Typing tool
|
Complete norovirus genomes
DQ078814 | GII.4 Hunter | ||
---|---|---|---|
GII.P4 Hunter |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7513LOCUS DQ078814 7559 bp RNA linear VRL 26-JUL-2016 DEFINITION Norovirus Hu/GII.4/Hunter504D/04O/AU, complete genome. ACCESSION DQ078814 VERSION DQ078814.2 KEYWORDS . SOURCE Norovirus Hu/GII.4/Hunter504D/04O/AU ORGANISM Norovirus Hu/GII.4/Hunter504D/04O/AU Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7559) AUTHORS Bull,R.A., Tu,E.T., McIver,C.J., Rawlinson,W.D. and White,P.A. TITLE Emergence of a New Norovirus Genotype II.4 Variant Associated with Global Outbreaks of Gastroenteritis JOURNAL J. Clin. Microbiol. 44 (2), 327-333 (2006) PUBMED 16455879 REFERENCE 2 (bases 1 to 7559) AUTHORS Bull,R.A., Tu,E.T.V., McIver,C.J., Rawlinson,W.D. and White,P.A. TITLE Direct Submission JOURNAL Submitted (30-MAY-2005) Biotechnology and Biomolecular Sciences, University of New South Wales, Anzac Parade, Sydney, NSW 2052, Australia REFERENCE 3 (bases 1 to 7559) AUTHORS Bull,R.A., Tu,E.T.V., McIver,C.J., Rawlinson,W.D. and White,P.A. TITLE Direct Submission JOURNAL Submitted (31-AUG-2009) Biotechnology and Biomolecular Sciences, University of New South Wales, Anzac Parade, Sydney, NSW 2052, Australia REMARK Sequence update by submitter COMMENT On Aug 31, 2009 this sequence version replaced DQ078814.1. FEATURES Location/Qualifiers source 1..7559 /organism="Norovirus Hu/GII.4/Hunter504D/04O/AU" /mol_type="genomic RNA" /strain="Hunter504D/04O" /isolate="Hu/GII.4/Hunter504D/04O/AU" /db_xref="taxon:332857" /country="Australia" misc_feature 1..4 /note="5'NTR" CDS 5..5104 /note="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="ACV32668.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP KQPPPREIPQRPPRPPTPELVKNIPPPPPNGEDEIAVSYSVKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LARVELTPLSLFWRPVYTPQYLISPDALKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDLIGK LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM PELKQALKNISIKKCQIVHNGCTYTLESDGKGNVRVDRVQSASVQTNNELTGALHHLR CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKDGC PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEDDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGCLSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5085..6707 /note="ORF2" /codon_start=1 /product="capsid protein" /protein_id="AAZ31396.2" /translation="MKMASNDATPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEVLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNLYHYNQSNDPTIRLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGRIQGVL TQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQFSTDTSNDFETGQNTRFTPVGVVQDG STTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD CLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" CDS 6707..7513 /note="ORF3" /codon_start=1 /product="VP2" /protein_id="ACV32669.