Typing tool
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Typing tool
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Complete norovirus genomes
| DQ379714 | GII.13 | |
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| GII.P41 |
ORF1: 1..1177
ORF2: 1158..2786
ORF3: 2786..3520
LOCUS DQ379714 3564 bp RNA linear VRL 28-MAY-2007
DEFINITION Norovirus Hu/GII/Goulburn Valley G5175 B/1983/AUS nonstructural
polyprotein (ORF1) gene, partial cds; and capsid (ORF2) and basic
protein (ORF3) genes, complete cds.
ACCESSION DQ379714
VERSION DQ379714.1
KEYWORDS .
SOURCE Norovirus Hu/GII/Goulburn Valley G5175 B/1983/AUS
ORGANISM Norovirus Hu/GII/Goulburn Valley G5175 B/1983/AUS
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3564)
AUTHORS Symes,S.J., Gunesekere,I.C., Marshall,J.A. and Wright,P.J.
TITLE Norovirus mixed infection in an oyster-associated outbreak: an
opportunity for recombination
JOURNAL Arch. Virol. 152 (6), 1075-1086 (2007)
PUBMED 17334907
REFERENCE 2 (bases 1 to 3564)
AUTHORS Symes,S.J., Gunesekere,I.C., Marshall,J.A. and Wright,P.J.
TITLE Direct Submission
JOURNAL Submitted (26-JAN-2006) School of Veterinary Science, University of
Melbourne, Parkville, VIC 3010, Australia
FEATURES Location/Qualifiers
source 1..3564
/organism="Norovirus Hu/GII/Goulburn Valley G5175
B/1983/AUS"
/mol_type="genomic RNA"
/strain="Hu/GII/Goulburn Valley G5175 B/1983/AUS"
/db_xref="taxon:371736"
/country="Australia"
gene <1..1177
/gene="ORF1"
CDS <1..1177
/gene="ORF1"
/note="3D-like RNA polymerase"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="ABD36493.1"
/translation="GHPHHMRKNECWNGESFTGKLADQASKANLMYEEGKNMTPVYTG
ALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPIRVGMNM
NEDGPIIFEKHSRYNYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQIVAEDL
LSPSVMDVGDFKISITEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSL
FSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTV
TRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPS
FYSKVSKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 1158..2786
/gene="ORF2"
CDS 1158..2786
/gene="ORF2"
/codon_start=1
/product="capsid"
/protein_id="ABD36494.1"
/translation="MKMASNDAAPSNDGAASLVPEGINETMPLEPVAGASIAAPVAGQ
TNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAIPPNFPVDMISPAQITMLPHLIVDVRTLEPIMIPLPD
VRNVFYHFNNQPQPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFIYLVPP
SVESKTKPFTLPILTISELTNSRFPIPIEQLYTAPNENNVVQCQNGRCTLDGELQGTT
QLLSSAICSYRGRTVANNGDNWDQNLLQLTYPNGASYDPTDEVPAPLGTQDFSGMLYG
VLTQDNTNVSAGEAKNAKGIYISTTSGKFTPKIGSIGLHSITEHVYPNQQSRFTPVGV
AVNENTPFQQWVLPHYAGSLALNTNLAPAVAPTFPGEQLLFFRSRVPCVQGQQGQDVF
IDCLLPQEWVNHFYQEAAPSQADVALIRYVNPDTGRTLFEAKLHRSGFITVSHTGAYP
LVVPPNGHFRFDSWVNQFYSLAPMGTGNGRRRIQ"
gene 2786..3520
/gene="ORF3"
CDS 2786..3520
/gene="ORF3"
/codon_start=1
/product="basic protein"
/protein_id="ABD36495.1"
/translation="MAGAFIAGLAGDMLTSAVGSLTSAGANAINQKLNFDYNKQLQNA
SFQHDKEMLQAQIDATKKLQSEMIAIKHGVLTAGGFSPADAARGAVNAPMTRVLDWSG
TRYYAPNSAQTTSYSGQFTPSPVHRVQVKPSSSSTQRTAAPSSIRSLSTQSTSVAGSA
SLGGSSTVSSSSRTADWVQQQGALSPYMHGALQTAYVTPPSSRASNVSSVSTVPKGVL
DSWTPVFNTRRQPLFAHLRKRGESQA"
3'UTR 3521..3564
ORIGIN
1 tggccacccg caccacatgc ggaagaatga atgttggaat ggagagtcct tcacaggaaa
61 attggcagat caagcttcaa aagctaacct aatgtatgag gaagggaaaa acatgacccc
121 agtctacaca ggtgccctca aggatgagct agtcaaaact gacaaaatat atggcaagat
181 caagaagagg ctcctctggg ggtcagacct ggcaaccatg atccggtgtg ctcgagcatt
241 cggaggacta atggatgaac tcaaggccca ctgcgtcaca cttcctatta gagttgggat
301 gaacatgaat gaggatggtc ccatcatctt tgaaaagcac tccaggtaca actaccatta
361 tgatgcagat tactctcggt gggattcaac acaacagagg gccgtgttag ctgcagctct
421 agaaattatg gtaaagtttt ccccagagcc acacctcgcc cagatagtcg cagaagacct
