Typing tool
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Complete norovirus genomes
EF187497 | GII.4 Yerseke | ||
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GII.P4 Hunter |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7513LOCUS EF187497 7559 bp RNA linear VRL 06-FEB-2012 DEFINITION Norovirus Hu/GII.4/Kenepuru/NZ327/2006/NZL, complete genome. ACCESSION EF187497 VERSION EF187497.2 KEYWORDS . SOURCE Norovirus Hu/GII.4/Kenepuru/NZ327/2006/NZL ORGANISM Norovirus Hu/GII.4/Kenepuru/NZ327/2006/NZL Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7559) AUTHORS Tu,E.T., Bull,R.A., Greening,G.E., Hewitt,J., Lyon,M.J., Marshall,J.A., McIver,C.J., Rawlinson,W.D. and White,P.A. TITLE Epidemics of gastroenteritis during 2006 were associated with the spread of norovirus GII.4 variants 2006a and 2006b JOURNAL Clin. Infect. Dis. 46 (3), 413-420 (2008) PUBMED 18177226 REFERENCE 2 (bases 1 to 7559) AUTHORS Tu,E.T.-V., McIver,C.J., Bull,R.A., Lyon,M.J., Greening,G.E., Hewitt,J., Marshall,J.A., Rawlinson,W.D. and White,P.A. TITLE Direct Submission JOURNAL Submitted (15-DEC-2006) School of Biotechnology and Biomolecular Sciences, University of New South Wales, Anzac Parade, Sydney, NSW 2052, Australia REFERENCE 3 (bases 1 to 7559) AUTHORS Eden,J.-S. and White,P.A. TITLE Direct Submission JOURNAL Submitted (06-FEB-2012) School of Biotechnology & Biomolecular Sciences, University of New South Wales, Anzac Parade, Sydney, NSW 2052, Australia REMARK Sequence update by submitter COMMENT On Feb 6, 2012 this sequence version replaced EF187497.1. FEATURES Location/Qualifiers source 1..7559 /organism="Norovirus Hu/GII.4/Kenepuru/NZ327/2006/NZL" /mol_type="genomic RNA" /strain="Hu/NZ327/2006/NZL" /isolation_source="fecal specimen" /db_xref="taxon:438974" /country="New Zealand" /note="genotype: GII.4" 5'UTR 1..4 CDS 5..5104 /note="ORF1" /codon_start=1 /product="non-structural polyprotein" /protein_id="ABQ81515.2" /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LARVELAPLSLYWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYVLQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIASSLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLSLAPQGGFDKNGNTPHGRGVMKTLTTGSLIARA SGLLHERLDEFELQGPTLATFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM PELKQALKNISIKKCQIVYSGCTYVLESDGKGNVKVDRVQSASVQTNNELTGALHHLR CARIRYYVKCIQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEENTSKDGC PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKNMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5085..6707 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="ABQ63283.2" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIVFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSTIVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGTQEYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTRRDGSTRGHKATVSTGSVNFTPKLGRIQFSTDTSNDFETGQSTRFTPVGVVQDG STTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPSFPGEQLLFFRSTMPGCSGYPNMNLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6707..7513 /note="VP2" /codon_start=1 /product="minor capsid protein" /protein_id="AEZ56467.