Typing tool
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Typing tool
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Complete norovirus genomes
| DQ369797 | GII.4 Asia | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6707
ORF3: 6707..7513
LOCUS DQ369797 7558 bp RNA linear VRL 08-FEB-2006
DEFINITION Norovirus Hu/Guangzhou/NVgz01/CHN, complete genome.
ACCESSION DQ369797
VERSION DQ369797.1
KEYWORDS .
SOURCE Norovirus Hu/Guangzhou/NVgz01/CHN
ORGANISM Norovirus Hu/Guangzhou/NVgz01/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7558)
AUTHORS Zeng,Q.Y., Zhou,R., Zhong,J.Y., Zhu,B., Li,X., Chen,Y., Lin,T. and
Gong,S.T.
TITLE Direct Submission
JOURNAL Submitted (19-JAN-2006) Central Laboratory, Guangzhou Children's
Hospital, Guangzhou Ren Min Road No. 318, Guangzhou, GuangDong
510120, China
FEATURES Location/Qualifiers
source 1..7558
/organism="Norovirus Hu/Guangzhou/NVgz01/CHN"
/mol_type="genomic RNA"
/strain="Hu/Guangzhou/NVgz01/CHN"
/db_xref="taxon:370037"
/country="China: Guangzhou"
gene 5..5104
/gene="ORF1"
CDS 5..5104
/gene="ORF1"
/note="N-terminal helicase, VPg, 3Cpro, RdRp"
/codon_start=1
/product="polyprotein"
/protein_id="ABC96331.1"
/translation="MKMASNDASAVAAANSNNDTAKSSSDGVLSSMAVTFKRALGARH
KQPPPREIPQRPPRPPTPELAKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVWQPD
ETNTAFSVPPLNQRENRDAKEPLTGTTLEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLITRPIKDIIGK
VRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLTPRNGVGHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
PGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTM
PELKQALKNVAIKNCQIVYGGCTYRLESDGKGDVKVDRVQNATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDPWSKPQVEDTEETASNDGC
PKPKDDDEFVVSSDDIKTEGKKGKNKSGCGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKGPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGRPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCAPSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELREGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGAE"
gene 5085..6707
/gene="ORF2"
CDS 5085..6707
/gene="ORF2"
/codon_start=1
/product="capsid VP1"
/protein_id="ABC96332.1"
/translation="MKMAPNDASPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVSICTFRGDVTHIPGTRIYRMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTKGDGSTRGHKATVSTGSVDFTPKLGSVQFATDTDNDFETGQNTRFTPVGVIQDG
SSAHRNEPQQWVLPDYSGRTVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPSQSDVALLRFVNPDTGRVLFECKLHKAGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6707..7513
/gene="ORF3"
CDS 6707..7513
/gene="ORF3"
/codon_start=1
/product="hypothetical protein VP2"
/protein_id="ABC96333.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFEFSSNLQQASFQHDKEMLQAQIEVTKKLQQGMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNPRATVPARGSPSMPP
NTSTVTSVYSDQTVSTRLGSTAGSGTRVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgtcgct gctgctaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcataaac agcctccccc gagggaaata ccacaaagac ctccacgacc
