Typing tool
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Typing tool
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Complete norovirus genomes
| DQ379715 | GII.9 | |
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| GII.P7 |
ORF1: 1..1402
ORF2: 1383..2996
ORF3: 2996..3763
LOCUS DQ379715 3814 bp RNA linear VRL 28-MAY-2007
DEFINITION Norovirus Hu/GII/Goulburn Valley G5175 C/1983/AUS nonstructural
polyprotein (ORF1) gene, partial cds; and capsid (ORF2) and basic
protein (ORF3) genes, complete cds.
ACCESSION DQ379715
VERSION DQ379715.1
KEYWORDS .
SOURCE Norovirus Hu/GII/Goulburn Valley G5175 C/1983/AUS
ORGANISM Norovirus Hu/GII/Goulburn Valley G5175 C/1983/AUS
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3814)
AUTHORS Symes,S.J., Gunesekere,I.C., Marshall,J.A. and Wright,P.J.
TITLE Norovirus mixed infection in an oyster-associated outbreak: an
opportunity for recombination
JOURNAL Arch. Virol. 152 (6), 1075-1086 (2007)
PUBMED 17334907
REFERENCE 2 (bases 1 to 3814)
AUTHORS Symes,S.J., Gunesekere,I.C., Marshall,J.A. and Wright,P.J.
TITLE Direct Submission
JOURNAL Submitted (26-JAN-2006) School of Veterinary Science, University of
Melbourne, Parkville, VIC 3010, Australia
FEATURES Location/Qualifiers
source 1..3814
/organism="Norovirus Hu/GII/Goulburn Valley G5175
C/1983/AUS"
/mol_type="genomic RNA"
/strain="Hu/GII/Goulburn Valley G5175 C/1983/AUS"
/db_xref="taxon:371737"
/country="Australia"
gene <1..1402
/gene="ORF1"
CDS <1..1402
/gene="ORF1"
/note="3D-like RNA polymerase"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="ABD36496.1"
/translation="YLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGKPPRPAVLEEAKK
TVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVKKNDHWNGESFTGPLADQASK
ANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGLMD
SMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAMEVM
VRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSA
MAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPLKLTQKLREYGLVPTRPDKTEGP
LVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQR
ATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWE
GDRNLAPEGVNEDGVE"
gene 1383..2996
/gene="ORF2"
CDS 1383..2996
/gene="ORF2"
/codon_start=1
/product="capsid"
/protein_id="ABD36497.1"
/translation="MKMASNDAAPSSDGAAGLVPEINHEVMAIEPVAGASIAAPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNAPGEFLLDLELGPDLNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKILFAVIPPGFPYENLSPAQLTMCPHVVVDVRQLEPVMLPMPD
IRNTFFHYNQDGGPRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPAPDFEFTFLVPP
SVESKTKAFTIPVLKISEMTNSRFPVPVDQMYTSRSEGIVVQPQNGRATIDGELLGTT
LVSPVSVCNFKGNLQTEVPGQHQQYQLQLTNLDGSPIDPTDDTPGPLGCPDFIGLLYG
VASQRGPGDATRAHEARIDTGSDTYAPKIGQVRFYSTSNNFETNQPTHFTPVGVYIEG
SSSDFNQWQLPRYGGHLANNNHLAPAVSPLFPGEQILFFRSFIPGASGHTNGEMDCLL
PQEFVQHFYQEAATAQSEVALLRFVNPDTGRVLFESKLHKQGFMTIASSGDHPIIMPT
NGYFRFEAWVNQFYSLAPVGTGSGRRRIQ"
gene 2996..3763
/gene="ORF3"
CDS 2996..3763
/gene="ORF3"
/codon_start=1
/product="basic protein"
/protein_id="ABD36498.1"
/translation="MAGAFIAGLAGDVLSSSVGSLVNAGSNAINQNVEYNFNRQLQEA
SFRHDKEMLNAQIAATTQLQKDIMAIKQGVLSAGGFSPTDAARGSVGAPMTKILDWNG
SRYWAPNSMRTTGYSGNFTSQGVRQVFQPVQNAPNPSTLKNFPKAPSSVSSFNTQSTQ
STKLSDSTAGTSIPSSRTTTLSRTSEWVRGQNERLSPFMSGALQTTFVTPPSSKSSSV
GTVSTVPKEVLDSWTPVFNTRRQPLFAHIRRRGESQT"
3'UTR 3764..3814
ORIGIN
1 ttacctggga ggcaaggacc ccagagtaga aaaaggaccc tccctgcagc aagtcatgag
61 agatcagctg aaacccttca cagagcccag gggcaagcca cctagacctg cagtcttaga
121 agaagctaaa aagacagtga tgaatgttct agaacaaacc attgaccctg ctaagccatg
181 gacctactcg caagcatgtg cctcattgga caaaaccact tctagtggta gcccccacca
241 tgtcaagaaa aatgaccatt ggaatgggga gtccttcact ggtccccttg cagatcaagc
301 atctaaagcc aacctcatgt atgaacaggc caaacatgtg cagcccgtgt acacggccgc
361 gcttaaagat gagctcgtca agactgacaa gatctacaaa aagataaaga agaggctcct
421 atgggggtcg gaccttggca cgatgatcag gtgcgccagg gcttttggtg gtctcatgga
481 cagcatgaag gcgagttgca tagctcttcc atgcagggtg ggaatgaaca tgaatgaaga