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAVN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGASPGRTNLRATVPARGSSSTPS NASAATSVYSNQTASTRLGSTAGSGTSVSSLPSTARARSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" misc_feature 7514..7559 /note="3'NTR" ORIGIN 1 gtgaatgaag atggcctcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga 61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc 121 cctcggggcg cggcctaagc agcctccccc gagggaaata ccacaaagac ccccacgacc 181 acctactcca gaactggtca aaaatatccc ccctcccccg cccaacggag aggatgaaat 241 agcggtttct tatagtgtca aagatggtgt ttccggtttg cctgatcttt ccaccgtcag 301 gcaaccggaa gaatctaaca cggccttcag tgtccctcca ctcaatcaga gggagaatag 361 agatgctaag gagccactga ctggaacaat tctggaaatg tgggatggag aaatctacca 421 ttatggcctg tatgtggagc gaggtcttgt actaggtgtg cacaaaccac cagctgccat 481 tagcctcgct agggtcgaac taacaccact ctccttgttc tggagacctg tgtacactcc 541 tcagtacctc atctctccag acgctctcaa gaaattacac ggagagacgt tcccctacac 601 agcctttgac aacaactgct atgccttttg ctgctgggtc ctggacctaa acgactcgtg 661 gctgagtagg agaatgatcc agagaacaac tggcttcttc aggccctacc aagattggaa 721 taggaaaccc ctccccacca tggatgactc caagttaaag aaggtagcta acatattcct 781 gtgtgctctg tcttcgctat tcaccaggcc tataaaagat ttaataggga agctaaggcc 841 tcttaacatc ctcaacatct tggcctcatg tgactggact tttgcaggca tagtggagtc 901 cttgatactc ttggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttactcggtg attacgagct acaaggacct gaggaccttg cagtggagct 1021 cgtccctgta gtgatggggg gaattggttt ggtgctagga ttcaccaaag agaagattgg 1081 aaaaatgttg tcatctgctg catccacctt gagagcttgt aaagatcttg gtgcatatgg 1141 gctagagatc ctaaagttgg tcatgaagtg gttcttcccg aagaaagagg aagcaaatga 1201 actggctata gtgagatcca tcgaggatgc agtcctggat ctcgaggcaa ttgaaaacaa 1261 ccatatgacc actttgctca aagacaaaga cagtctggca acctacatga gaacccttga 1321 ccttgaggag gagaaagcca ggaaactctc aaccaagtct gcttcacctg acatcgtggg 1381 cacaatcaac gcccttctgg cgagaatcgc tgctgcacgt tctctggtgc atcgagcgaa 1441 ggaggaactt tccagcagac caagacctgt agtgttgatg atatcaggca gaccaggaat 1501 agggaagacc caccttgcta gggaagtggc taagagaatc gcagcctccc ttacaggaga 1561 ccagcgtgta ggcctcgtcc cacgcaatgg cgtcgaccat tgggatgcgt acaaggggga 1621 gagggtcgtc ctatgggacg actatggaat gagcaacccc atccacgatg ccctcaggtt 1681 gcaagaactc gctgacactt gccccctcac cctaaactgt gacaggattg agaataaagg 1741 aaaggtcttt gacagcgatg tcatcattat caccactaat ctggctaacc cagcaccact 1801 ggactatgtc aactttgaag catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc 1861 ccctgaggtc gaaaaggcga agcgtgactt cccaggccaa cccgacatgt ggaagaacgc 1921 cttcagttct gatttctcac acataaaact aacattggct ccacagggtg gcttcgacaa 1981 gaacgggaac accccacacg gaaagggcgt tatgaagact ctcaccactg gctcccttat 2041 tgcccgggca tcagggctac tccatgagag gctagatgaa ttcgaactac agggcccaac 2101 tctcaccacc ttcaactttg atcgcaataa agtgcttgcc tttagacaac ttgctgctga 2161 aaacaaatat gggttgatgg acacaatgaa agttggtagg cagctcaagg atgtcagaac 2221 aatgccagag cttaaacaag cactcaagaa tatctcaatc aagaagtgcc agatagtgca 2281 taatggttgc acctacacac ttgagtctga tggcaagggc aatgtgagag ttgacagagt 2341 tcaaagcgcc tccgtgcaga ccaacaatga gctgactggc gccctgcacc atctaaggtg 2401 cgccagaata agatactatg tcaggtgtgt ccaggaggcc ctgtattcca