Typing tool
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Typing tool
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Complete norovirus genomes
| DQ364459 | GII.4 Farmington Hills | |
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| GII.P4 Hunter |
ORF1: 1..686
ORF2: 667..2289
ORF3: 2289..3095
LOCUS DQ364459 3120 bp RNA linear VRL 26-JUL-2016
DEFINITION Norovirus genogroup 2 strain Hu/NoV/Lanzhou/35666/2002/China RNA
polymerase gene, partial cds; and capsid protein and minor
structural protein genes, complete cds.
ACCESSION DQ364459
VERSION DQ364459.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3120)
AUTHORS Jin,M., Yu,T., Fan,J. and Wang,J.
TITLE Analysis of relatedness of Norovirus strain Lanzhou/02 in China to
a predominant circulating strain in the United States, 2002
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3120)
AUTHORS Jin,M.
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2006) Department of Preventive Veterinary,
College of Veterinary Medicine, Northeast Agriculture University,
59 Mucai Street, Harbin, Heilongjiang 150030, China
FEATURES Location/Qualifiers
source 1..3120
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/NoV/Lanzhou/35666/2002/China"
/db_xref="taxon:122929"
/note="group: GII/4"
CDS <1..686
/note="ORF1; nonstructural protein"
/codon_start=3
/product="RNA polymerase"
/protein_id="ABC96745.1"
/translation="VVDVGDFTISINKGLPSGVPCTSQWNSIAHWLLTLCALSEVTNL
SPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDL
NGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSL
LGEAALHGPTFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAP
SFVNEDGVE"
CDS 667..2289
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="ABC96746.1"
/translation="MKMASNDASSSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGTHDYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRGDGSTRGHKATVSTGSVHFTPKLGSVQFTTDTNNDFETGQNTKFTPVGVVQDG
NSTHQNEPQQWVLPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
CDS 2289..3095
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="ABC96747.1"
/translation="MAGAFFAGLASDVLGSGLGSLISAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMEVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNPRAPAPTRGSPSIPS
NASTATSVYSNQTVSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 gtgtggtgga tgtgggtgac ttcacaatat caatcaacaa gggtctaccc tctggggtgc
61 cctgcacctc ccaatggaac tccatcgccc actggcttct cactctctgt gcgctctctg
121 aagttacaaa tttgtcccct gacatcatac aggctaattc cctcttctcc ttttatggtg
181 atgacgaaat tgttagtaca gacataaaac tagacccaga gaagttgaca gcaaagctta
241 aagaatacgg gttgaaacca acccgccctg ataaaactga aggacctctt gtcatctctg
301 aagacttaaa tggcctgact ttcctacgga gaactgtgac ccgcgaccca gctggttggt
361 ttggaaaact ggagcagagc tcaatactca ggcaaatgta ctggactagg ggccccaacc
421 atgaagaccc atctgaaaca atgattccac actcccaaag acccatacaa ttgatgtccc
481 tactgggaga ggccgcactc cacggcccaa cattttacag caaaatcagc aagttagtca
541 ttgcagagct aaaagaaggt ggtatggatt tttacgtgcc cagacaagag ccaatgttca
