Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| EF187497 | GII.4 Yerseke | |
|
|---|---|---|---|
| GII.P4 Apeldoorn |
ORF1: 5..5104
ORF2: 5085..6707
ORF3: 6707..7513
LOCUS EF187497 7559 bp RNA linear VRL 06-FEB-2012
DEFINITION Norovirus Hu/GII.4/Kenepuru/NZ327/2006/NZL, complete genome.
ACCESSION EF187497
VERSION EF187497.2
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Kenepuru/NZ327/2006/NZL
ORGANISM Norovirus Hu/GII.4/Kenepuru/NZ327/2006/NZL
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7559)
AUTHORS Tu,E.T., Bull,R.A., Greening,G.E., Hewitt,J., Lyon,M.J.,
Marshall,J.A., McIver,C.J., Rawlinson,W.D. and White,P.A.
TITLE Epidemics of gastroenteritis during 2006 were associated with the
spread of norovirus GII.4 variants 2006a and 2006b
JOURNAL Clin. Infect. Dis. 46 (3), 413-420 (2008)
PUBMED 18177226
REFERENCE 2 (bases 1 to 7559)
AUTHORS Tu,E.T.-V., McIver,C.J., Bull,R.A., Lyon,M.J., Greening,G.E.,
Hewitt,J., Marshall,J.A., Rawlinson,W.D. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (15-DEC-2006) School of Biotechnology and Biomolecular
Sciences, University of New South Wales, Anzac Parade, Sydney, NSW
2052, Australia
REFERENCE 3 (bases 1 to 7559)
AUTHORS Eden,J.-S. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2012) School of Biotechnology & Biomolecular
Sciences, University of New South Wales, Anzac Parade, Sydney, NSW
2052, Australia
REMARK Sequence update by submitter
COMMENT On Feb 6, 2012 this sequence version replaced EF187497.1.
FEATURES Location/Qualifiers
source 1..7559
/organism="Norovirus Hu/GII.4/Kenepuru/NZ327/2006/NZL"
/mol_type="genomic RNA"
/strain="Hu/NZ327/2006/NZL"
/isolation_source="fecal specimen"
/db_xref="taxon:438974"
/geo_loc_name="New Zealand"
/note="genotype: GII.4"
5'UTR 1..4
CDS 5..5104
/note="ORF1"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="ABQ81515.2"
/translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE
ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LARVELAPLSLYWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYVLQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIASSLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLSLAPQGGFDKNGNTPHGRGVMKTLTTGSLIARA
SGLLHERLDEFELQGPTLATFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM
PELKQALKNISIKKCQIVYSGCTYVLESDGKGNVKVDRVQSASVQTNNELTGALHHLR
CARIRYYVKCIQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEENTSKDGC
PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKNMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6707
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="ABQ63283.2"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIVFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSTIVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGTQEYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRRDGSTRGHKATVSTGSVNFTPKLGRIQFSTDTSNDFETGQSTRFTPVGVVQDG
STTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPSFPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6707..7513
