaattg gatttgattt ggaatctttt
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