181 acccaccccg gaacttgcca aaaagatccc tcctccccca cccaacgggg aggatgaact
241 agtggtttct tacagcgcca aagatggcgt ttccggtttg cctgagctta ccactgtctg
301 gcagccggat gaaaccaaca cggcgttcag tgttccccca ctcaaccaga gggagaatag
361 ggacgccaag gagccgctaa ccggaacaac cctggaaatg tgggacgggg agatctatca
421 ttacggtctg tatgtggagc gaggccttgt acttggtgtg cacaaaccac cagctgccat
481 cagcctcgcc aaggttgagc tagcaccact ctctctgttt tggagaccag tgtatacacc
541 acagtatctc atctctccag acactctcag gagactgcat ggagagtcgt tcccctacac
601 agcctttgac aacaactgct atgccttctg ttgttgggtc ctggacctaa acgactcgtg
661 gttgtgcagg agaatgatcc agaggacaac tggtttcttc agaccttacc aagactggaa
721 caggaaaccc ctccccacca tggatgactc caaattgaag aaggtagcca acatattctt
781 gtgtgcgcta tcttcgctta tcactaggcc catcaaagac ataataggaa aggtgaggcc
841 gcttaacatc cttaacatct tggcctcatg tgattggact tttgcaggca tagtggaatc
901 tttgatcctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttactaggtg actacgaact gcaggggccc gaggaccttg cagtggaact
1021 cgttccagta gtgatggggg ggattggttt ggtgctagga ttcactaaag agaagatcgg
1081 aaaaatgttg tcatctgctg catccacctt aagggcttgt aaagaccttg gtgcatacgg
1141 actggaaatc ctaaaattgg tcatgaagtg gttcttccca aagaaagagg aagcaaatga
1201 gttggctatg gtgaggtcca tcgaggatgc ggtgctggac ctcgaagcaa ttgagaacaa
1261 tcacatgact gccctcctca aagacaaaga cagcttggca acctacatga gaacccttga
1321 cctcgaggag gagaaggcca ggaagctttc aaccaagtct gcttcacctg acatcgtggg
1381 cacaatcaac gctctcctgg cgagaatcgc cgctgcacgc tccctggtgc atcgggcgaa
1441 agaggaactc tccagcagac caagacctgt tgttgttatg atatcaggta ggccagggat
1501 agggaaaact caccttgcta gggaactggc caagaaaatc gcagcttcgc ttacaggaga
1561 ccagcgtgtg ggtctcaccc ctcgcaatgg cgttggtcac tgggatgcat ataaggggga
1621 aagagtcgtc ctatgggacg attatggaat gagtaatccc atccacgacg ccctcagatt
1681 acaggaactt gctgacacct gccccctcac actaaactgt gacaggattg agaacaaagg
1741 aaaggtcttt gacagtgatg ccataatcat caccactaat ctggccaacc cagcaccatt
1801 ggactatgtc aactttgaag catgctcgag gcgcatcgac ttcctcgtgt acgcagaagc
1861 ccctgaggtc gagaaggcaa agcgtgattt cccaggtcaa cctgacatgt ggaagaacgc
1921 attcagttct gacttctcgc acataaaact gacgctggct ccgcaaggtg gcttcgacaa
1981 gaacggaaac accccacacg ggaaaggcgt catgaaaacc ctcaccactg gttccctcat
2041 cgcccgagca ccagggttac tccatgagag gttagatgag tatgagctgc agggcccaac
2101 ccctaccacc tttaactttg accgcaacaa ggtgcttgcg ttcagacagc ttgctgccga
2161 aaacaagtac gggttgttgg acacaatgag agttggaaaa cagctcaagg atgtcaagac
2221 catgccagag ctcaaacaag cgctcaaaaa tgttgcaatc aaaaattgtc agatagtgta
2281 tggtggctgc acttacaggc ttgagtctga tggcaagggt gatgtaaaag ttgacagagt
2341 ccagaacgcc actgtacaga ccaacaatga gcttgccggc gccctacatc atcttaggtg
2401 tgccagaatc agatattatg tcaagtgtgt ccaggaggcc ctgtattcca tcatccaaat
2461 tgctggagca gcatttgtaa ccacgcgcat tgtcaagcgc atgaacatac aagacccctg
2521 gtccaagcca caggtggagg acacagagga gaccgccagc aatgacgggt gcccaaaacc
2581 caaggatgat gacgagttcg ttgtctcatc cgatgacatc aaaaccgagg gcaagaaagg