541 tggccccatc atatttgaca aacactctaa gtacaggtat cactatgatg ctgactattc
601 taggtgggat tcaacccagc aaaggagcat cctttctgcc gctatggaag tgatggtgcg
661 gttttctgct gaaccagaat tggcacaagt agttgcagag gaccttttgg cacctagcca
721 gctagatgtt ggcgattttg tcatctcagt ccaggagggt ctaccatcag gagtcccatg
781 tacatcacaa tggaactcaa tagcacactg gattctaacc ttgagtgcaa tggcagaagt
841 gtcaggtctc tcaccagatg ttgtccaagc ccactcctgt ttttcattct atggcgatga
901 tgagatcgtc agcactgata tcaaccttga ccccttgaag ttgacacaga aactcaggga
961 gtacggtctg gttcccaccc gacctgataa aactgaaggt cccctcgtca taactgaaga
1021 cctcaccggc ctgacgttcc tgcgtaggtc gattgcacgg gatccagctg ggtggtttgg
1081 aaaattggat caagactcaa ttctcaggca actatactgg acaagggggc ccaatcatga
1141 gaacccatac gagagcatgg tccctcattc tcagcgggcc acacagctca tggcccttct
1201 tggtgaggcc tcactgcatg gtccccaatt ttataagaaa gttagcaaga tggtcatcaa
1261 tgagattaag agtggtggtc tggaatttta tgtgcccaga caagaggcca tgtttaggtg
1321 gatgagattc tctgacctca gcacatggga gggcgatcgc aatcttgctc ccgagggtgt
1381 gaatgaagat ggcgtcgaat gacgcagctc catcgagtga tggcgcagcc ggcctcgtcc
1441 cagagatcaa tcacgaggtt atggcaattg agcctgttgc aggtgcatca atcgctgccc
1501 ctgtggtagg acaacaaaat attattgatc cctggataag aaacaacttt gtacaagcac
1561 ctgctggaga attcactgtt tcccctagga atgccccagg tgagttcttg cttgatttag
1621 aattgggtcc tgatttgaac ccctatctgg cacacttggc aagaatgtac aacggtcatg
1681 caggtggtat ggaagtgcag atagtactag ctgggaatgc gttcacagcg ggtaaaatct
1741 tatttgccgt cataccgcct gggtttccgt atgaaaattt gtccccagca caactcacga
1801 tgtgccccca cgtcgtagtt gatgtgaggc agcttgagcc tgtcatgctg cccatgccag
1861 acatcaggaa cacattcttt cattataatc aagatggtgg gccaagattg agattaattg
1921 ccatgttata tacccctctt agagctaata attcaggtga tgatgtgttc actgtttcct
1981 gtagagttct aacaagacct gcccctgatt ttgagtttac atttttagtc cccccctctg
2041 ttgagtcaaa gaccaaggca ttcaccatcc cagtgctaaa aatttctgaa atgacaaatt
2101 caagattccc tgtaccagtt gatcaaatgt acactagcag gagtgaggga atcgtggtcc
2161 aacctcagaa tggtagggcc actattgacg gggagctact cggcaccact ctcgtctccc
2221 cagtttctgt gtgcaatttc aagggaaacc tacaaactga ggtcccaggg caacaccaac
2281 aataccagct acagttaact aaccttgatg gctcacccat tgatcccact gatgacacac
2341 ctggaccact gggttgccca gacttcattg gcctcctcta cggggttgct agccagcgtg
2401 gtccaggtga cgccacgcgg gcccatgagg caaggattga caccggcagt gacacttatg
2461 cccccaaaat tggtcaggtc agattctact caacttcaaa caattttgaa acaaaccaac
2521 ccacacactt caccccagtg ggggtctaca ttgagggcag ttcttctgac tttaatcaat
2581 ggcaactccc caggtatgga ggtcatctag ctaataacaa tcacttggca cctgcagttt
2641 cacctctatt ccctggagag caaatccttt tcttcagatc attcatccca ggagccagtg
2701 gccacacaaa tggggagatg gattgcctcc tgccccagga gtttgtgcag cacttctacc
2761 aagaagcggc aactgcgcag tcagaggtgg ccctactgag gtttgtcaac cctgacactg
2821 gaagggtttt gtttgagtcc aaactccaca agcaaggatt catgacaatt gcaagttcag
2881 gtgaccatcc tatcattatg ccaaccaatg gttattttag atttgaagct tgggttaacc
2941 aattttattc tcttgcccct gtgggaactg gaagtgggcg tagaaggatc cagtaatggc
3001 tggagctttt atagcaggat tggctgggga cgtcttgtcc tcaagcgttg gttcgctggt
3061 taacgcgggc tccaacgcta ttaaccaaaa tgttgagtac aattttaaca gacagctcca
3121 ggaagcatct tttagacatg ataaggaaat gctcaatgcc cagattgctg cgacaacgca
3181 gctgcaaaaa gacataatgg caataaagca gggggttttg tccgctggcg gcttctcccc
3241 cactgatgcc gcgagaggtt cagttggagc cccaatgact aaaattttag attggaatgg
3301 atcaagatac tgggctccaa actcaatgag gaccacaggc tattctggca acttcacttc
3361 ccaaggtgtt aggcaagtgt ttcaacctgt tcaaaatgct cccaacccaa gcactttgaa
3421 gaatttccct aaggctcctt cttcagtgag ttcttttaat acccaatcca cccaatcaac
3481 aaagttgagt gattccacag caggaacctc tatcccctca tccagaacca ccacactttc
3541 aagaactagt gagtgggtga gggggcaaaa tgaaagactt agccctttca tgagtggcgc
3601 gctacaaaca acgttcgtga cgccaccttc aagcaagtct tcttctgtag ggacagtctc
3661 aaccgtcccc aaggaggttt tggactcctg gacgcctgtt ttcaatacac gcaggcagcc
3721 actcttcgcc cacattcgta ggcgagggga gtcacagact tagtgaaaag agtgatttga
3781 atttgattct ttgtcttgtt cttttctttc tttt
//