Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| DQ078814 | GII.4 Hunter | |
|
|---|---|---|---|
| GII.P4 Hunter |
ORF1: 5..5104
ORF2: 5085..6707
ORF3: 6707..7513
LOCUS DQ078814 7559 bp RNA linear VRL 26-JUL-2016
DEFINITION Norovirus Hu/GII.4/Hunter504D/04O/AU, complete genome.
ACCESSION DQ078814
VERSION DQ078814.2
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Hunter504D/04O/AU
ORGANISM Norovirus Hu/GII.4/Hunter504D/04O/AU
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7559)
AUTHORS Bull,R.A., Tu,E.T., McIver,C.J., Rawlinson,W.D. and White,P.A.
TITLE Emergence of a New Norovirus Genotype II.4 Variant Associated with
Global Outbreaks of Gastroenteritis
JOURNAL J. Clin. Microbiol. 44 (2), 327-333 (2006)
PUBMED 16455879
REFERENCE 2 (bases 1 to 7559)
AUTHORS Bull,R.A., Tu,E.T.V., McIver,C.J., Rawlinson,W.D. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2005) Biotechnology and Biomolecular Sciences,
University of New South Wales, Anzac Parade, Sydney, NSW 2052,
Australia
REFERENCE 3 (bases 1 to 7559)
AUTHORS Bull,R.A., Tu,E.T.V., McIver,C.J., Rawlinson,W.D. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (31-AUG-2009) Biotechnology and Biomolecular Sciences,
University of New South Wales, Anzac Parade, Sydney, NSW 2052,
Australia
REMARK Sequence update by submitter
COMMENT On Aug 31, 2009 this sequence version replaced DQ078814.1.
FEATURES Location/Qualifiers
source 1..7559
/organism="Norovirus Hu/GII.4/Hunter504D/04O/AU"
/mol_type="genomic RNA"
/strain="Hunter504D/04O"
/isolate="Hu/GII.4/Hunter504D/04O/AU"
/db_xref="taxon:332857"
/geo_loc_name="Australia"
misc_feature 1..4
/note="5'NTR"
CDS 5..5104
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ACV32668.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKNIPPPPPNGEDEIAVSYSVKDGVSGLPDLSTVRQPE
ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LARVELTPLSLFWRPVYTPQYLISPDALKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDLIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM
PELKQALKNISIKKCQIVHNGCTYTLESDGKGNVRVDRVQSASVQTNNELTGALHHLR
CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKDGC
PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEDDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGCLSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6707
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="AAZ31396.2"
/translation="MKMASNDATPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEVLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNLYHYNQSNDPTIRLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGRIQGVL
TQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDG
STTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
CDS 6707..7513
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="ACV32669.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAVN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGASPGRTNLRATVPARGSSSTPS
NASAATSVYSNQTASTRLGSTAGSGTSVSSLPSTARARSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
misc_feature 7514..7559
/note="3'NTR"
ORIGIN
1 gtgaatgaag atggcctcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcctaagc agcctccccc gagggaaata ccacaaagac ccccacgacc
181 acctactcca gaactggtca aaaatatccc ccctcccccg cccaacggag aggatgaaat
241 agcggtttct tatagtgtca aagatggtgt ttccggtttg cctgatcttt ccaccgtcag
301 gcaaccggaa gaatctaaca cggccttcag tgtccctcca ctcaatcaga gggagaatag
361 agatgctaag gagccactga ctggaacaat tctggaaatg tgggatggag aaatctacca
421 ttatggcctg tatgtggagc gaggtcttgt actaggtgtg cacaaaccac cagctgccat
481 tagcctcgct agggtcgaac taacaccact ctccttgttc tggagacctg tgtacactcc
541 tcagtacctc atctctccag acgctctcaa gaaattacac ggagagacgt tcccctacac
601 agcctttgac aacaactgct atgccttttg ctgctgggtc ctggacctaa acgactcgtg
661 gctgagtagg agaatgatcc agagaacaac tggcttcttc aggccctacc aagattggaa
721 taggaaaccc ctccccacca tggatgactc caagttaaag aaggtagcta acatattcct
781 gtgtgctctg tcttcgctat tcaccaggcc tataaaagat ttaataggga agctaaggcc
841 tcttaacatc ctcaacatct tggcctcatg tgactggact tttgcaggca tagtggagtc
