Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| DQ456824 | GII.2 | |
|
|---|---|---|---|
| GII.P2 |
ORF1: 5..5104
ORF2: 5085..6713
ORF3: 6713..7492
LOCUS DQ456824 7536 bp RNA linear VRL 11-SEP-2012
DEFINITION Norovirus Hu/MK04/2004/JP, complete genome.
ACCESSION DQ456824
VERSION DQ456824.1
KEYWORDS .
SOURCE Norovirus Hu/MK04/2004/JP
ORGANISM Norovirus Hu/MK04/2004/JP
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7536)
AUTHORS Hansman,G.
TITLE Direct Submission
JOURNAL Submitted (16-MAR-2006) Virology II, NIID, 4-7-1 Gakuen,
Musashimurayama, Tokyo 208-0011, Japan
REFERENCE 2 (bases 1 to 7536)
AUTHORS Hansman,G.
TITLE Direct Submission
JOURNAL Submitted (11-SEP-2012) Virology II, NIID, 4-7-1 Gakuen,
Musashimurayama, Tokyo 208-0011, Japan
REMARK Amino acid sequence updated by submitter
FEATURES Location/Qualifiers
source 1..7536
/organism="Norovirus Hu/MK04/2004/JP"
/mol_type="genomic RNA"
/strain="Hu/MK04/2004/JP"
/isolation_source="stool specimen"
/db_xref="taxon:379081"
/country="Japan: Tokyo"
CDS 5..5104
/note="ORF1"
/codon_start=1
/product="polyprotein"
/protein_id="ABE41640.1"
/translation="MKMASNDASAAAAVNSNNDNTKSSSDGMFNNVAVTLKRALGARS
KQPAPREKPPRPPRPPTPELIKRIPPPPPNDGDEPTVMFSTVGGVSGLPELTTVGQPP
EANTAFSVPPLSQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
IAKVELTPLSLYWRPVYTPQYLISPDTLRKLHGELFPYTAFENNCYAFCCWVLDLNDS
WLSRRMISRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIVLCALSSLFTRPIKDIIGK
LKPLNILNILASCDWTFAGIVESLILLAELFDVFWTPPDVSAMIAPLLGDYELQGPED
IAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKDEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKNSLAAYMKTLDMEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGKPGIGKTHLAREL
AKKIASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLVNPAPLDYVNFEACSRRIDFLVYADAPEVEK
AKRDFPGQPDMWKDAYRSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTASSLVARA
SGLLHERLDEYELQGPPLSTFNFDRNKIAAFRQLAAENKYGLVDTMRVGNQLRNVTTM
DELKKAIKNIIIRKCQIVYGGNTYTLESDGKGKVVVERVQSASVQINNEIAGAVHHLR
CARIRYYVKCVQEAIYSLLQIAGTVFVTSRIISRMNIQNLWSRPLTEDADEATMKEGC
PKPREEEEFVVSSDDIKPEGKKGKNKSGRGKKHTAFSSKGLSDEEYEEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEVKIRQRIFRPTRKQRKEERANLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERISFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGITEAFGVPIRQVQIHKSGEFCRLRFPKPIRTDVSGMILEEGAPEG
TVATILIKRTTGELMPLAARMGTHATMRIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGNAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNEHW
NGESFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKVYGKIKKRLLWGSDL
ATMVRCARSFGGLMDELKAHCVTLPIRVGMNMNEDGPIVFEKHSRYRYHYDADYSRWD
STQQRAVLAAAMEIMVKFSAEPQLAQIVAEDLLSPSVVDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTDLSPDIVQANSLFSFYGDDEIVSTDIKLDPEKLTGKLR
EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQLYWTKGP
NHEDPFESMIPHSQRPIQLMSLLGEAALHEPSFYSKISKLVISELKESGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSLVNEDGVE"
CDS 5085..6713
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="ABE41641.2"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
