Typing tool
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Complete norovirus genomes
AY823306 | GII.19 | ||
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GII.P11 |
ORF1: 1..784 ORF2: 768..2414 ORF3: 2414..3178LOCUS AY823306 3229 bp RNA linear VRL 26-JUL-2016 DEFINITION Norovirus swine/GII/OH-QW170/03/US RNA-dependent RNA polymerase gene, partial cds; and capsid protein and VP2 small basic protein genes, complete cds. ACCESSION AY823306 VERSION AY823306.1 KEYWORDS . SOURCE Norovirus swine/GII/OH-QW170/03/US ORGANISM Norovirus swine/GII/OH-QW170/03/US Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3229) AUTHORS Wang,Q.H., Han,M.G., Cheetham,S., Souza,M., Funk,J.A. and Saif,L.J. TITLE Porcine noroviruses related to human noroviruses JOURNAL Emerging Infect. Dis. 11 (12), 1874-1881 (2005) PUBMED 16485473 REFERENCE 2 (bases 1 to 3229) AUTHORS Wang,Q. and Saif,L.J. TITLE Direct Submission JOURNAL Submitted (11-NOV-2004) Veterinary Preventive Medicine, The Ohio State University, 1680 Madison Ave., Wooster, OH 44691, USA FEATURES Location/Qualifiers source 1..3229 /organism="Norovirus swine/GII/OH-QW170/03/US" /mol_type="genomic RNA" /strain="OH-QW170/03/US" /host="swine" /db_xref="taxon:316621" /country="USA" /note="genogroup II" CDS <1..784 /note="ORF1" /codon_start=2 /product="RNA-dependent RNA polymerase" /protein_id="AAX32882.1" /translation="QQRGILAAALDIMVKFSAEPELAQVVAEDLLAPSVLDVGDFRIS IVEGLPSGVPCTSQWNSFAHWLITLCAMSEVTGLSPDVIQAHSCFSFYGDDEIVSTDI TLDPNMLTEKLKEYGLKPTRPDKTEGPLVIQKNLSGLTFLRRTIVRDPAGWFGKLDKD SILRQLYWTRGPNHEDPMETMVPHSQRAIQLMALLGEASLHGSNFYGKVSRMVISEIK EGGLEFYVPRHEAMFRWMRFSDLSTWEGDRNLAPSGVNEDGV" CDS 768..2414 /note="ORF2" /codon_start=1 /product="capsid protein" /protein_id="AAX32883.1" /translation="MKMASSDAAPSSDGSAGLVPEVNSETMALEPVVGAPLAAPVAGQ HNIIDPWIKLNFVQAPNGEFTVSPRNAPGEILLDLELGPDLNPYLAHLSRMYNAYAGG MEVQVILAGNAFTAGKIIFAAVPPNFPLENLSAAQITMCPHIIVDVRQLEPVMLPMPD VRNRLFHYNQVREPRLRLVAYLYTPLRANNAGDDVFTVSCRVLTRPSQDFEFMFLVPP SVESKTKPFSLPNLTLAELSNSRFPLPIEQLYTNPLDNLVVQPQNGRCTIDGILLGTT QLVPSLICSMRGTLEADQASGHTDDESVQSRAFNRQRSLMLENPDGSAFDPSDEVPAV LGVPDFRGVVFGVLSQRNNGDTTRSHEAKIDTRRPRYAPKLGFVEVLTESDDFQNGPP TKFTPVGLGGDGNPDFQQWALPDYGGALTNNTNLAPPVVPVYPGEQILFFRSQLPSSG GTVAGWLDCLLPQEWIQHFYQDSAAAQSDVALVRYINPATGRVLFEAKLHRQGFLTVS AAGPHPVVAPADGYFRFESWVNQFYTLAPMGNGSGRRRVY" CDS 2414..3178 /note="ORF3" /codon_start=1 /product="VP2 small basic protein" /protein_id="AAX32884.1" /translation="MAGMFLAGLASDIISGGLGSLINAGANAINQRVEYDFNKRLQAS SFAHDKDMLQAQVAATRQLQQDLVQLKQDTLTSAGYLPSDAARASFGAPITKALDWNG TRYWAPNSMGTSSYSGRFVHPSPSTPVQQPQRPHSVPPKTQPPADKWSDTSSVVSNST ATTHLSSATTRSTRMSAQSDTTDRTRAWVNAHNLGPYMEGALQTAFVTPPSSRASSSG SVSTVPEYVLDSWTPAFNTKRQPLFSHVRRRGESHV" 3'UTR 3179..3229 ORIGIN 1 ccaacagaga ggtattttgg ctgccgcact ggacatcatg gtgaagtttt ctgctgagcc 61 cgagttagct caggtggtgg ccgaggacct cctcgccccc agtgtccttg atgttggcga 121 ttttcgtatt tccattgtgg agggtcttcc ctccggggtt ccatgcacat cacaatggaa 181 ttcctttgcc cattggctga ttactctctg tgccatgtca gaggtgacgg gcctctcacc 241 cgacgtgatc caggcccatt cctgcttttc cttctatggt gatgatgaaa tcgtgagcac 301 agacatcacc ctggacccca acatgctcac agaaaagttg aaggaatacg gcctgaagcc 361 aactaggccg gacaagactg aaggacccct agtgattcaa aagaacctgt cagggttgac 421 tttcctgaga aggacgatag tccgcgaccc ggctggatgg ttcggcaagc