481 tctgtccccc agtgtgatgg acgtgggcga tttcaaaata tcaatcactg aagggctccc
541 ctctggggtg ccttgcacct cacaatggaa ctccattgcc cattggctcc tcacactttg
601 tgcactctct gaggtaacaa atctgtcccc tgacactatc caagcaaatt ctcttttctc
661 tttctatggt gatgatgaaa ttgtgagtac agatattaaa ttggatccag aaaagttgac
721 agccaaactg aaagagtatg ggctgaagcc aactcgccct gataagactg aaggacctct
781 ggtcatctct gaggacttga atggcctgac cttcctgcgg agaactgtga cccgcgaccc
841 agctggctgg tttggaaaat tggaacagag ttcaatactt agacaaatgt attggaccag
901 gggccccaat catgaggacc cctccgaaac aatgatacca cattcccaaa gacccataca
961 gctaatgtcc ctactaggtg aagctgcact gcatggccca tcattctaca gcaaggtcag
1021 caagctagtc attgcagaat tgaaggaagg tggcatggat ttttacgtgc ctagacaaga
1081 gccaatgttt cgatggatga ggttctcaga cttgagcacg tgggagggcg atcgcaatct
1141 ggctcccagt tttgtgaatg aagatggcgt cgaatgacgc cgctccatct aatgatggtg
1201 cagctagtct cgtaccagag ggcatcaatg agactatgcc attggaaccc gttgctggcg
1261 catctattgc tgccccagta gcgggacaaa ctaatataat tgacccctgg ataagaacaa
1321 attttgtgca agcccccaat ggagaattca cagtgtcgcc aagaaattcc cctggagaga
1381 ttttgttaaa tttagaatta ggaccagatc taaatcctta tttagcccat ctatcaagaa
1441 tgtataatgg ttatgctgga ggtgttgagg tgcaagtgct ccttgctggg aatgcgttca
1501 cagcaggtaa gatactgttt gcagcaatcc cccctaactt tcctgtagat atgattagtc
1561 cagcccagat cactatgctt ccccacttga ttgtagatgt taggaccttg gaacctatca
1621 tgataccttt gcctgatgtt agaaatgtgt tctatcactt taataaccaa ccccaaccta
1681 gaatgaggct agtggctatg ctttacaccc cattgaggtc taatggttca ggagatgatg
1741 ttttcactgt gtcttgcaga gtactaacta ggccaactcc tgattttgag tttatttatt
1801 tggtaccccc ttctgtggag tctaaaacca aaccattcac attaccaata ctgaccattt
1861 ctgaattgac caactctcga ttccctattc caattgagca attgtatacg gccccaaatg
1921 agaacaatgt tgtccagtgc caaaatggca ggtgcacctt ggatggtgag ctccaaggca
1981 caacccagct gctgtcaagt gcgatatgct cttatagggg caggactgtg gccaacaatg
2041 gggataattg ggaccagaat ttgctccagc tgacctatcc aaatggtgca agctacgacc
2101 ccaccgatga agtaccagca ccattgggca ctcaggattt tagtgggatg ttatatggag
2161 tgctgaccca ggacaacaca aatgtgagtg caggggaggc caaaaatgct aagggaatat
2221 atatatctac caccagtgga aaattcaccc caaaaattgg gtcaattgga ttgcattcaa
2281 taactgagca tgtgtacccc aaccaacagt cgcggttcac tcctgttgga gttgccgtga
2341 atgagaatac ccccttccaa caatgggttc taccacacta tgcaggtagc cttgctctca
2401 acaccaattt agcacccgct gttgccccaa ccttccctgg tgagcaattg ttattcttca
2461 ggtcccgtgt tccatgtgtt caaggtcagc aggggcaaga tgtgttcata gattgtctcc
2521 taccccaaga gtgggtaaat catttttatc aagaagcagc tccttcccaa gcagacgttg
2581 ccctcatcag gtatgtcaac cctgacactg gccgcacgct gtttgaagcc aaattgcata
2641 gatcaggttt cattactgta tcacatactg gtgcttaccc tcttgtggtc cccccaaatg
2701 gtcattttag gtttgattct tgggttaatc aattttactc actcgcccct atgggaactg
2761 gcaatgggcg caggagaatt caataatggc aggagcattc atagctggtt tagccggtga
2821 catgttgact tctgctgttg ggtcactgac ctctgcagga gccaatgcca tcaaccaaaa
2881 attaaacttt gattacaaca aacaactcca aaacgcatct ttccagcatg acaaggaaat
2941 gttgcaggct caaattgatg ccacaaagaa gctccaatca gagatgattg caatcaagca
3001 tggggttttg accgcgggcg gcttttcccc agctgatgca gccagagggg cagtcaacgc
3061 cccaatgaca agagtgttgg attggtcagg aacacgctac tatgctccaa attctgcaca
3121 aaccactagt tactctgggc aattcacccc ctcgccagtt catcgggtgc aggtgaagcc
3181 ttcctctagc tcaactcagc ggactgcagc tccaagcagt atccgcagtc tgtcaactca
3241 atcaacctct gtggctggct cagcttccct ggggggatct tctacagtct cttcaagctc
3301 taggacagca gattgggtgc aacagcaagg ggctcttagc ccatacatgc atggagccct
3361 gcagacggcg tatgtcacac cgccgtcaag tagggcctcc aatgtgagct ctgtctcaac
3421 agtgcccaaa ggggttttgg actcctggac acctgtgttt aacacacgca ggcagccgct
3481 gttcgcacac ctcaggaaga ggggggagtc acaggcttag tgaaaaggac aatcaatgat
3541 taaatgtgat tttgttttcc tttt
//