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARSTTYNAGRFSTPQPSGALPGRTNLRAAVPARGSSNTPS NSSIATSVYSNQTASTRLGSTAGSGASVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" 3'UTR 7514..7559 ORIGIN 1 gtgaatgaag atggcctcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga 61 caccgcaaaa tcttcaagtg acggagtgct ttctagtatg gctgtcactt ttaaacgagc 121 cctcggggcg cggcccaaac agcctccccc gagggaaata ccacaaagac ccccacgacc 181 acctactcca gaactggtta aaaatattcc ccctcccccg cccaacggag aggatgaaat 241 agtggtttct tatagtgtca aagatggtgt ttccggtttg cctgaccttt ctaccgtcag 301 gcaaccagaa gaatctaaca cggccttcag tgtccctcca ctcaatcaga gggagaatag 361 agatgctaag gagccactga ctggaacaat tctggaaatg tgggatggag aaatctacca 421 ttatggcctg tatgtggagc gaggtcttgt actgggtgtg cataaaccac cagctgccat 481 tagcctcgct agggtcgagc tagcaccact ctccttgtac tggagacctg tgtacactcc 541 tcagtacctc atctctccag acactctcaa gaaattacac ggagaaacgt tcccctacac 601 agcctttgac aacaattgct atgccttttg ttgctgggtc ctggatctaa atgactcgtg 661 gctgagcagg agaatgatcc agaggacaac tggtttcttc aggccctacc aagattggaa 721 taggaaaccc ctccccacta tggatgactc caaattaaag aaggtggcta acatattcct 781 gtgtgctctg tcttcgctat tcaccaggcc cataaaggat ataataggga agctaaggcc 841 tcttaacatc ctcaacatct tggcctcatg tgattggact tttgcaggca tagtggagtc 901 cctgatactc ttggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttactaggtg actacgtgct gcaaggacct gaggatcttg cagtggagct 1021 cgtccctgta gtgatggggg gaattggttt ggtactagga ttcaccaaag agaagatagg 1081 aaaaatgctg tcatctgctg catccacctt gagagcttgt aaagaccttg gtgcatatgg 1141 gctagagatc ctaaagttgg tcatgaagtg gttcttcccg aagaaggagg aagcaaatga 1201 actggctata gtgagatcta tcgaggatgc agtcctggat ctcgaggcaa ttgaaaacaa 1261 ccatatgacc accttgctca aagacaaaga cagcctggca acctacatga gaacccttga 1321 ccttgaggag gagaaagcta ggaaactctc aaccaagtct gcttcacctg acattgtggg 1381 cacaatcaac gcccttctgg cgagaatcgc tgctgcacgt tctctggtgc atcgagcgaa 1441 ggaggaactt tccagcagac caagacctgt agtattgatg atatcaggca gaccaggaat 1501 agggaagacc caccttgcta gggaagtggc taagagaatc gcatcctccc ttacaggaga 1561 ccagcgtgta ggcctcgtcc cacgcaacgg cgtcgaccat tgggatgcgt acaaggggga 1621 gagggtcgtc ctatgggacg actatggaat gagcaatccc atccacgatg ctctcaggtt 1681 gcaagaactc gctgacactt gccccctcac tctaaactgt gacaggattg agaataaagg 1741 aaaggtcttt gacagcgatg tcatcattat caccactaat ctggccaacc cagcaccact 1801 ggactatgtc aactttgaag catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc 1861 ccctgaagtc gaaaaggcga agcgtgactt cccaggtcaa cctgacatgt ggaagaacgc 1921 cttcagttct gatttctcac acataaaact atcattggcc ccacaaggtg gcttcgacaa 1981 gaacgggaac accccacacg gaaggggcgt catgaagact ctcaccactg gctcccttat 2041 tgcccgggca tcagggctac tccatgagag gttagatgaa tttgagctac agggcccaac 2101 tctcgccacc ttcaatttcg atcgcaataa agtgcttgcc ttcagacaac ttgctgctga 2161 aaacaaatat gggttgatgg acacaatgaa agttgggaga cagctcaagg atgtcagaac 2221 catgccagaa ctcaaacaag ctctcaagaa tatctcaatc aagaagtgcc agatagtgta 2281 tagtggttgc acctacgtac ttgagtctga tggcaagggc aatgtgaaag ttgacagagt 