Typing tool
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Typing tool
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Complete norovirus genomes
| AY823307 | GII.19 | |
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| GII.P11 |
ORF1: 1..784
ORF2: 768..2414
ORF3: 2414..3178
LOCUS AY823307 3229 bp RNA linear VRL 26-JUL-2016
DEFINITION Norovirus swine/GII/OH-QW218/03/US RNA-dependent RNA polymerase
gene, partial cds; and capsid protein and VP2 small basic protein
genes, complete cds.
ACCESSION AY823307
VERSION AY823307.1
KEYWORDS .
SOURCE Norovirus swine/GII/OH-QW218/03/US
ORGANISM Norovirus swine/GII/OH-QW218/03/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3229)
AUTHORS Wang,Q.H., Han,M.G., Cheetham,S., Souza,M., Funk,J.A. and Saif,L.J.
TITLE Porcine noroviruses related to human noroviruses
JOURNAL Emerging Infect. Dis. 11 (12), 1874-1881 (2005)
PUBMED 16485473
REFERENCE 2 (bases 1 to 3229)
AUTHORS Wang,Q. and Saif,L.J.
TITLE Direct Submission
JOURNAL Submitted (11-NOV-2004) Veterinary Preventive Medicine, The Ohio
State University, 1680 Madison Ave., Wooster, OH 44691, USA
FEATURES Location/Qualifiers
source 1..3229
/organism="Norovirus swine/GII/OH-QW218/03/US"
/mol_type="genomic RNA"
/strain="OH-QW218/03/US"
/host="swine"
/db_xref="taxon:316622"
/country="USA"
/note="genogroup II"
CDS <1..784
/note="ORF1"
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="AAX32885.1"
/translation="QQRGILAAALDIMVKFSAEPELAQVVAEDLLAPSVLDVGDFRIS
IVEGLPSGVPCTSQWNSFAHWLITLCAMSEVTGLSPDVIQAHSCFSFYGDDEIVSTDI
TLDPNMLTEKLKEYGLKPTRPDKTEGPLVIQKNLSGLTFLRRTIVRDPAGWFGKLDKD
SILRQLYWTRGPNHEDPMETMVPHSQRAIQLMALLGEASLHGSNFYGKVSRMVISEIK
EGGLEFYVPRHEAMFRWMRFSDLSTWEGDRNLAPSGVNEDGV"
CDS 768..2414
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="AAX32886.1"
/translation="MKMASSDAAPSSDGSAGLVPEVNSETMALEPVVGAPLAAPVAGQ
HNIIDPWIKLNFVQAPNGEFTVSPRNAPGEILLDLELGPDLNPYLAHLSRMYNAYAGG
MEVQVILAGNAFTAGKIIFAAVPPNFPLENLSAAQITMCPHIIVDVRQLEPVMLPMPD
VRNRLFHYNQVREPRLRLVAYLYTPLRANNAGDDVFTVSCRVLTRPSQDFEFMFLVPP
SVESKTKPFSLPNLTLAELSNSRFPLPIEQLYTNPLDNLVVQPQNGRCTIDGILLGTT
QLVPSLICSMRGTLEADQASGHTDDESVQSRAFNRQRSLMLENPDGSAFDPSDEVPAV
LGVPDFRGVVFGVLSQRNNGDTTRSHEAKIDTRRPRYAPKLGFVEVLTESDDFQNGPP
TKFTPVGLGGDGNPDFQQWALPDYGGALTNNTNLAPPVVPVYPGEQILFFRSQLPSSG
GTVAGWLDCLLPQEWIQHFYQDSAAAQSDVALVRYINPATGRVLFEAKLHRQGFLTVS
AAGPHPVVAPADGYFRFESWVNQFYTLAPMGNGSGRRRVY"
CDS 2414..3178
/note="ORF3"
/codon_start=1
/product="VP2 small basic protein"
/protein_id="AAX32887.1"
/translation="MAGMFLAGLASDIISGGLGSLINAGANAINQRVEYDFNKRLQAS
SFAHDKDMLQAQVAATRQLQQDLVQLKQDTLTSAGYLPSDAARASFGAPITKALDWNG
TRYWAPNSMGTSSYSGRFVHPSPSTPVQQPQRPHSVPPKTQPPADKWSDTSSVVSNST
ATTHLSSATTRSTRMSAQSDTTDRTRAWVNAHNLGPYMEGALQTAFVTPPSSRASSSG
SVSTVPEYVLDSWTPAFNTKRQPLFSHVRRRGESHV"
3'UTR 3179..3229
ORIGIN
1 ccaacagaga ggtattttgg ctgccgcact ggacatcatg gtgaagtttt ctgctgagcc
61 cgagttagct caggtggtgg ccgaggacct cctcgccccc agtgtccttg atgttggcga
121 ttttcgtatt tccattgtgg agggtcttcc ctccggggtt ccatgcacat cacaatggaa
181 ttcctttgcc cattggctga ttactctctg tgccatgtca gaggtgacgg gcctctcacc
241 cgacgtgatc caggcccatt cctgcttttc cttctatggt gatgatgaaa tcgtgagcac
301 agacatcacc ctggacccca acatgctcac agaaaagttg aaggaatacg gcctgaagcc
361 aactaggccg gacaagactg aaggacccct agtgattcaa aagaacctgt cagggttgac
421 tttcctgaga aggacgatag tccgcgaccc ggctggatgg ttcggcaagc ttgacaaaga