901 cttgatactc ttggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gattgccccc ttactcggtg attacgagct acaaggacct gaggaccttg cagtggagct
1021 cgtccctgta gtgatggggg gaattggttt ggtgctagga ttcaccaaag agaagattgg
1081 aaaaatgttg tcatctgctg catccacctt gagagcttgt aaagatcttg gtgcatatgg
1141 gctagagatc ctaaagttgg tcatgaagtg gttcttcccg aagaaagagg aagcaaatga
1201 actggctata gtgagatcca tcgaggatgc agtcctggat ctcgaggcaa ttgaaaacaa
1261 ccatatgacc actttgctca aagacaaaga cagtctggca acctacatga gaacccttga
1321 ccttgaggag gagaaagcca ggaaactctc aaccaagtct gcttcacctg acatcgtggg
1381 cacaatcaac gcccttctgg cgagaatcgc tgctgcacgt tctctggtgc atcgagcgaa
1441 ggaggaactt tccagcagac caagacctgt agtgttgatg atatcaggca gaccaggaat
1501 agggaagacc caccttgcta gggaagtggc taagagaatc gcagcctccc ttacaggaga
1561 ccagcgtgta ggcctcgtcc cacgcaatgg cgtcgaccat tgggatgcgt acaaggggga
1621 gagggtcgtc ctatgggacg actatggaat gagcaacccc atccacgatg ccctcaggtt
1681 gcaagaactc gctgacactt gccccctcac cctaaactgt gacaggattg agaataaagg
1741 aaaggtcttt gacagcgatg tcatcattat caccactaat ctggctaacc cagcaccact
1801 ggactatgtc aactttgaag catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc
1861 ccctgaggtc gaaaaggcga agcgtgactt cccaggccaa cccgacatgt ggaagaacgc
1921 cttcagttct gatttctcac acataaaact aacattggct ccacagggtg gcttcgacaa
1981 gaacgggaac accccacacg gaaagggcgt tatgaagact ctcaccactg gctcccttat
2041 tgcccgggca tcagggctac tccatgagag gctagatgaa ttcgaactac agggcccaac
2101 tctcaccacc ttcaactttg atcgcaataa agtgcttgcc tttagacaac ttgctgctga
2161 aaacaaatat gggttgatgg acacaatgaa agttggtagg cagctcaagg atgtcagaac
2221 aatgccagag cttaaacaag cactcaagaa tatctcaatc aagaagtgcc agatagtgca
2281 taatggttgc acctacacac ttgagtctga tggcaagggc aatgtgagag ttgacagagt
2341 tcaaagcgcc tccgtgcaga ccaacaatga gctgactggc gccctgcacc atctaaggtg
2401 cgccagaata agatactatg tcaggtgtgt ccaggaggcc ctgtattcca tcatccagat
2461 tgctggggct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aagacctatg
2521 gtccaagcca caagtggaaa acacagagga gactaccagc aaggacgggt gtccaaaacc
2581 caaagatgat gaggagttcg tcatttcatc cgacgacatc aaaactgagg gtaagaaagg
2641 gaagaacaag actggccgcg gcaagaagca cacagccttc tcaagcaaag gtctcagtga
2701 tgaagaggac gatgagtaca agaggattag agaagaaagg aatggcaagt actccataga
2761 agagtacctt caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgaccga
2821 ggaggacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttca ggccaacaag
2881 gaaacaacgc aaggaggaaa gagcttctct cggtttagtt acaggttctg aaattaggaa
2941 aagaaatcca gatgatttca aacccaaggg gaaactgtgg gctgacgatg atagaagtgt
3001 ggactacaat gagaaactca gttttgaagc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggttca ggttggggat tctgggtctc ccccagtctg ttcataacat caacccatgt
3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aaacaaattc aggtacataa
3181 gtcaggcgaa ttctgtcgct tgagattccc aaaaccaatc aggactgatg tgacgggcat
3241 gatcttagaa gaaggtgcac ccgagggcac cgtggtcaca ctactcatca aaaggtccac
3301 tggagaactc atgcccctag cagctaggat ggggacccat gcaaccatga aaatccaagg
3361 gcgcactgtt ggaggtcaaa tgggcatgct tctgacagga tccaacgcca aaagcatgga
3421 cctgggtacc acaccaggtg attgtggttg tccctacatc tacaagagag gaaatgacta
3481 tgtggtcatt ggagtccaca cggctgccgc tcgtggggga aacactgtca tatgtgccac
3541 ccaggggagt gagggagagg ctacacttga aggtggtgac aataaaggga catactgtgg
3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaagacca aattctggag
3661 atcgtccaca gcatcactcc cacctggcac ctatgaacca gcctatcttg gtggcaagga
3721 ccccagagtc aagggttgtc tctcactgca gcaagtcatg agggatcagt tgaagccatt
3781 tacagagccc aggggcaagc caccaaagcc aagtgtgttg gaagctgcca agaaaaccat
3841 catcaatgtc cttgagcaaa caattgatcc acctgagaaa tggtcattcg cacaagcttg
3901 cgcgtccctt gacaagacca cttccagtgg ccatccgcat cacatgcgga aaaacgactg
3961 ctggaacggg gagtccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat
4021 gtttgaagaa gggaagaaca tgaccccagt ctacacagct gcgcttaagg atgaattagt
4081 taaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggatttggc
4141 gaccatgatt cggtgtgctc gagcattcgg aggcctaatg gatgaactca aagcgcactg