ttgacaaaga 481 ttctattttg aggcagcttt actggaccag gggaccaaat cacgaagacc caatggaaac 541 tatggtgccc cattcgcaga gagcaataca actgatggcc ctgttgggag aagcctcact 601 acatggttct aacttctatg gcaaggtgag taggatggtg ataagtgaga tcaaagaagg 661 tggtctggag ttttacgtgc ccagacatga ggccatgttc cgctggatgc gattttcaga 721 cctcagcacg tgggagggcg atcgcaatct ggctcccagt ggtgtgaatg aagatggcgt 781 ctagtgacgc tgctccatct agtgatggca gtgccggtct cgtaccagag gtcaacagtg 841 agaccatggc cctggaaccc gtggtgggtg ctccccttgc cgcacccgtt gcgggacaac 901 ataacataat tgacccctgg attaagttaa attttgttca agcccctaat ggtgaattta 961 cagtgtcccc ccgtaatgcc ccgggtgaaa ttcttttaga tttggagcta ggacctgacc 1021 tgaatcccta tttggcccat ttgtccagaa tgtataatgc atatgcaggg ggtatggaag 1081 tgcaagttat tttggcaggt aatgctttta cggcagggaa aattattttc gctgcggtgc 1141 cacccaattt tccccttgaa aatttgagtg cagcccaaat taccatgtgc ccccacatta 1201 tagttgatgt gagacaatta gaaccagtta tgctccccat gcctgatgtg aggaataggc 1261 tttttcacta taatcaagtc agggaaccta gactcagatt ggtggcctat ctctacacgc 1321 ccttgagagc aaataacgcg ggtgatgacg tttttacagt ctcgtgccgc gttttgacca 1381 ggccatcaca ggattttgag tttatgtttt tggtccctcc ttcagttgag tctaagacta 1441 agcccttttc cctccccaac cttaccctag ctgagctttc taattctaga tttcccttgc 1501 ccatagaaca actttataca aatccccttg ataatttggt ggttcagccg cagaatggga 1561 ggtgcaccat cgatgggatt ttacttggga cgacacagct ggttccttca ttgatttgtt 1621 cgatgagggg taccttggag gcagaccaag catcggggca cactgatgac gagagtgtgc 1681 agtcgcgtgc gttcaaccgc caacgaagcc ttatgttgga gaaccctgac gggtcggctt 1741 ttgacccatc ggatgaagtc cccgcggtgc ttggtgtccc agacttccgc ggggttgttt 1801 ttggtgtcct cagccagaga aataacggcg acaccaccag atcgcatgag gccaagattg 1861 acacgcgccg accacgctat gctcccaagc tgggttttgt cgaggtgctc actgagagtg 1921 atgatttcca aaacggacct cccacaaaat ttacaccggt tggcctgggg ggggatggca 1981 atccggattt ccaacagtgg gccctccctg attatggcgg tgcattgacc aacaatacca 2041 accttgctcc acccgttgtg cccgtgtacc caggtgaaca aattcttttc tttcgctccc 2101 aacttccaag ctcaggtggt acagttgctg ggtggcttga ttgtctccta cctcaagagt 2161 ggatccagca tttttaccag gactctgcag cagctcagag tgacgtggcc ttggttagat 2221 acatcaaccc cgccacaggc agggtccttt ttgaggccaa gctccaccga caaggctttt 2281 tgaccgtgtc agccgccggg ccccatcccg tagtggcacc agctgatggc tattttaggt 2341 tcgagtcctg ggtgaatcaa ttttacactt tggcccccat gggaaatgga agtgggcgta 2401 ggagggttta ttaatggcag ggatgttttt ggctggttta gcttcagata taatttctgg 2461 tggtttgggc tccttaatta atgctggtgc taatgccatt aatcaaaggg ttgagtatga 2521 ttttaacaag aggttacagg cttcctcttt tgctcatgac aaggatatgt tgcaagcgca 2581 ggtcgctgca actaggcaac tccaacagga ccttgtgcaa ttgaaacagg acactttgac 2641 atcggcaggg tatttgccct ctgatgcagc tagagcctca tttggggcgc ctataaccaa 2701 ggctcttgac tggaacggca cgaggtactg ggcccctaac tccatgggca cctccagcta 2761 ctctggtcgc tttgtgcacc cgagccccag tacaccagtt cagcagcctc agagacccca 2821 cagtgtgcct ccgaagacac aaccccctgc tgacaaatgg tctgacactt cctcggtcgt 2881 ctccaactcg accgctacaa cccacctatc cagtgccacg accaggtcca ccagaatgtc 2941 ggcccagtca gacacaactg acaggaccag ggcatgggtc aacgcccata acctgggacc 3001 ctacatggaa ggtgccttac agactgcttt tgtcaccccc ccatctagca gggcctctag 3061 ttcgggttca gtctcaaccg tgcccgaata tgttttggac tcttggactc ctgctttcaa 3121 tacaaaaagg cagcctctct tttcacatgt tcgcagaagg ggagagtcac atgtttgaat 3181 gttagtgaaa gattttctat ttctttcttt cttttctgtt gaagatctt //