Typing tool
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Typing tool
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Complete norovirus genomes
| AY823305 | GII.18 | |
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| GII.P18 |
ORF1: 8..5083
ORF2: 5064..6737
ORF3: 6737..7564
LOCUS AY823305 7612 bp RNA linear VRL 27-JUN-2012
DEFINITION Norovirus swine/GII/OH-QW125/03/US, complete genome.
ACCESSION AY823305
VERSION AY823305.2
KEYWORDS .
SOURCE Norovirus swine/GII/OH-QW125/03/US
ORGANISM Norovirus swine/GII/OH-QW125/03/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7612)
AUTHORS Wang,Q.H., Han,M.G., Cheetham,S., Souza,M., Funk,J.A. and Saif,L.J.
TITLE Porcine noroviruses related to human noroviruses
JOURNAL Emerging Infect. Dis. 11 (12), 1874-1881 (2005)
PUBMED 16485473
REFERENCE 2 (bases 1 to 7612)
AUTHORS Wang,Q. and Saif,L.J.
TITLE Direct Submission
JOURNAL Submitted (11-NOV-2004) Veterinary Preventive Medicine, The Ohio
State University, 1680 Madison Ave., Wooster, OH 44691, USA
REFERENCE 3 (bases 1 to 7612)
AUTHORS Oka,T., Wang,Q. and Saif,L.J.
TITLE Direct Submission
JOURNAL Submitted (27-JUN-2012) Veterinary Preventive Medicine, The Ohio
State University, 1680 Madison Ave., Wooster, OH 44691, USA
REMARK Sequence update by submitter
COMMENT On Jun 27, 2012 this sequence version replaced AY823305.1.
FEATURES Location/Qualifiers
source 1..7612
/organism="Norovirus swine/GII/OH-QW125/03/US"
/mol_type="genomic RNA"
/strain="OH-QW125/03/US"
/host="swine"
/db_xref="taxon:316620"
/country="USA"
/note="genogroup II"
CDS 8..5083
/note="ORF1"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="AAX32879.2"
/translation="MMASNDVNVAAGDNTNGNEKQTKMPTSGIFTNVKVGIKKILGDR
DCDAQPPAPTPREKPEPPPPPEETVAGEPPPEGCVAYHKDGDRIDGLPRGPADAEPKC
MAYSAPPPHEREDGPAMEPLPGSILEMWDGEIYHYGLYVNDGLVLGVHRPASAICTAT
IELTPLSLYWRVVHVPQNVIPSETLKRLAGEKFPYTAFDNNCYAFCCWVLDLNDSWLS
RKMINRTTGFYKPYQVWNRKPLPTMDDGKMKKVTNVLLCALSSLFTRPIKDVIGSLKP
LNLLNLLASCDWTFGGIVETLVLVGELFGIFWTPPDVSAFLAPLLGDYELQGPQDLAT
ELVPILMGGVGMLLGFTTEKIGRMFTSAANTLRSCRDIGAYGLDVLKLIMKWFFPKAD
EESELAMVRSIEDAVLDMEAIENNHLTSLLKDRDSLATFMKTLDVEEEKARRLSTKSA
SPDIVGTINALLARISAARSLVHRAKEEMSNRVKPVVVMISGRPGIGKTHMARELARK
IGATMSGDQRVGLVPRNGVDHWDAYKGERIVLWDDYGMSNPVKDALTLQELADTCPVT
LNCDRIENKGKMFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPDVEKAKR
DFPGQPDMWKGAFKDDSSHIKLSLAPQGGFDKNGNTPYGKGVMKTLTQASLTARVLGL
VHERIDEFELQGDTGAVYNFDNNKIGAFRKLAADNKYGLMETMRVGAKLQSVKNIDQL
