Typing tool
|
Complete norovirus genomes
DQ415279 | GII.4 Farmington Hills | ||
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GII.P4 Farmington Hills |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7513LOCUS DQ415279 7559 bp RNA linear VRL 27-JUN-2007 DEFINITION Norovirus Hu/GII/Carlow/2002/Ire putative polyprotein, putative capsid protein, and putative minor structural protein genes, complete cds. ACCESSION DQ415279 VERSION DQ415279.1 KEYWORDS . SOURCE Norovirus Hu/GII/Carlow/2002/Ire ORGANISM Norovirus Hu/GII/Carlow/2002/Ire Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7559) AUTHORS Kearney,K., Menton,J. and Morgan,J.G. TITLE Carlow virus, a 2002 GII.4 variant Norovirus strain from Ireland JOURNAL Virol. J. 4, 61 (2007) PUBMED 17567897 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7559) AUTHORS Kearney,K. and Morgan,J.G. TITLE Direct Submission JOURNAL Submitted (23-FEB-2006) Microbiology, University College Cork, College Road, Cork, Ireland FEATURES Location/Qualifiers source 1..7559 /organism="Norovirus Hu/GII/Carlow/2002/Ire" /mol_type="genomic RNA" /strain="Hu/GII/Carlow/2002/Ire" /db_xref="taxon:375425" CDS 5..5104 /codon_start=1 /product="putative polyprotein" /protein_id="ABD73935.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARS KQPPPRETPQRPPRPPTPELVKKIPPPPPNGEDEIVVSYSVKDGVSGLPELSTVRQPE EANTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVDRGLVLGVHKPPAAIS LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTVDDSKLKKVANIFLCALSSLFTRPIKDIIGK LKPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTM PELKQALKNISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTSNELTGALHHLR CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEEVTNKDGC PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERTSLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYRYHYDADYSRWD STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5085..6707 /codon_start=1 /product="putative capsid protein" /protein_id="ABD73936.1" /translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHVIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGTHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGRIQGML TQTTRGDGSTRGHKATVSTGDVHFTPKLGSIQFNTDTNNDFETGQNTKFTPVGVVQDG NGTHQNEPQQWVLPSYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6707..7513 /codon_start=1 /product="putative minor structural protein" /protein_id="ABD73937.1" /translation="MAGAFFAGLASDVLGSGLGSLISAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMEVKRAMLLEGGFSETDASRGAIN APMTKALDWSGTRYWAPDARATTYNAGRFSTPQPSGALPGRTNPRATVPVRGFSSAPS NTSTATSVYSNQTVSTRLGSTAGSGTGVSSLPSTARTRSWIEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga 61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc 121 cctcggggcg cggtctaaac agccccctcc gagggaaaca ccacaaagac ccccacgacc 181 acctactcca gaactggtta aaaagatccc tcctcccccg cccaacggag aggacgaaat 241 agtggtttct tatagtgtca aagatggcgt ttccggtttg cctgagcttt ccaccgttag 301 gcaaccggaa gaagctaata cggccttcag tgtccccccg ctcaatcaga gggagaatag 361 ggatgctaag gagccactga ctggaacaat tctggaaatg tgggatgggg aaatctacca 421 ttacggcctg tatgtggatc gaggtcttgt actaggcgtg cacaaaccac cagctgccat 481 tagcctcgcc aaggtcgaac taacaccact ctccttgttc tggagacctg tgtatactcc 541 tcagtacctc atctctccag acactctcaa gaaattacac ggagaaacgt tcccttacac 601 agcctttgac aacaattgct atgccttttg ctgctgggtc ctggacctaa acgactcgtg 661 gctgagtagg agaatgatcc agagaacaac tggcttcttc agaccctacc aagattggaa 721 taggaaaccc ctccccactg tggatgattc caagttaaag aaggtagcta atatattcct 781 gtgtgctctg tcttcgctgt tcaccaggcc cataaaagac ataataggga agctaaagcc 841 tcttaacatc ctcaacatct tggcctcatg tgattggact ttcgcaggca tagtggagtc 901 cttgatactc ctggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttactcggtg actacgagtt acaaggaccc gaggaccttg cagtggagct 1021 cgtccctgta gtgatggggg gaattggttt ggtgctggga ttcaccaaag