VISQRDKHNSPGHNEPANRGHDAVVPTYTSQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 6713..7492
/note="ORF3"
/codon_start=1
/product="unknown"
/protein_id="ABE41642.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQRLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGRFTPTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSNSTRSTNLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc tgctgccgct gctgttaaca gcaacaacga
61 caacacaaaa tcttcaagtg acggaatgtt taacaacgtg gccgtcaccc ttaaacgagc
121 cctcggggcc cggtccaaac agccggcccc gagggaaaaa cccccaagac cccctagacc
181 accaacacca gaactaatca aaagaattcc ccccccacca cccaatgatg gggacgaacc
241 aaccgtgatg tttagcactg taggtggtgt gtctggccta cctgagctca caacagtcgg
301 tcaaccacct gaagctaaca cggcctttag tgtgcctccc ctcagccaaa gggaaaacag
361 ggacgctaag gaaccgctaa ctggaactat tctggaaatg tgggatgggg agatctatca
421 ttatggactg tatgtggaaa gagggcttgt gttaggcgtg cacaagccgc cagctgccat
481 cagcatagcc aaagtggaat taacgcccct ctcactgtat tggagacctg tgtacacgcc
541 tcagtacctt atatcccctg acaccttgag gaaactccat ggtgaattgt ttccctatac
601 agcctttgaa aacaactgtt atgccttctg ctgttgggtt ttggatctta acgattcatg
661 gctaagcagg aggatgatta gtaggaccac cggctttttc aggccctacc aagagtggaa
721 caggaagccc cttccaacta tggatgactc aaaattgaag aaggtcgcaa acatcgttct
781 gtgtgcattg tcatcattgt tcactagacc catcaaggat ataattggca aacttaaacc
841 cctcaacatc ctaaacattc tggcctcatg cgattggact ttcgctggca tagtagagtc
901 actaatcctc ttggctgaac tctttgatgt gttctggaca cccccagatg tgtctgcaat
961 gatcgcaccc ctcctcggtg actacgagct acaaggcccc gaagacatcg ctgtggagct
1021 cgtgcccgtt gtgatgggtg ggataggtct ggtgttggga ttcaccaaag agaaaatagg
1081 taagatgctc tcctctgcag cgtcaaccct gagggcatgc aaagatcttg gagcctatgg
1141 attggagatc ttgaaactag tcatgaaatg gtttttccca aagaaggatg aggccaacga
1201 actggctatg gttagagcca ttgaagacgc tgtattagac ctggaggcca ttgagaacaa
1261 ccatatgacc actctattga aagacaagaa cagccttgca gcctacatga agaccttgga
1321 catggaagag gaaaaagcta ggaagttatc caccaaatca gcctcccctg acattgtggg
1381 caccataaac gccctgctgg ctaggatcgc cgccgcgcgt tccttagttc atagggccaa
1441 ggaggagctc tctagcagac caagaccggt cgttctgatg atctctggca aaccagggat
1501 aggaaagacc cacttggcca gagaactggc aaagaaaatt gcctcgacgc tcacaggaga
1561 tcagagggtg ggcctcatcc cacggaatgg agttgaccac tgggacgcct acaaaggtga
1621 gagagtggtg ctctgggatg actacgggat gagcaacccc atccacgatg cgctgaggtt
1681 gcaggaactg gcagacacat gtccattaac tttaaattgt gacaggattg aaaacaaggg
1741 gaaagtcttc gatagcgacg cgatcataat taccaccaat ttggtcaatc ccgcgccgct
1801 ggattacgtc aactttgagg cctgctccag acgtatagac ttccttgtgt atgctgatgc
1861 cccagaagtc gagaaggcaa agcgggactt ccctggtcaa ccggacatgt ggaaggacgc
1921 ctatcgctct gacttctcac acattaaact acaacttgca ccacagggtg ggtttgacaa
1981 aaatggaaac accccacatg gtaaaggagt gatgaagact ctcactgcca gttcactggt
2041 tgcacgtgcc tctggtctct tgcacgagag attagatgag tacgagctac agggtccgcc
2101 cctctcaacc ttcaactttg accgcaacaa aattgcagcg ttcaggcaac tcgccgctga
2161 aaataagtat ggtctggtgg acacgatgag ggtgggcaac cagctcagaa atgttacgac
2221 catggatgaa ctcaagaagg ctatcaagaa catcataatc agaaagtgcc agatagtcta
2281 cggtggtaac acttacacgc ttgagtctga cggcaagggt aaggttgtgg ttgagagggt