2641 gaagaacaag tctggctgtg gcaagaagca cacagccttc tcaagcaaag gtctcagtga
2701 tgaagagtac gatgagtaca aaagaatcag agaagaaagg aacggcaaat actccataga
2761 ggaatacctt caggacagag acaagtatta tgaggaggtg gccatcgcca gggcgaccga
2821 agaggacttc tgtgaagaag aagaggccaa gatccgacaa aggattttca ggccaacaag
2881 gaaacaacgc aaagaggaga gggcctctct cggtttggtc acaggctctg aaatcaggaa
2941 gaggaaccca gacgacttca agcctaaagg aaagctgtgg gctgatgatg acaggagtgt
3001 tgactacaat gagagactca attttgaagc cccaccaagc atctggtcga ggatagtcaa
3061 ttttggttcg ggttggggct tttgggtctc ccccagcctg ttcataacat caactcatgt
3121 cataccccag ggtgcacagg agttctttgg tgttcccatc aaacaaattc agatacacaa
3181 atcgggtgaa ttctgtcgtt tgaggtttcc aaaaccaatc agaactgacg taacaggcat
3241 gatcttagaa gaaggtgcac ccgaagggac cgtggtcaca ctactcatta aagggccaac
3301 tggagaactc atgcccttgg cagccagaat gggaacccat gcaaccatga agattcaagg
3361 gcgcactgtt ggaggtcaaa tgggcatgct cctaacagga tccaacgcca agagtatgga
3421 cctgggcacc acaccaggtg actgtggccg tccctacatt tacaagaggg ggaatgacta
3481 tgtggtcatt ggagtccaca cagctgccgc ccgtggagga aacactgtca tatgtgccac
3541 ccaagggagc gagggagaag ccacacttga aggcggtgac agcaagggga cctactgcgg
3601 tgcaccaatc ttaggtccag ggagtgcccc aaagctcagc accaagacta aattctggag
3661 atcatccacg gcaccactcc cacctggtac ctatgagcca gcctacctcg gcggcaagga
3721 ccctagagtt aagggtggcc cttcattgca acaagttatg agggaccagc tgaaaccatt
3781 cactgaaccc aggggtaaac caccaaagcc aagtgtgttg gaagctgcca agaaaaccat
3841 cgtcaatgtc cttgaacaaa caattgatcc acctcaaaaa tggtcatttg cgcaggcatg
3901 cgcatccctt gacaagacca cttccagtgg tcacccgcac cacatgcgga aaaacgactg
3961 ctggaacgga gaatccttta caggcaaatt ggcagaccag gcttccaagg ccaacctgat
4021 gttcgaggag ggaaagaaca tgaccccagt ctacacgggt gcgcttaagg acgagctggt
4081 caagactgac aaaatttatg gcaagatcaa aaagaggctt ctctggggtt cggacctggc
4141 gaccatgatc cggtgcgctc gagcattcgg gggcctgatg gaggaactca aagcacattg
4201 tgtcacacta cctgtcagag tgggtatgaa tatgaatgag gatggtccta tcatctttga
4261 gagacactcc agatataaat atcattatga tgctgattac tcccggtggg actcaacaca
4321 acaaagagcc gtgttagcag cggctttaga aatcatggtc aagttctccc cagagccgca
4381 tctggcccaa aaagttgcag aagaccttct ttctcccagc gtgatggacg tgggtgattt
4441 caaaatatca atcaatgagg gcctcccctc cggggtgccc tgcacctccc aatggaattc
4501 catcgcccac tggctcctca ctctatgtgc accctctgag gttacaaacc tgtcccctga
4561 cattatccag gccaactctc tcttttcttt ctacggtgat gatgaaattg tgagcacaga
4621 cataaaattg gacccagaaa agttgacagc aaaactcaag gaatacgggt tgaaaccgac
4681 ccgccctgac aagactgagg gaccccttgt tatctctgaa gacctgaatg gcctaacctt
4741 cctgcggagg accgtgaccc gcgacccagc aggctggttt ggaaagttgg aacagagttc
4801 aatactcaga caaatgtatt ggactagggg ccccaaccat gaagacccat ctgaaacaat
4861 gataccacac tcccagaggc ccatacaatt gatgtctttg ctgggtgagg ctgcactcca
4921 cggcccagca ttctacagca aaatcagcaa actggtcatt gcagagttga gggaaggtgg
4981 catggatttt tacgtgccaa gacaagagcc aatgttcaga tggatgagat tctcggatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgccga
5101 atgacgccag cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggcttt ggagcccgtt gttggtgccg ctattgcggc acctgtagcg ggccaacaaa
5221 atgtaattga cccctggatt aggaataatt ttgtgcaagc ccctggtgga gagttcacag
5281 tatcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttaggc cctgatctga
5341 atccatacct ttctcacctg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc
5401 aggtaatcct cgcggggaac gcgttcaccg ccgggaaaat catatttgca gcagtcccac
5461 caaatttccc aactgaaggc ttgagcccca gccaggtcac tatgttcccc cacataatag
5521 tagatgttag gcaattggaa cctgtgttga tccccttacc tgatgttagg aataatttct
5581 accattacaa tcaatcaaat gattccacca ttaaattgat agcaatgctg tacacaccac
5641 ttagggccaa taatgctggg gatgatgtct tcacagtctc ttgtcgagtc ctcacgaggc
5701 catcccccga ttttgatttc atatttctgg tgccacccac agttgagtca agaaccaaac
5761 cattcaccgt cccaatttta actgttgagg aaatgaccaa ttcaagattc cccattcctt
5821 tggaaaaatt gttcacgggt cccagcagtg cctttgtcgt ccaaccacaa aatggcaggt
5881 gcacgactga tggcgtgctc ttaggcacta cccaactgtc ccccgtcagc atctgcacct
5941 tcagaggcga tgtcacccac attccaggta ctcgtattta cagaatgaat ttggcttctc
6001 aaaattggaa caattatgac ccaacagaag aaattccagc ccctctggga actccagatt
6061 tcgtgggaaa gatccaaggc atgctcaccc aaaccacaaa gggagacggc tcgacccgcg
6121 gtcacaaagc tacagtgagc actgggagtg ttgacttcac tccaaagctg ggcagcgttc
6181 agttcgccac tgatacagac aatgattttg aaactggcca aaacacaagg ttcaccccag
6241 tcggtgtcat ccaggatggt agtagtgccc acagaaatga accccaacaa tgggtactcc
6301 cagattactc aggtagaact gttcataatg tacacctagc ccctgccgta gcccccactt
6361 ttccgggtga gcaacttctt ttcttcagat ctactatgcc cggatgcagt gggtatccca
6421 atatggattt ggattgtcta ctcccccagg aatgggtaca gcacttctac caagaggcag
6481 ccccatcaca atctgacgtg gctttgctga gatttgtgaa tccagacaca ggcagggttc
6541 tgtttgagtg caagcttcat aaagcaggct atgtcacagt ggcgcacact ggccagcatg
6601 atttggttat cccccccaat ggctatttta gatttgattc ctgggtcaac cagttctaca
6661 cacttgcccc catgggaaat ggagcggggc gtagacgtgc attataatgg ctggggcttt
6721 ctttgctgga ttggcatctg atgtccttgg ctctggactt ggttccctga tcaatgctgg
6781 ggctggggcc atcaaccaaa aagttgaatt tgaaaataac agaaaattgc aacaagcttc
6841 cttcgaattt agcagcaatc tacaacaagc ttcctttcaa catgacaaag agatgctcca
6901 agcacaaatt gaggtcacta aaaagttaca gcagggtatg atgagagtca aacaggcaat
6961 gctcctagag ggtggattct ctgaaacaga tgcggcccgt ggggcaatca acgcccccat
7021 gacaaaggct ttggactgga gcggaacaag gtactgggct cctgatgcta gaaccacaac
7081 atacaatgca ggccgttttt ccacccctca accttcgggg gcactgccag gaagaactaa
7141 tcccagggct actgtccccg ctcggggctc ccccagcatg cctcctaaca cttctactgt
7201 tacttctgtc tattcagatc aaactgtttc aacgagactt ggttctacag ctggttctgg
7261 caccagagtc tcgagcctcc cgtcaactgc aaggactagg agctgggttg aggatcaaaa
7321 caggaatttg tcacctttca tgaggggggc tcacaacata tcgttcgtca ccccaccatc
7381 tagtagatcc tctagccaag gcacggtctc aaccgtgccc aaagaagttt tggactcctg
7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga
7501 gtcacgggcg taatgtgaaa agacaaaatt gattatcttt cctttcttta gggtcttt
//