tcatccagat 2461 tgctggggct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aagacctatg 2521 gtccaagcca caagtggaaa acacagagga gactaccagc aaggacgggt gtccaaaacc 2581 caaagatgat gaggagttcg tcatttcatc cgacgacatc aaaactgagg gtaagaaagg 2641 gaagaacaag actggccgcg gcaagaagca cacagccttc tcaagcaaag gtctcagtga 2701 tgaagaggac gatgagtaca agaggattag agaagaaagg aatggcaagt actccataga 2761 agagtacctt caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgaccga 2821 ggaggacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttca ggccaacaag 2881 gaaacaacgc aaggaggaaa gagcttctct cggtttagtt acaggttctg aaattaggaa 2941 aagaaatcca gatgatttca aacccaaggg gaaactgtgg gctgacgatg atagaagtgt 3001 ggactacaat gagaaactca gttttgaagc cccaccaagc atctggtcga ggatagtcaa 3061 ctttggttca ggttggggat tctgggtctc ccccagtctg ttcataacat caacccatgt 3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aaacaaattc aggtacataa 3181 gtcaggcgaa ttctgtcgct tgagattccc aaaaccaatc aggactgatg tgacgggcat 3241 gatcttagaa gaaggtgcac ccgagggcac cgtggtcaca ctactcatca aaaggtccac 3301 tggagaactc atgcccctag cagctaggat ggggacccat gcaaccatga aaatccaagg 3361 gcgcactgtt ggaggtcaaa tgggcatgct tctgacagga tccaacgcca aaagcatgga 3421 cctgggtacc acaccaggtg attgtggttg tccctacatc tacaagagag gaaatgacta 3481 tgtggtcatt ggagtccaca cggctgccgc tcgtggggga aacactgtca tatgtgccac 3541 ccaggggagt gagggagagg ctacacttga aggtggtgac aataaaggga catactgtgg 3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaagacca aattctggag 3661 atcgtccaca gcatcactcc cacctggcac ctatgaacca gcctatcttg gtggcaagga 3721 ccccagagtc aagggttgtc tctcactgca gcaagtcatg agggatcagt tgaagccatt 3781 tacagagccc aggggcaagc caccaaagcc aagtgtgttg gaagctgcca agaaaaccat 3841 catcaatgtc cttgagcaaa caattgatcc acctgagaaa tggtcattcg cacaagcttg 3901 cgcgtccctt gacaagacca cttccagtgg ccatccgcat cacatgcgga aaaacgactg 3961 ctggaacggg gagtccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat 4021 gtttgaagaa gggaagaaca tgaccccagt ctacacagct gcgcttaagg atgaattagt 4081 taaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggatttggc 4141 gaccatgatt cggtgtgctc gagcattcgg aggcctaatg gatgaactca aagcgcactg 4201 tgtcacactt cccattagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga 4261 gaggcattcc aggtacacat accactatga tgctgattac tctcgatggg attcaacaca 4321 acagagagcc gtgttggcag cagctctaga aatcatggtt aaattctccc cagaaccaca 4381 tttggctcag gtggtcgcag aagaccttct ttctcctagc gtggtggacg tgggtgactt 4441 cacaatatca atcaacgagg gtcttccctc tggggtgccc tgcacctccc aatggaactc 4501 catcgcccac tggcttctca ctctctgtgc gctctctgaa gttacaaact tgtctcctga 4561 caccatacag gctaattccc tcttctcttt ttatggtgat gatgaaattg ttagcacaga 4621 cataaaattg gacccagaga agttgacagc aaagctcagg gaatatgggt taaagccaac 4681 ccgccctgac aaaactgaag gaccccttgt catctctgaa gacttgaatg gcctgacttt 4741 cctgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaattgg agcagagttc 4801 aatactcagg caaatgtact ggactagggg ttccaaccat gaagacccat ctgaaacaat 4861 gattccacac tcccaaagac ccatacaatt gatgtcccta ctgggggaag ccgcactcca 4921 cggcccagca ttctacagca aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg 4981 catggatttt tacgtgccca ggcaagagcc aatgttcaga tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 atgacgccac cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggcttt ggagcccgtt gttggtgccg cgattgcggc acctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagtttacag 5281 tatcccctag aaacgctcca ggtgaaatat tatggagcgc gcccttgggc cctgatttga 5341 atccctacct ttcccatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc 5401 aggtaatcct cgcggggaac gcgttcaccg ccgggaaaat catatttgca gcagtcccac 5461 caaacttccc aactgaagtc ttgagcccca gccaggtcac tatgttcccc catataatag 5521 tagatgttag gcaactggaa cctgtgttga tccccctgcc tgatgttagg aataatctct 5581 atcattacaa tcaatcaaat gaccccacca tcagattgat agcaatgctg tatacaccac 5641 ttagggctaa caatgctggg gacgatgtct tcacagtctc ttgtcgagtt ctcacgagac 5701 catcccccga ttttgatttc atatttttgg tgccacccac agttgagtca agaactaaac 5761 cattctctgt cccaatctta actgttgagg agatgaccaa ttcaagattc cccattcctt 5821 tggaaaagtt gttcacgggt cccagcagtg cctttgttgt tcaaccacaa aatggcagat 5881 gcacgactga tggcgtgctc ttaggtacta cccaactgtc tcctgtcaac atctgcacct 5941 tcagagggga tgtcacccac attgcaggta ctcaaaatta cacaatgaat ctggcctccc 6001 aaaattggaa caattatgac ccaacagaag aaatcccagc ccctctggga accccagatt 6061 ttgtaggaag gatccaaggc gtgctcaccc aaaccacaag gagggatggc tcgacccgcg 6121 gtcacaaagc cacagtgagc actggaagtg tccactttac cccaaagctg ggcagtgttc 6181 aattctccac tgatacaagc aatgactttg aaactggcca aaacacgaga ttcaccccag 6241 tcggtgtcgt ccaggatggt agtaccaccc accaaaatga accccaacaa tgggtgctcc 6301 cagactattc aggtagagat agtcacaatg tacacctagc ccctgccgtg gcccccactt 6361 ttccgggtga gcaacttctt ttctttaggt ccactatgcc cggatgcagc gggtatccca 6421 acatgaattt ggattgccta ctcccccagg agtgggtgca gcacttctac caagagtcag 6481 ccccagcaca atctgatgtg gcactgctga gatttgtgaa tccagacaca ggcagggttt 6541 tgtttgagtg caagcttcat aaatcaggct atgtaacagt ggctcacact ggccaacatg 6601 atttggttat cccccccaat ggctatttca gatttgattc ctgggtcaac caattctaca 6661 cacttgcccc catgggaaat ggagcggggc gtagacgtgc attataatgg ctggagcttt 6721 ctttgctgga ttggcatctg atgtccttgg ctctggactt ggctctctaa tcaatgctgg 6781 ggctggggcc atcaaccaaa aagttgagtt tgaaaataac agaaaattgc aacaagcttc 6841 cttccaattt agcagcaacc tacaacaggc ttcctttcaa catgataaag agatgctcca 6901 agcacaaatt gaggccacca aaaagttgca acaggaaatg atgaaagtta aacaggcaat 6961 gctcctagag ggtgggttct ctgagacaga tgcagcccgt ggggcagtca acgcccccat 7021 gacaaaggct ttggactgga gcggaacaag gtactgggct cccgatgcta ggactacaac 7081 atacaatgca ggccgctttt ccactcctca accctcgggg gcatcgccag gaagaactaa 7141 tctcagggct actgtccccg ctcggggctc ctccagcaca ccttctaatg cttctgctgc 7201 tacttctgtg tactcaaatc aaactgcttc aacgagactt ggttctacag ctggttctgg 7261 taccagtgtc tcgagcctcc cgtcaactgc aagggctagg agctgggttg aggatcaaaa 7321 caggaatttg tcacctttca tgaggggggc ccacaacata tcgtttgtca ccccaccatc 7381 tagtagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg 7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga 7501 gtcacgggtg taatgtgaaa agacaaaatt gattatcttt cttttcttta gtgtctttt //