4201 tgtcacactt cccattagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga
4261 gaggcattcc aggtacacat accactatga tgctgattac tctcgatggg attcaacaca
4321 acagagagcc gtgttggcag cagctctaga aatcatggtt aaattctccc cagaaccaca
4381 tttggctcag gtggtcgcag aagaccttct ttctcctagc gtggtggacg tgggtgactt
4441 cacaatatca atcaacgagg gtcttccctc tggggtgccc tgcacctccc aatggaactc
4501 catcgcccac tggcttctca ctctctgtgc gctctctgaa gttacaaact tgtctcctga
4561 caccatacag gctaattccc tcttctcttt ttatggtgat gatgaaattg ttagcacaga
4621 cataaaattg gacccagaga agttgacagc aaagctcagg gaatatgggt taaagccaac
4681 ccgccctgac aaaactgaag gaccccttgt catctctgaa gacttgaatg gcctgacttt
4741 cctgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaattgg agcagagttc
4801 aatactcagg caaatgtact ggactagggg ttccaaccat gaagacccat ctgaaacaat
4861 gattccacac tcccaaagac ccatacaatt gatgtcccta ctgggggaag ccgcactcca
4921 cggcccagca ttctacagca aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg
4981 catggatttt tacgtgccca ggcaagagcc aatgttcaga tggatgagat tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccac cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggcttt ggagcccgtt gttggtgccg cgattgcggc acctgtagcg ggccaacaaa
5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagtttacag
5281 tatcccctag aaacgctcca ggtgaaatat tatggagcgc gcccttgggc cctgatttga
5341 atccctacct ttcccatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc
5401 aggtaatcct cgcggggaac gcgttcaccg ccgggaaaat catatttgca gcagtcccac
5461 caaacttccc aactgaagtc ttgagcccca gccaggtcac tatgttcccc catataatag
5521 tagatgttag gcaactggaa cctgtgttga tccccctgcc tgatgttagg aataatctct
5581 atcattacaa tcaatcaaat gaccccacca tcagattgat agcaatgctg tatacaccac
5641 ttagggctaa caatgctggg gacgatgtct tcacagtctc ttgtcgagtt ctcacgagac
5701 catcccccga ttttgatttc atatttttgg tgccacccac agttgagtca agaactaaac
5761 cattctctgt cccaatctta actgttgagg agatgaccaa ttcaagattc cccattcctt
5821 tggaaaagtt gttcacgggt cccagcagtg cctttgttgt tcaaccacaa aatggcagat
5881 gcacgactga tggcgtgctc ttaggtacta cccaactgtc tcctgtcaac atctgcacct
5941 tcagagggga tgtcacccac attgcaggta ctcaaaatta cacaatgaat ctggcctccc
6001 aaaattggaa caattatgac ccaacagaag aaatcccagc ccctctggga accccagatt
6061 ttgtaggaag gatccaaggc gtgctcaccc aaaccacaag gagggatggc tcgacccgcg
6121 gtcacaaagc cacagtgagc actggaagtg tccactttac cccaaagctg ggcagtgttc
6181 aattctccac tgatacaagc aatgactttg aaactggcca aaacacgaga ttcaccccag
6241 tcggtgtcgt ccaggatggt agtaccaccc accaaaatga accccaacaa tgggtgctcc
6301 cagactattc aggtagagat agtcacaatg tacacctagc ccctgccgtg gcccccactt
6361 ttccgggtga gcaacttctt ttctttaggt ccactatgcc cggatgcagc gggtatccca
6421 acatgaattt ggattgccta ctcccccagg agtgggtgca gcacttctac caagagtcag
6481 ccccagcaca atctgatgtg gcactgctga gatttgtgaa tccagacaca ggcagggttt
6541 tgtttgagtg caagcttcat aaatcaggct atgtaacagt ggctcacact ggccaacatg
6601 atttggttat cccccccaat ggctatttca gatttgattc ctgggtcaac caattctaca
6661 cacttgcccc catgggaaat ggagcggggc gtagacgtgc attataatgg ctggagcttt
6721 ctttgctgga ttggcatctg atgtccttgg ctctggactt ggctctctaa tcaatgctgg
6781 ggctggggcc atcaaccaaa aagttgagtt tgaaaataac agaaaattgc aacaagcttc
6841 cttccaattt agcagcaacc tacaacaggc ttcctttcaa catgataaag agatgctcca
6901 agcacaaatt gaggccacca aaaagttgca acaggaaatg atgaaagtta aacaggcaat
6961 gctcctagag ggtgggttct ctgagacaga tgcagcccgt ggggcagtca acgcccccat
7021 gacaaaggct ttggactgga gcggaacaag gtactgggct cccgatgcta ggactacaac
7081 atacaatgca ggccgctttt ccactcctca accctcgggg gcatcgccag gaagaactaa
7141 tctcagggct actgtccccg ctcggggctc ctccagcaca ccttctaatg cttctgctgc
7201 tacttctgtg tactcaaatc aaactgcttc aacgagactt ggttctacag ctggttctgg
7261 taccagtgtc tcgagcctcc cgtcaactgc aagggctagg agctgggttg aggatcaaaa
7321 caggaatttg tcacctttca tgaggggggc ccacaacata tcgtttgtca ccccaccatc
7381 tagtagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg
7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga
7501 gtcacgggtg taatgtgaaa agacaaaatt gattatcttt cttttcttta gtgtctttt
//