601 ggtggatgag attctcagat ctgagcacgt gggagggcga tcgcaatctg gctcccagtt
661 ttgtgaatga agatggcgtc gaatgacgcc agctcatctg atgggtctac agcaaacctc
721 gtcccagagg tcaacaatga ggttatggct ttggagcccg ttgttggtgc cgcaattgcg
781 gcacctgtag cgggccaaca aaatgtaatt gacccctgga ttagaaataa ttttgtacaa
841 gcccctggtg gagagttcac agtatcccct agaaacgctc caggtgaaat actatggagc
901 gcgcccttgg gccctgatct gaatccctac ctttctcatt tggcccgaat gtacaatggt
961 tatgcaggtg gttttgaagt gcaggtaatc ctcgcgggga acgcgttcac cgccggtaaa
1021 atcatatttg cagcagtccc accaaatttt ccaactgaag gcttgagccc cagccaggtc
1081 accatgttcc cccatataat agtagatgtt agacaactgg aacctgtgtt gatcccctta
1141 cctgatgtta ggaataattt ctaccactat aatcagtcaa atgaccctac cattaaactg
1201 atagcaatgc tatacacacc acttagggct aataatgctg gggatgatgt cttcacagtc
1261 tcttgtcgag tcctcacgag gccatccccc gattttgatt tcatattttt ggtgccaccc
1321 acagttgagt caagaactaa accattcacc gtcccaattt taactgttga ggaaatgacc
1381 aattcaagat tccccattcc tttggaaaag ttgttcacgg gtcccagcag tgcctttgtt
1441 gtccaaccac aaaatggcag atgcacgact gacggcgtgc tcttaggcac tacccaactg
1501 tctcctgtca acatctgcac cttcagaggg gatgtcaccc acattgcagg tactcatgat
1561 tacacaatga atttggcttc tcaaaattgg aacaattacg acccaacaga agaaatccca
1621 gcccctctgg gaactccaga tttcgtggga aagatccaag gcgtgctcac tcaaaccaca
1681 aggggagacg gctcaacccg tggccacaaa gctacagtga gcactgggag tgtccacttt
1741 actccaaagc tgggcagtgt tcaattcacc actgatacaa acaatgattt tgaaactggc
1801 caaaacacga aattcacccc agtcggtgtc gtccaggatg gcaatagtac ccaccaaaat
1861 gaaccccaac aatgggtgct cccaaattac tcaggcagaa ctggccacaa tgtacaccta
1921 gcccctgccg tagcccccac ttttccgggt gagcaacttc ttttcttcag gtccactatg
1981 cccggttgca gcgggtatcc caacatgaat ttggattgcc tactccccca ggaatgggtg
2041 cagcacttct accaagaggc agctccagca caatctgatg tggctctgct gagatttgtg
2101 aatccagaca caggtagggt cctgtttgag tgcaaacttc ataaatcagg ctatgtcaca
2161 gtggctcaca ctggccagca tgatttggtt atccccccca atggctattt tagatttgat
2221 tcctgggtta accaattcta cacacttgcc cccatgggaa atggagcggg gcgtagacgt
2281 gcgttataat ggctggagct ttctttgctg gattggcatc tgatgtcctt ggctctggac
2341 ttggttccct aatcagtgct ggggctgggg ccatcaacca aaaagttgaa tttgaaaata
2401 acagaaaatt gcaacaagct tccttccagt ttagcagcaa tctgcaacag gcttcctttc
2461 aacatgacaa agagatgctc caagcacaaa ttgaggccac taaaaagttg caacagggta
2521 tgatggaagt taaacaggca atgctcttag agggtggatt ctctgagaca gatgcagccc
2581 gtggggcaat caacgccccc atgacaaagg ctttggactg gagcggaaca aggtactggg
2641 cccctgatgc taggactaca acatacaatg caggccgctt ttccacccct caaccttcgg
2701 gggctctgcc aggaagaact aaccccaggg ctcctgcccc cactcggggc tcccccagca
2761 taccctctaa tgcctctact gctacttctg tgtattcaaa tcaaactgtt tcaacgagac
2821 ttggttctac agctggttct ggcaccagtg tctcgagtct cccgtcaact gcaaggacta
2881 ggagctgggt tgaggatcaa aacaggaatt tgtcaccttt catgaggggg gctcacaaca
2941 tatcgttcgt caccccacca tctagtagat cctctagcca aggcacagtc tcaaccgtgc
3001 ctaaagaagt tttggactcc tggactggcg ctttcaacac gcgcaggcag cctctcttcg
3061 ctcacattcg taagcgaggg gagtcacggg cgtaatgtga aaagatgtga aaagagtcga
//