/note="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="AEZ56467.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARSTTYNAGRFSTPQPSGALPGRTNLRAAVPARGSSNTPS
NSSIATSVYSNQTASTRLGSTAGSGASVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
3'UTR 7514..7559
ORIGIN
1 gtgaatgaag atggcctcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggagtgct ttctagtatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcccaaac agcctccccc gagggaaata ccacaaagac ccccacgacc
181 acctactcca gaactggtta aaaatattcc ccctcccccg cccaacggag aggatgaaat
241 agtggtttct tatagtgtca aagatggtgt ttccggtttg cctgaccttt ctaccgtcag
301 gcaaccagaa gaatctaaca cggccttcag tgtccctcca ctcaatcaga gggagaatag
361 agatgctaag gagccactga ctggaacaat tctggaaatg tgggatggag aaatctacca
421 ttatggcctg tatgtggagc gaggtcttgt actgggtgtg cataaaccac cagctgccat
481 tagcctcgct agggtcgagc tagcaccact ctccttgtac tggagacctg tgtacactcc
541 tcagtacctc atctctccag acactctcaa gaaattacac ggagaaacgt tcccctacac
601 agcctttgac aacaattgct atgccttttg ttgctgggtc ctggatctaa atgactcgtg
661 gctgagcagg agaatgatcc agaggacaac tggtttcttc aggccctacc aagattggaa
721 taggaaaccc ctccccacta tggatgactc caaattaaag aaggtggcta acatattcct
781 gtgtgctctg tcttcgctat tcaccaggcc cataaaggat ataataggga agctaaggcc
841 tcttaacatc ctcaacatct tggcctcatg tgattggact tttgcaggca tagtggagtc
901 cctgatactc ttggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gattgccccc ttactaggtg actacgtgct gcaaggacct gaggatcttg cagtggagct
1021 cgtccctgta gtgatggggg gaattggttt ggtactagga ttcaccaaag agaagatagg
1081 aaaaatgctg tcatctgctg catccacctt gagagcttgt aaagaccttg gtgcatatgg
1141 gctagagatc ctaaagttgg tcatgaagtg gttcttcccg aagaaggagg aagcaaatga
1201 actggctata gtgagatcta tcgaggatgc agtcctggat ctcgaggcaa ttgaaaacaa
1261 ccatatgacc accttgctca aagacaaaga cagcctggca acctacatga gaacccttga
1321 ccttgaggag gagaaagcta ggaaactctc aaccaagtct gcttcacctg acattgtggg
1381 cacaatcaac gcccttctgg cgagaatcgc tgctgcacgt tctctggtgc atcgagcgaa
1441 ggaggaactt tccagcagac caagacctgt agtattgatg atatcaggca gaccaggaat
1501 agggaagacc caccttgcta gggaagtggc taagagaatc gcatcctccc ttacaggaga
1561 ccagcgtgta ggcctcgtcc cacgcaacgg cgtcgaccat tgggatgcgt acaaggggga
1621 gagggtcgtc ctatgggacg actatggaat gagcaatccc atccacgatg ctctcaggtt
1681 gcaagaactc gctgacactt gccccctcac tctaaactgt gacaggattg agaataaagg
1741 aaaggtcttt gacagcgatg tcatcattat caccactaat ctggccaacc cagcaccact
1801 ggactatgtc aactttgaag catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc
1861 ccctgaagtc gaaaaggcga agcgtgactt cccaggtcaa cctgacatgt ggaagaacgc
1921 cttcagttct gatttctcac acataaaact atcattggcc ccacaaggtg gcttcgacaa
1981 gaacgggaac accccacacg gaaggggcgt catgaagact ctcaccactg gctcccttat
2041 tgcccgggca tcagggctac tccatgagag gttagatgaa tttgagctac agggcccaac
2101 tctcgccacc ttcaatttcg atcgcaataa agtgcttgcc ttcagacaac ttgctgctga
2161 aaacaaatat gggttgatgg acacaatgaa agttgggaga cagctcaagg atgtcagaac
2221 catgccagaa ctcaaacaag ctctcaagaa tatctcaatc aagaagtgcc agatagtgta
2281 tagtggttgc acctacgtac ttgagtctga tggcaagggc aatgtgaaag ttgacagagt
2341 tcagagcgcc tccgtgcaga ccaacaatga gctgactggt gccctgcatc atttaaggtg