2341 tcagagcgcc tccgtgcaga ccaacaatga gctgactggt gccctgcatc atttaaggtg 2401 cgccagaatc agatactatg ttaagtgtat ccaggaggcc ctgtattcca tcatccaaat 2461 tgctggggct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aagacctatg 2521 gtccaagcca caagtggaaa acacagagga gaacaccagc aaggacgggt gcccaaaacc 2581 caaagatgat gaggagtttg tcatttcatc cgacgacatc aaaactgagg gtaagaaagg 2641 gaagaacaag actggccgcg gcaaaaagca cacagccttt tcaagcaaag gtctcagtga 2701 tgaagagtac gatgagtaca agaggattag agaagaaagg aatggcaagt actccataga 2761 agagtacctt caggacaggg acaaatacta cgaggaggtg gccattgcca gggcgactga 2821 ggaagacttt tgtgaagagg aggaggccaa gatccggcaa agaatcttca gaccaacaag 2881 gaaacaacgc aaggaggaaa gagcttctct cggtctagtt acaggttctg aaattaggaa 2941 aagaaaccca gatgatttca aacccaaggg gaaactgtgg gctgacgatg acagaagcgt 3001 ggactacaat gagaaactca gttttgaggc cccaccaagc atctggtcga ggatagtcaa 3061 ctttggttca ggttggggat tctgggtctc ccctagcctg ttcataacat caacccatgt 3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aaacaaattc aggtacacaa 3181 gtcaggcgag ttctgccgct tgagattccc aaaaccaatc aggactgatg tgacgggcat 3241 gatcttagaa gaaggtgcac ccgagggcac cgtggtcaca ctactcatca aaaggtctac 3301 tggggaactc atgcccctag cagctaggat ggggacccat gcaaccatga aaatccaagg 3361 gcgcactgtt ggaggccaaa tgggcatgct tctgacagga tccaacgcca aaaacatgga 3421 tctgggtact acaccaggtg attgtggctg tccctacatc tacaagagag gaaacgatta 3481 tgtggtcatt ggagtccaca cggctgccgc tcgtggggga aacactgtca tatgtgccac 3541 ccaggggagt gagggagagg ctacacttga aggtggtgac aacaagggga catactgtgg 3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaagacca aattctggag 3661 gtcgtccaca gcatcactcc cgcctggcac ctatgaacca gcctatcttg gtggcaagga 3721 ccctagagtc aagggtggtc cttcactgca gcaagttatg agggaacagt tgaagccatt 3781 cacagagccc aggggcaagc caccaaagcc aagtgtgtta gaagctgcca agaaaaccat 3841 catcaatgtc cttgagcaga caattgatcc acctgagaaa tggtcattcg cacaagcttg 3901 cgcgtccctt gacaagacca cttccagtgg ccatccgcac cacatgcgga aaaacgactg 3961 ctggaacggg gagtccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat 4021 gtttgaagaa gggaagaaca tgaccccagt ctacacagct gcgcttaagg atgaattagt 4081 taaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggatttggc 4141 gaccatgatc cggtgtgctc gggcattcgg aggcctaatg gacgaactca aagcacactg 4201 tgtcacactc cccattagag ttggtatgaa catgaatgag gatggcccca tcatcttcga 4261 gaggcattcc aggtatacat atcactatga tgctgattac tctcgatggg attcaacaca 4321 acagagagcc gtgttggcag cagctctaga aatcatggtt aaattctccc cagaaccaca 4381 tttggctcag gtagtcgcag aagaccttct ttctcctagc gtggtggacg tgggtgactt 4441 cacaatatca atcaacgagg gtctcccctc tggggtgccc tgcacctccc aatggaactc 4501 catcgcccac tggcttctca ctctctgtgc gctctctgaa gttacaaact tgtcccctga 4561 caccatacag gccaattccc tcttctcttt ctatggtgat gatgaaattg ttagcacaga 4621 cataaaattg gacccagaga aattgacagc aaagcttagg gaatatgggt taaaaccaac 4681 ccgccctgac aaaactgaag gaccccttgt tatctctgaa gacttgaatg gcctgacttt 4741 cctgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagttc 4801 aatactcagg caaatgtact ggactagggg ctccaaccat gaagacccat ctgaaacaat 4861 gattccacac tcccaaagac ccatacaatt