481 ttctattttg aggcagcttt actggaccag gggaccaaat cacgaagacc caatggaaac
541 tatggtgccc cattcgcaga gagcaataca actgatggcc ctgttgggag aagcctcact
601 acatggttct aacttctatg gcaaggtgag taggatggtg ataagtgaga tcaaagaagg
661 tggtctggag ttttacgtgc ccagacatga ggccatgttc cgctggatgc gattttcaga
721 cctcagcacg tgggagggcg atcgcaatct ggctcccagt ggtgtgaatg aagatggcgt
781 ctagtgacgc tgctccatct agtgatggca gtgccggtct cgtaccagag gtcaacagtg
841 agaccatggc cctggaaccc gtggtgggtg ctccccttgc cgcacccgtt gcgggacaac
901 ataacataat tgacccctgg attaagttaa attttgttca agcccctaat ggtgaattta
961 cagtgtcccc ccgtaatgcc ccgggtgaaa ttcttttaga tttggagcta ggacctgacc
1021 tgaatcccta tttggcccat ttgtccagaa tgtataatgc atatgcaggg ggtatggaag
1081 tgcaagttat tttggcaggt aatgctttta cggcagggaa aattattttc gctgcggtgc
1141 cacccaattt tccccttgaa aatttgagtg cagcccaaat taccatgtgc ccccacatta
1201 tagttgatgt gagacaatta gaaccagtta tgctccccat gcctgatgtg aggaataggc
1261 tttttcacta taatcaagtc agggaaccta gactcagatt ggtggcctat ctctacacgc
1321 ccttgagagc aaataacgcg ggtgatgacg tttttacagt ctcgtgccgc gttttgacca
1381 ggccatcaca ggattttgag tttatgtttt tggtccctcc ttcagttgag tctaagacta
1441 agcccttttc cctccccaac cttaccctag ctgagctttc taattctaga tttcccttgc
1501 ccatagaaca actttataca aatccccttg ataatttggt ggttcagccg cagaatggga
1561 ggtgcaccat cgatgggatt ttacttggga cgacacagct ggttccttca ttgatttgtt
1621 cgatgagggg taccttggag gcagaccaag catcggggca cactgatgac gagagtgtgc
1681 agtcgcgtgc gttcaaccgc caacgaagcc ttatgttgga gaaccctgac gggtcggctt
1741 ttgacccatc ggatgaagtc cccgcggtgc ttggtgtccc agacttccgc ggggttgttt
1801 ttggtgtcct cagccagaga aataacggcg acaccaccag atcgcatgag gccaagattg
1861 acacgcgccg accacgctat gctcccaagc tgggttttgt cgaggtgctc actgagagtg
1921 atgatttcca aaacggacct cccacaaaat ttacaccggt tggcctgggg ggggatggca
1981 atccggattt ccaacagtgg gccctccctg attatggcgg tgcattgacc aacaatacca
2041 accttgctcc acccgttgtg cccgtgtacc caggtgaaca aattcttttc tttcgctccc
2101 aacttccaag ctcaggtggt acagttgctg ggtggcttga ttgtctccta cctcaagagt
2161 ggatccagca tttttaccag gactctgcag cagctcagag tgacgtggcc ttggttagat
2221 acatcaaccc cgccacaggc agggtccttt ttgaggccaa gctccaccga caaggctttt
2281 tgaccgtgtc agccgccggg ccccatcccg tagtggcacc agctgatggc tattttaggt
2341 tcgagtcctg ggtgaatcaa ttttacactt tggcccccat gggaaatgga agtgggcgta
2401 ggagggttta ttaatggcag ggatgttttt ggctggttta gcttcagata taatttctgg
2461 tggtttgggc tccttaatta atgctggtgc taatgccatt aatcaaaggg ttgagtatga
2521 ttttaacaag aggttacagg cttcctcttt tgctcatgac aaggatatgt tgcaagcgca
2581 ggtcgctgca actaggcaac tccaacagga ccttgtgcaa ttgaaacagg acactttgac
2641 atcggcaggg tatttgccct ctgatgcagc tagagcctca tttggggcgc ctataaccaa
2701 ggctcttgac tggaacggca cgaggtactg ggcccctaac tccatgggca cctccagcta
2761 ctctggtcgc tttgtgcacc cgagccccag tacaccagtt cagcagcctc agagacccca
2821 cagtgtgcct ccgaagacac aaccccctgc tgacaaatgg tctgacactt cctcggtcgt
2881 ctccaactcg accgctacaa cccacctatc cagtgccacg accaggtcca ccagaatgtc
2941 ggcccagtca gacacaactg acaggaccag ggcatgggtc aacgcccata acctgggacc
3001 ctacatggaa ggtgccttac agactgcttt tgtcaccccc ccatctagca gggcctctag
3061 ttcgggttca gtctcaaccg tgcccgaata tgttttggac tcttggactc ctgctttcaa
3121 tacaaaaagg cagcctctct tttcacatgt tcgcagaagg ggagagtcac atgtttgaat
3181 gttagtgaaa gattttctat ttctttcttt cttttctgtt gaagatctt
//