2341 gcagagcgcc agcgtgcaaa tcaacaatga gatcgctggt gcagtacacc accttagatg
2401 tgccaggata aggtattatg tcaagtgtgt ccaagaggcc atctactcac tcctccaaat
2461 cgccggcacg gtgtttgtca cttcacgcat cataagccgc atgaacatcc aaaatttatg
2521 gtccaggcca ctaaccgaag atgcagatga ggccactatg aaagaggggt gccccaaacc
2581 tagggaagaa gaggaatttg tcgtctcctc agatgacatc aagccagagg gcaagaaagg
2641 taaaaacaag agtggccggg gcaagaaaca cacggcattc tcaagcaaag gtctcagtga
2701 tgaggagtac gaagagtaca aaaggatcag agaggagaga aatggcaagt actccataga
2761 ggaataccta caggacagag acaaatacta tgaagaggtg gccattgcca gggcaactga
2821 agaagacttc tgtgaagagg aagaggttaa gattcgtcag aggatcttca ggccaacaag
2881 aaaacaacgc aaggaagaaa gagccaacct tggcctcgtt accgggtctg agatcagaaa
2941 gaggaaccca gatgacttca aaccaaaagg aaaactgtgg gccgacgatg ataggagcgt
3001 cgactacaat gaaagaatca gctttgaggc cccaccaagt atatggtcta gaattgtcaa
3061 ctttggttct ggatgggggt tttgggtgtc acctagcctc ttcataacat caacacatgt
3121 catacctcaa ggcataactg aggcctttgg tgtacctata aggcaggtgc aaatacacaa
3181 atcaggcgaa ttctgtcgcc tgagattccc aaaacccatc aggacagatg tgtcaggtat
3241 gatactggag gagggagcgc ctgaaggcac tgttgccacc atactcatca aaagaaccac
3301 tggagagctg atgcctctcg cagcaagaat gggcacccac gcgaccatga ggatacaagg
3361 acgcacggtg ggcggccaga tgggaatgct gctcactggg tccaatgcaa agagcatgga
3421 tcttggcacc acgcccggtg attgtgggtg tccctacatt tacaaaaggg gcaacgacta
3481 catagtcatt ggagttcaca cagcagccgc tcgtggcgga aacactgtca tctgcgccac
3541 acagggtagt gagggtgagg ccacgctcga gggtggtgac aacaaaggaa catactgtgg
3601 ggcgccaatc ctaggccccg ggaatgcccc aaaactgagc accaaaacca aattctggag
3661 gtcctccaca acaccacttc cacccggcac atacgagccg gcgtatctgg gaggaaaaga
3721 cccccgagtc aaaggtgggc catctctgca acaagttatg cgagaccaac tgaagccatt
3781 caccgaaccc cgtggtaagc caccaaaacc aagtgtcctc gaagctgcta aaaagacaat
3841 tatcaatgtg ctagagcaaa caatagaccc cccacaaaag tggtcgtacg cacaagcgtg
3901 cgcgtctctt gacaaaacta catctagtgg gtacccccac cacgtgcgca aaaacgagca
3961 ctggaatggg gaatctttca caggaaaatt ggctgaccag gcatcaaaag caaacctaat
4021 gtttgaagag gggaagcaca tgaccccagt ttacacagct gcccttaagg atgaattggt
4081 caaaactgag aaagtgtatg ggaagataaa gaagaggttg ctttggggct ctgacctggc
4141 taccatggtg cggtgcgcgc gctcctttgg cggtttgatg gacgaactca aggcccactg
4201 tgtgacactt ccgataaggg ttggcatgaa tatgaatgaa gatggaccaa tagtctttga
4261 gaagcactcc agatacaggt atcactatga tgcagattat tccaggtggg attcaacaca
4321 gcagagagcc gttctggccg cggccatgga gattatggtt aaattctcag cagagccaca
4381 actagcccaa atagttgcag aggatctatt gtcgcctagc gtagttgacg tgggcgactt
4441 caaaatttcc atcaacgaag gattgccgtc gggtgtccct tgcacctctc aatggaattc
4501 catcgcacac tggctcctca ccttatgtgc cctttctgaa gttacagacc tctctcctga
4561 cattgtgcag gccaactccc tcttctcctt ttatggtgat gatgaaattg tgagcacaga
4621 tatcaaatta gacccagaaa agttgacggg gaagttgaga gaatatggcc tcaaacccac
4681 tcgtccagac aaaactgaag gccccctgat cattagtgag gatctgaatg gcctgacttt
4741 cctgaggaga accgtcactc gcgaccctgc aggatggttt ggcaaactgg accaaagttc
4801 catacttagg caactgtatt ggaccaaagg ccccaatcat gaagatccct ttgagtcaat
4861 gattccacac tcccagagac ccatacaact catgtcactc ttgggcgaag cagcactgca