RANLRDITIKPCLIIYNSSTYSLESNGKGNVVIKKVENQVVQSRNTIHTAILRMKQAK
IRYYIKCIQEAIYSLLQVAGASFVVARITRKFTRDAWSHWDNTPDQAPPVPTPPQDAS
WEIAAADVTPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYL
QDRDRFYEELTIAQATEENFGDDDEMRLRQRIFRPSKKQRKEERGVLGLVTGSEIRKR
KPDDFKPRGNLWADDNREVDYSAKIDFEAPPSVWSRIVNFGTGWAFWVSPSLLITSTH
VIPRGITEAFGVPIEQIQVHRSGEFCRFRFPKPIRPDVSGMILEEGAPEGTVCSILIK
RTTGEMMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKNMDLGTTPGDCGCPYIYK
RGNDYVVAGVHTAAARGGNTVVCATQGPEGEAALEGSGSFGTYCGAPILGVGDAPKLS
TKTKFWRSSTTPLPPGTYEPAYLGGKDPRVEGGPSLQQVMRDQLKPFTEPRGKMPKPA
TLESAKATIINVLDQTLDPPKKWTYAQACQSLDKTTSSGHPHHVRKNDHWNGDSFTGP
LADQASKANLMYEQGKHMQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMVRCAR
AFGGLLDELKANCINLPCRVGININEDGPAIFERHSRYTYHLDADYSRWDSTQQRAIL
ATAMEIMVRFSPEPELAQVVVEDLLSPSVLDIGDFKISVLEGLPSGVPCTSQWNSIAH
WLLTLCAISESTGLSPDVVQAYSCFSFYGDDEIISTDIEIKPEVLTEKLKSYGLIPTR
PDKSEGPLVISKDLSGLTFLRRTITRDPSGWFGKLDKDSILRQLYWTRGPNHDDPYET
MTTHSQRATQLMALLGEASLHGAAFYSKVSKLVVTEIKESGLEFYVPRQEAMFRWMRF
SDLSTWEGDRNLAPEGVNDDGIE"
CDS 5064..6737
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="AAX32880.1"
/translation="MMMASNDATAPTDGAAGLVPEVTNETMALEPVAGAALAAPVVGQ
HNVIDPWIRGNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVVLAGNAFAAGKIIFAAVPPSFPVDALSAPTITMCPHVIVDVRQLEPVLLPMPD
VRNNFFHYNQSSDPKLRLVAMLYTPLRANSPTDDVFTVSCRVLTRPSPDFEFTFLIPP
TVESKSKPFTIPQLTLSELSNSRFPAPIDMLYTSPNDNIVVQPQNGRCTLGGELQGTT
QLQPSLICSFRGVTLNETSRMLVDQEEEEEGEVQRPQARAFNHEYHLQLQNLDGTDYD
PAGDLPATLGAPDFIGTVYGVVSQRTTRDSAARAHEAKITTSDPRYAPKLGSVEFVTE
STDIVLNDQTKFTPVGLAHNRAVDYKQWELPHYAGELTANTNLAPPVAPVYPGEQLLF
FRSNLPLAGGTAASVLDCLLPQEWIQHFYQESFAPQSDIALLRYVNPDTGRVLFEAKL
HRQGYITVAGAGTSPVAVPPNGYFRFESWVSQFYTLAPMGSGTGRRRNQ"
CDS 6737..7564
/note="ORF3"
/codon_start=1
/product="VP2 small basic protein"
/protein_id="AAX32881.1"
/translation="MAGQIIAGIAADLFSSGLGSLINAGTNALNQKVEYDFNKKLQSA
SFAHDREMLQAQVAATRQLQQDMIKIKEDTLMLAGFSPSDAARGSVNAPMTKVLDWNG
TRYWAPGAMRTSSYSGRFSSQVPQTTFYKEPPKIPSSQAKPNPRPDPKPPATQQPQSA
PAPSGSSSGSGSVSSHSTQSTSLSTVRSPNSTLSRTASWVLSQNLEPFMPGSLNISGV
TPPSDTFSSRSSVSSRSSLSGTVSTVPKEILDSWTPAFNTRRQPLFARLRRRGESQV"
3'UTR 7565..7612
ORIGIN
1 gtgaataatg atggcgtcta acgacgtcaa cgttgccgct ggcgacaaca ccaatggcaa
61 tgaaaagcaa acaaaaatgc ccacctcggg catttttacc aacgtcaagg ttggtattaa
121 aaagatcctg ggtgatcgcg attgcgatgc ccagcccccc gcccccacac cgcgggagaa
181 accggagcca cccccccctc ctgaggaaac cgttgcgggg gaacccccac ctgagggctg
241 tgtggcttat cacaaggatg gtgacaggat cgacgggctc cctaggggac ccgccgacgc
301 cgaacccaag tgcatggctt atagcgcccc ccctccccac gaaagagaag atggacctgc