gatgtcccta ctgggggagg ccgcactcca 4921 cggcccagca ttctacagca aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg 4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 gtgacgccaa cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggcttt ggagcccgtt gttggtgccg ctatcgcggc acctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagtttacag 5281 tatcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttgggc cctgatttga 5341 atccctacct ttcccacttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc 5401 aggtaattct cgcggggaac gcgttcaccg ctggaaaaat tgtatttgca gcagtcccac 5461 caaatttccc aactgaaggc ttgagcccca gccaggtcac tatgttcccc catataatag 5521 tagatgttag gcaactggaa cctgtgttga tccccttacc cgatgttagg aataatttct 5581 atcattacaa tcaatcaaat gaccccacca tcaagttgat agcaatgttg tatacaccac 5641 ttagggctaa taatgctggg gaagatgtct tcacagtttc ttgtcgagtt ctcacgagac 5701 catcccccga ttttgatttc atatttttgg tgccacccac agttgagtca agaactaaac 5761 cattctctgt cccaatttta actgttgagg agatgaccaa ttcaagattc cccattcctt 5821 tggaaaagtt gttcacgggt cccagcagta ccattgttgt tcaaccacaa aatggcagat 5881 gcacgactga tggcgtgctc ctaggtacta cccaactgtc tcctgtcaac atctgcacct 5941 tcagagggga tgtcacccac attgcaggca ctcaagaata cacaatgaat ctggcctccc 6001 aaaactggaa caattacgac ccaacagaag aaatcccagc ccctctggga actccagatt 6061 tcgtgggaaa gatccaaggc gtgctcaccc aaaccacaag gagggatggc tcgacccgcg 6121 gtcacaaagc tacagtgagc actggaagtg tcaacttcac cccaaagctg ggcagaattc 6181 aattctccac tgatacaagc aatgactttg aaactggcca aagcacgaga ttcaccccag 6241 tcggtgttgt ccaggatggc agtaccaccc accaaaatga accccaacaa tgggtgctcc 6301 cagattattc aggtagggac agtcataatg tacacctagc ccctgccgtg gccccttctt 6361 ttccgggcga gcaacttctt ttcttcaggt ccactatgcc cggatgcagc gggtatccca 6421 acatgaattt ggattgccta ctcccccagg agtgggtgca gcacttctac caagaggcag 6481 ccccagcaca atctgatgtg gctctgctaa gatttgtgaa tccagataca ggtagggttc 6541 tgtttgagtg taagcttcat aagtcaggct atgttacagt ggctcacact ggccagcatg 6601 atttggttat cccccccaat ggctatttta gatttgattc ctgggtcaac cagttctaca 6661 cacttgcccc catgggaaat ggaacggggc gtagacgtgc attataatgg ctggagcttt 6721 ctttgctgga ttggcatctg atgtccttgg ctctggactt ggttccctaa tcaacgctgg 6781 ggctggggcc atcaaccaaa aagttgaatt tgaaaataat agaaaattgc aacaagcttc 6841 cttccaattt agcagcaacc tacaacaggc ttcctttcaa catgataaag agatgctcca 6901 agcacaaatt gaggccacca aaaagttaca gcaggaaatg atgaaagtta aacaggctat 6961 gctcctagag ggtgggttct ctgagacaga tgcagcccgt ggggctatca acgcccccat 7021 gacaaaggct ttggactgga gcggaacaag gtactgggct cccgatgcta ggagtacaac 7081 atacaatgca ggccgctttt ccacccctca accctcgggg gcactgccag gaagaactaa 7141 tcttagggct gctgtccccg ctcggggctc ctctaacaca ccttctaatt cttctattgc 7201 tacttctgtg tactcaaatc aaactgcttc aacgagactt ggttctacag ctggttctgg 7261 tgccagtgtc tcgagcctcc cgtcaactgc aaggactagg agctgggttg aggatcaaaa 7321 taggaatttg tcacctttca tgaggggggc ccacaacata tcgtttgtca ccccaccatc 7381 tagcagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg 7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga 7501 gtcacgggtg taatgtgaaa agacaaaatt gaatattctt cttttcttta gtgtctttt //