2401 cgccagaatc agatactatg ttaagtgtat ccaggaggcc ctgtattcca tcatccaaat
2461 tgctggggct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aagacctatg
2521 gtccaagcca caagtggaaa acacagagga gaacaccagc aaggacgggt gcccaaaacc
2581 caaagatgat gaggagtttg tcatttcatc cgacgacatc aaaactgagg gtaagaaagg
2641 gaagaacaag actggccgcg gcaaaaagca cacagccttt tcaagcaaag gtctcagtga
2701 tgaagagtac gatgagtaca agaggattag agaagaaagg aatggcaagt actccataga
2761 agagtacctt caggacaggg acaaatacta cgaggaggtg gccattgcca gggcgactga
2821 ggaagacttt tgtgaagagg aggaggccaa gatccggcaa agaatcttca gaccaacaag
2881 gaaacaacgc aaggaggaaa gagcttctct cggtctagtt acaggttctg aaattaggaa
2941 aagaaaccca gatgatttca aacccaaggg gaaactgtgg gctgacgatg acagaagcgt
3001 ggactacaat gagaaactca gttttgaggc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggttca ggttggggat tctgggtctc ccctagcctg ttcataacat caacccatgt
3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aaacaaattc aggtacacaa
3181 gtcaggcgag ttctgccgct tgagattccc aaaaccaatc aggactgatg tgacgggcat
3241 gatcttagaa gaaggtgcac ccgagggcac cgtggtcaca ctactcatca aaaggtctac
3301 tggggaactc atgcccctag cagctaggat ggggacccat gcaaccatga aaatccaagg
3361 gcgcactgtt ggaggccaaa tgggcatgct tctgacagga tccaacgcca aaaacatgga
3421 tctgggtact acaccaggtg attgtggctg tccctacatc tacaagagag gaaacgatta
3481 tgtggtcatt ggagtccaca cggctgccgc tcgtggggga aacactgtca tatgtgccac
3541 ccaggggagt gagggagagg ctacacttga aggtggtgac aacaagggga catactgtgg
3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaagacca aattctggag
3661 gtcgtccaca gcatcactcc cgcctggcac ctatgaacca gcctatcttg gtggcaagga
3721 ccctagagtc aagggtggtc cttcactgca gcaagttatg agggaacagt tgaagccatt
3781 cacagagccc aggggcaagc caccaaagcc aagtgtgtta gaagctgcca agaaaaccat
3841 catcaatgtc cttgagcaga caattgatcc acctgagaaa tggtcattcg cacaagcttg
3901 cgcgtccctt gacaagacca cttccagtgg ccatccgcac cacatgcgga aaaacgactg
3961 ctggaacggg gagtccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat
4021 gtttgaagaa gggaagaaca tgaccccagt ctacacagct gcgcttaagg atgaattagt
4081 taaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggatttggc
4141 gaccatgatc cggtgtgctc gggcattcgg aggcctaatg gacgaactca aagcacactg
4201 tgtcacactc cccattagag ttggtatgaa catgaatgag gatggcccca tcatcttcga
4261 gaggcattcc aggtatacat atcactatga tgctgattac tctcgatggg attcaacaca
4321 acagagagcc gtgttggcag cagctctaga aatcatggtt aaattctccc cagaaccaca
4381 tttggctcag gtagtcgcag aagaccttct ttctcctagc gtggtggacg tgggtgactt
4441 cacaatatca atcaacgagg gtctcccctc tggggtgccc tgcacctccc aatggaactc
4501 catcgcccac tggcttctca ctctctgtgc gctctctgaa gttacaaact tgtcccctga
4561 caccatacag gccaattccc tcttctcttt ctatggtgat gatgaaattg ttagcacaga
4621 cataaaattg gacccagaga aattgacagc aaagcttagg gaatatgggt taaaaccaac
4681 ccgccctgac aaaactgaag gaccccttgt tatctctgaa gacttgaatg gcctgacttt
4741 cctgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagttc
4801 aatactcagg caaatgtact ggactagggg ctccaaccat gaagacccat ctgaaacaat
4861 gattccacac tcccaaagac ccatacaatt gatgtcccta ctgggggagg ccgcactcca