agaagattgg 1081 aaaaatgttg tcatctgctg cgtccacctt gagagcttgc aaagatcttg gtgcatatgg 1141 gctagagatc ctaaagttgg tcatgaagtg gttcttcccg aagaaagagg aagcaaatga 1201 actggctatg gtgagatcca tcgaggatgc agtgctggac ctcgaggcaa ttgaaaacaa 1261 ccatatgacc accttgctca aagacaaaga cagtctggca acctacatga gaacccttga 1321 ccttgaggag gagaaagcca gaaaactctc aaccaagtct gcttcacctg acatcgtggg 1381 cacaatcaac gccctcctgg cgagaatcgc tgctgcacgt tccctggtgc atcgagcgaa 1441 ggaggagctt tccagcagac caagacctgt agtcttgatg atatcaggca gaccaggaat 1501 agggaagacc caccttgcta gggaagtggc taagagaatc gcagcctccc tcacaggaga 1561 ccagcgtgta ggcctcatcc cacgcaatgg cgtcgatcac tgggatgcgt acaaggggga 1621 gagggtcgtc ctatgggacg actatggaat gagcaatccc atccacgacg ccctcaggtt 1681 gcaagaactc gctgacactt gccccctcac cctaaactgt gacaggattg agaataaagg 1741 aaaggtcttt gacagcgatg tcatcattat cactactaac ctggccaacc cagcaccact 1801 ggactatgtc aactttgaag catgctcgag gcgcatcgat ttcctcgtgt atgcagaagc 1861 ccctgaagtc gaaaaggcga agcgtgactt cccaggccaa cctgacatgt ggaagaacgc 1921 ctttagttct gatttttccc acataaaact agcactggct ccacagggtg gcttcgataa 1981 aaacgggaac accccgcacg ggaagggcgt catgaagact ctcaccactg gctcccttat 2041 tgcccgggca tcagggctac tccatgagag gctagatgag tttgaactac agggcccagc 2101 tctcaccacc ttcaactttg atcgcaacaa agtgcttgcc tttaggcaac ttgctgctga 2161 aaacaaatat gggttgatgg acacaatgag agttgggagg cagctcaagg atgtcagaac 2221 catgccagag cttaaacaag cactcaagaa tatctcaatc aagaagtgcc agatagtgta 2281 cagtggttgc acctacacac ttgagtctga cggcaagggc aatgtgaaag ttgacagagt 2341 tcagagcacc tccgtgcaga ccagcaatga gctgactggc gccctgcacc acctaaggtg 2401 tgccagaatc aggtactatg tcaggtgtgt ccaggaggcc ctgtattcca tcatccagat 2461 tgctggggct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aagacctatg 2521 gtccaagcca caagtggaaa acacagagga ggttaccaac aaggacgggt gcccaaaacc 2581 caaagatgat gaggagttcg tcatttcatc cgacgacatt aaaactgagg gtaagaaagg 2641 gaagaacaag actggtcgcg gcaagaagca cacagccttc tcaagcaaag gtctcagtga 2701 tgaagagtat gatgagtaca agaggattag agaagagagg aatggcaagt attccataga 2761 agagtacctc caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgaccga 2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttta ggccaacaag 2881 aaaacaacgc aaggaggaaa gaacttctct cggtttagtc acaggttctg aaattaggaa 2941 aagaaaccca gatgatttca agcccaaggg gaaactgtgg gctgacgatg acagaagtgt 3001 ggactacaat gagaaactca gctttgaggc cccaccaagc atctggtcga ggatagtcaa 3061 ctttggttca ggttggggct tctgggtctc ccccagtctg ttcataacat caacccatgt 3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aaacaaattc aggtacacaa 3181 atcaggcgaa ttctgtcgct tgagattccc aaaaccaatc aggactgatg tgacgggtat 3241 gatcttagaa gaaggtgcgc ccgaaggcac cgtggtcaca ctactcataa aaaggtctac 3301 aggagaactc atgcccctag cagctagaat ggggacccat gcaaccatga aaattcaagg 3361 gcgcactgtt ggaggtcaga tgggcatgct tctgacagga tctaacgcca aaagcatgga 3421 cctaggcacc acaccaggtg attgcggctg tccctacatc tacaagaggg gaaatgacta 3481 tgtggtcatt ggagtccaca cggctgccgc tcgtggggga aacactgtca tatgtgccac 3541 ccaggggagt gagggggagg ctacacttga aggtggtgac agtaagggaa catactgtgg 3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaagacca aattctggag 3661 atcgtccaca gcaccactcc cacctggcac ctatgaacca gcctatcttg gtggcaagga 3721 ccccagggtc aagggtggcc cttcattgca gcaagtcatg agggatcagt tgaaaccatt 3781 tacagagccc aggggaaagc caccaaagcc aagtgtgtta gaagctgcca agaaaaccat 3841 catcaatgtc cttgagcaaa caattgatcc acctgagaaa tggtcattcg cacaagcttg 3901 cgcgtccctc gacaagacca cttccagtgg ccatccgcac cacatgcgga aaaacgactg 3961 ctggaacggg gaatccttca caggcaagct ggcagatcag gcttccaagg ccaacctgat 4021 gttcgaagaa gggaagaaca tgaccccagt ctacacaggt gcgcttaagg atgaattggt 4081 caaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggatttagc 4141 gaccatgatc cgatgtgctc gagcattcgg aggcctaatg gatgaactca aagcacactg 4201 tgttacactt cctatcagag ttggtatgaa tatgaatgag gatggcccca tcatattcga 4261 gaggcactcc