4921 tgaaccatca ttctacagca agatcagcaa gcttgtgata tctgagttga aagaaagtgg
4981 aatggatttt tacgtgccca ggcaagaacc tatgttcagg tggatgagat tctcagattt
5041 gagcacgtgg gagggcgatc gcaatcttgc tcccagtctt gtgaatgaag atggcgtcga
5101 atgacgccgc tccatctact gatggtgcag ccggcctcgt gccagaaagt aataatgagg
5161 tcatggctct tgaacccgtg gctggcgccg ccttggcagc cccggtcacc ggtcaaacaa
5221 atattataga cccttggatt agagcaaatt ttgtccaggc ccctaatggt gaatttacag
5281 tctctccccg taatgcccct ggtgaagtgc tattgaatct agagttgggt ccagaattaa
5341 atccttatct ggcacattta gcaagaatgt acaacgggta tgccggtggg atggaggtgc
5401 aggtcatgtt ggctgggaac gcgttcacag ccggcaagtt ggtcttcgcc gctgtgccac
5461 ctcacttccc ggttgaaaac cttagtccac agcaaattac catgttccct catgtgatta
5521 tagatgtaag gactttggaa cctgttttat taccactccc tgatgttaga aataatttct
5581 tccattataa tcagaaagat gatcccaaga tgagaattgt ggctatgctt tatacccccc
5641 ttaggtctaa tggttcaggt gatgatgtgt ttacagtctc ctgcagggtg ttgactagac
5701 cctcccctga ttttgatttc acatatctgg tgccaccaac agtggagtct aaaacaaaac
5761 catttaccct cccaatcctc acacttgggg aactttccaa ttctagattc ccagtgtcca
5821 tagaccagat gtacaccagc cccaatgaag ttatatcagt gcagtgtcaa aatggtaggt
5881 gcacactgga tggggagctc caaggaacaa cacaactcca agtcagtggt atttgtgctt
5941 tcaagggaga agtgaccgcc catttgcatg acaatgatca tctatataat gtcaccatca
6001 caaacttgaa tgggtccccc tttgacccct ccgaggacat ccctgcccct ctgggcgtac
6061 ctgactttca gggaagggtc tttggtgtca tctcccaaag agacaaacac aattcccctg
6121 gacataatga accagcaaat agggggcacg acgctgtggt ccctacttac acatcacagt
6181 acactccaaa attgggtcag attcaaattg gcacatggca aaccgatgat cttacagtca
6241 accaaccagt caaattcacc ccagttggac tcaatgacac tgaacatttt aaccaatggg
6301 tggtccccag atatgctggt gctctaaacc ttaacacaaa ccttgcccct tctgttgctc
6361 cagtatttcc aggggagcgc ctgctctttt tcagatcata catccccctc aagggtggtt
6421 atggaaatcc agccattgat tgcctactac cacaagagtg ggtgcagcat ttctatcagg
6481 aagcagcccc ttcaatgagt gaggtggccc ttgtcagata catcaacccg gatactggtc
6541 gggcactgtt tgaggccaag ctccacagag ctggtttcat gacagtctca agcaacacca
6601 gtgccccggt ggttgtgcct gccaacggat acttcagatt tgattcttgg gtgaaccaat
6661 tctattctct cgcccccatg ggaactggaa atgggcgtag aagggttcaa taatggctgg
6721 agcttttgta gctggtcttg caggggacgt gctcagcaat gggctcagtt cattaattaa
6781 tgcaggtgct aatgcaataa atcagagggc agaatttgat tttaatcaga gattacagca
6841 aaattctttt aatcatgata aggaaatgtt gcaggctcag attcaggcaa ctaagcagct
6901 gcaggcagac atgatggcta taaagcaggg ggtcctgacc gctggcggct tttcccctgc
6961 tgacgcagcc agaggtgctg tgaatgcgcc catgacacag gcgctggatt ggaacggcac
7021 aaggtattgg gcaccaggct ccatgaggac cacatcttac tctggaagat tcacaccaac
7081 cgccccagtg aggcaggccg acttccagca cacccaaagc cggccctcga gtggctcttc
7141 tgtgtcctcc tttgctactc agtcttcaag gccaactctg actacaacca ctgggtcctc
7201 acatggcaca gcctcatcaa actcgactcg cagcacaaac ctctcccaat caacggtctc
7261 tagggccaca tctaggactg gtgagtgggt tagagatcaa aatagaaatt tggaacccta
7321 tatgcatggt gccttacaga cagcctttgt caccccacct tccagcaggg cgtctgacgg
7381 aacggtctca accgtcccaa aaggtgtttt ggactcctgg acacctgcgt tcaacacccg
7441 caggcagccg ctttttgcac acctccgtaa gaggggggag tcacaagctt agtgaaaagg
7501 tgaaaattta tctaaaatga attgatctta cctttt
//