4921 cggcccagca ttctacagca aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg
4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 gtgacgccaa cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggcttt ggagcccgtt gttggtgccg ctatcgcggc acctgtagcg ggccaacaaa
5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagtttacag
5281 tatcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttgggc cctgatttga
5341 atccctacct ttcccacttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc
5401 aggtaattct cgcggggaac gcgttcaccg ctggaaaaat tgtatttgca gcagtcccac
5461 caaatttccc aactgaaggc ttgagcccca gccaggtcac tatgttcccc catataatag
5521 tagatgttag gcaactggaa cctgtgttga tccccttacc cgatgttagg aataatttct
5581 atcattacaa tcaatcaaat gaccccacca tcaagttgat agcaatgttg tatacaccac
5641 ttagggctaa taatgctggg gaagatgtct tcacagtttc ttgtcgagtt ctcacgagac
5701 catcccccga ttttgatttc atatttttgg tgccacccac agttgagtca agaactaaac
5761 cattctctgt cccaatttta actgttgagg agatgaccaa ttcaagattc cccattcctt
5821 tggaaaagtt gttcacgggt cccagcagta ccattgttgt tcaaccacaa aatggcagat
5881 gcacgactga tggcgtgctc ctaggtacta cccaactgtc tcctgtcaac atctgcacct
5941 tcagagggga tgtcacccac attgcaggca ctcaagaata cacaatgaat ctggcctccc
6001 aaaactggaa caattacgac ccaacagaag aaatcccagc ccctctggga actccagatt
6061 tcgtgggaaa gatccaaggc gtgctcaccc aaaccacaag gagggatggc tcgacccgcg
6121 gtcacaaagc tacagtgagc actggaagtg tcaacttcac cccaaagctg ggcagaattc
6181 aattctccac tgatacaagc aatgactttg aaactggcca aagcacgaga ttcaccccag
6241 tcggtgttgt ccaggatggc agtaccaccc accaaaatga accccaacaa tgggtgctcc
6301 cagattattc aggtagggac agtcataatg tacacctagc ccctgccgtg gccccttctt
6361 ttccgggcga gcaacttctt ttcttcaggt ccactatgcc cggatgcagc gggtatccca
6421 acatgaattt ggattgccta ctcccccagg agtgggtgca gcacttctac caagaggcag
6481 ccccagcaca atctgatgtg gctctgctaa gatttgtgaa tccagataca ggtagggttc
6541 tgtttgagtg taagcttcat aagtcaggct atgttacagt ggctcacact ggccagcatg
6601 atttggttat cccccccaat ggctatttta gatttgattc ctgggtcaac cagttctaca
6661 cacttgcccc catgggaaat ggaacggggc gtagacgtgc attataatgg ctggagcttt
6721 ctttgctgga ttggcatctg atgtccttgg ctctggactt ggttccctaa tcaacgctgg
6781 ggctggggcc atcaaccaaa aagttgaatt tgaaaataat agaaaattgc aacaagcttc
6841 cttccaattt agcagcaacc tacaacaggc ttcctttcaa catgataaag agatgctcca
6901 agcacaaatt gaggccacca aaaagttaca gcaggaaatg atgaaagtta aacaggctat
6961 gctcctagag ggtgggttct ctgagacaga tgcagcccgt ggggctatca acgcccccat
7021 gacaaaggct ttggactgga gcggaacaag gtactgggct cccgatgcta ggagtacaac
7081 atacaatgca ggccgctttt ccacccctca accctcgggg gcactgccag gaagaactaa
7141 tcttagggct gctgtccccg ctcggggctc ctctaacaca ccttctaatt cttctattgc
7201 tacttctgtg tactcaaatc aaactgcttc aacgagactt ggttctacag ctggttctgg
7261 tgccagtgtc tcgagcctcc cgtcaactgc aaggactagg agctgggttg aggatcaaaa
7321 taggaatttg tcacctttca tgaggggggc ccacaacata tcgtttgtca ccccaccatc
7381 tagcagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg
7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga
7501 gtcacgggtg taatgtgaaa agacaaaatt gaatattctt cttttcttta gtgtctttt
//