aggtacagat atcactatga tgctgattac tctcgttggg attcaacaca 4321 acagagagct gtgttggcag cagctctaga aatcatggtt aaattctcct cagaaccaca 4381 tttggctcag gtagtcgcag aagaccttct ttctcctagc gtggtggatg tgggtgactt 4441 cacaatatca atcaacgagg gtctcccctc tggggtaccc tgcacctccc aatggaactc 4501 catcgcccac tggcttctca ctctctgtgc gctctctgaa gtcacaaatc tgtcccctga 4561 catcatacag gctaattccc tcttctcctt ttatggtgat gatgaaatcg ttagcacaga 4621 cataaaattg gacccagaga aattgacagc aaagctcagg gaatatgggc tgaaaccaac 4681 tcgccctgac aaaactgaag gaccccttgt tatctctgaa gacttaaatg gtctgacttt 4741 cctgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagttc 4801 aatactcagg caaatgtact ggactagggg ccccaatcat gaagacccat ctgaaacaat 4861 gattccacac tcccaaagac ccatacagtt gatgtcctta ctgggagagg ccgcactcca 4921 cggcccagca ttctacagca aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg 4981 catggatttt tacgtgccca ggcaagagcc aatgttcaga tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 atgacgccaa cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggcttt ggagcccgtt gttggtgccg ctattgcggc acctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagtttacag 5281 tgtcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttgggc cctgatctga 5341 atccctacct ttctcattta gccagaatgt acaatggcta tgcaggtggc tttgaagtgc 5401 aggtaatcct tgcggggaat gcgttcaccg ccgggaaaat catatttgca gcagtcccac 5461 caaatttccc aactgaaggc ttaagcccca gccaggtcac tatgttcccc catgtaatag 5521 tagatgttag gcaactggaa cctgtgttga tccccttacc tgatgttagg aacaatttct 5581 atcactacaa ccaatcaaat gaccccacca ttaaattgat agcaatgctg tacacaccac 5641 ttagggctaa taatgctggg gaagatgtct tcacagtctc ttgtcgagtc ctcacgaggc 5701 catcccccga ttttgatttc atatttttgg tgccacccac agttgagtca agaactaaac 5761 cattcaccgt cccaatttta actgttgagg aaatgaccaa ttcaagattc cctattcctt 5821 tggaaaagtt gttcacgggt cctagtggtg cctttgttgt tcaaccacaa aatggcaggt 5881 gtacgactga tggcgtgctc ttaggcacta cccaactgtc tcctgtcaac atctgcacct 5941 tcagagggga tgtcacccat attgcaggta ctcataatta cacaatgaat ttggcttctc 6001 aaaattggaa caattatgac ccaacagaag aaatcccagc ccctctgggg accccagatt 6061 tcgtgggaag gatccaaggc atgctcaccc aaactacaag gggagatggc tctacccgcg 6121 gccacaaagc tacagtgagc actggggatg tccacttcac cccaaagctg ggcagtattc 6181 agttcaacac tgatacaaac aatgattttg aaactggtca aaacacgaaa ttcaccccag 6241 tcggtgttgt ccaggatggt aatggtaccc accaaaatga acctcaacaa tgggtgctcc 6301 caagctactc aggtagaact ggccataatg tacacctagc ccccgccgta gcccccactt 6361 ttccgggtga gcaacttctt ttcttcaggt ccactatgcc cggatgcagc gggtacccca 6421 acatgaattt ggattgtcta ctcccccagg aatgggtgca gcacttctac caagaggcag 6481 ctccagcaca atctgatgtg gctctgctaa gatttgtgaa tccagacaca ggtagggttc 6541 tatttgagtg caagcttcat aaatcaggct atgtcacagt ggctcacact ggccagcatg 6601 atttggttat cccccccaat ggctacttta gatttgactc ctgggtcaac caattctaca 6661 cacttgcccc catgggaaat gggacggggc gtagacgtgc attataatgg ctggagcttt 6721 cttcgccggg ctggcatctg atgtccttgg ctctggactt ggttccctaa tcagtgctgg 6781 ggctggggcc atcaaccaaa aagttgaatt tgaaaataac agaaaattgc aacaagcttc 6841 cttccaattt agtagcaatc tacaacaggc ttcctttcag catgataaag agatgctcca 6901 agcacaaatt gaggccacta aaaagttgca acagggtatg atggaagtta aacgggcaat 6961 gctcctagag ggtggattct ctgaaacaga tgcatcccgt ggggcaatca acgcccccat 7021 gacaaaggct ttggactgga gcggaacaag gtactgggct cctgatgcta gggctacaac 7081 atacaatgca ggccgctttt ccacccctca gccctcgggg gcactgccag gaaggaccaa 7141 tcccagggct actgtccccg ttcggggctt ctccagtgca ccttctaata cttctactgc 7201 tacttctgtg tattcaaatc aaactgtttc aacgagactt ggttctacag ctggttctgg 7261 caccggtgtc tcgagtctcc cgtcaactgc aaggactagg agctggattg aggatcaaaa 7321 caggaatttg tcacctttca tgaggggagc tcacaacata tcgtttgtca ccccaccatc 7381 tagtagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg 7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga 7501 gtcacgggcg taatgtgaaa agacaaaatt gattatcttt cctttcttta gtgtctttt //