361 aatggagccg ctcccaggct ccattcttga gatgtgggat ggtgaaatat atcactacgg
421 gctctatgtc aacgacggcc tagttcttgg agtccaccgc cccgcatctg ccatttgcac
481 cgccaccatt gagttaaccc cactctcact ctactggcgt gtggtgcacg ttcctcagaa
541 cgttattcca tcagagacac tcaagcgctt ggctggagaa aagttcccct atacggcatt
601 tgataacaat tgctatgcat tctgctgctg ggttttagac ttgaacgatt cctggctgtc
661 ccgcaagatg ataaatcgta ccaccggctt ttacaaaccc tatcaggtct ggaacaggaa
721 gcccctcccc accatggatg atggaaagat gaagaaagtg acaaatgttt tgctctgtgc
781 cctatcttcc ctcttcaccc gcccgatcaa ggacgtgatc ggcagcttga agccccttaa
841 tttacttaat ttgctggcat catgtgattg gacattcggt gggatcgtcg agaccctagt
901 ccttgttggt gagctttttg ggatattctg gactcccccg gatgtttcag ccttccttgc
961 ccccctgctt ggcgattatg agctccaggg gccccaagac ctggccacgg agcttgtgcc
1021 catactcatg ggtggggtcg ggatgttgct tggtttcacc acagagaaga tagggcgcat
1081 gttcacctca gcagcgaata ccctgcggtc gtgccgagac atcggggcct atgggctgga
1141 cgtcctcaag ctaatcatga aatggttctt ccccaaggcc gatgaggaga gtgagcttgc
1201 aatggtccgg tcaatagaag atgctgtgct agacatggag gctatcgaaa ataaccatct
1261 cacctccttg cttaaagaca gggacagcct tgccaccttc atgaagacac ttgatgttga
1321 ggaagaaaaa gcaagacgcc tctcaactaa gtcagcatct cctgacatag tgggaaccat
1381 aaatgccctc cttgcgcgca tctctgcggc gcgctcccta gtacaccgag caaaggagga
1441 aatgtccaac cgagtgaaac cggttgtggt tatgatctcg ggcaggcccg ggattgggaa
1501 gacacacatg gcccgggaac tagcacggaa aatcggtgcc acgatgtcag gtgaccagag
1561 agttgggttg gttccaagaa atggtgtcga tcactgggac gcctataagg gagaaaggat
1621 agtcctgtgg gacgactatg gtatgagtaa ccctgttaag gatgccctga cactacagga
1681 gttggccgac acctgccccg tgaccttaaa ttgtgacagg atagaaaaca aaggaaagat
1741 gtttgatagt gatgtcatta taataacaac caatcttgca aaccctgccc ccttggacta
1801 tgtcaacttt gaggcgtgtt cacgtcgcat agatttccta gtctatgctg aagcacctga
1861 cgtggagaag gctaagaggg attttcctgg acagcctgac atgtggaagg gggcctttaa
1921 agatgattcg tcccatatca aactttcact tgctccccaa ggtggctttg acaagaatgg
1981 caacaccccc tacggcaagg gtgtcatgaa gaccctgact caggcctccc tcacggcacg
2041 tgttctaggg ttagtccatg agagaattga tgaattcgaa ctgcagggtg atacgggtgc
2101 cgtttacaac tttgataata ataagattgg ggcattcaga aagctcgcag ccgacaacaa
2161 atacggcttg atggagacaa tgagagtggg ggccaaacta cagagtgtca agaacattga
2221 ccaactccgc gccaacctgc gggacataac tatcaagccc tgcctgatta tttataatag
2281 ttccacctac tccttagagt caaatggcaa aggcaatgtg gttatcaaga aggttgagaa
2341 ccaggttgtc cagtccagaa acaccatcca cactgccatc ctcaggatga aacaagcaaa
2401 gattaggtat tacatcaagt gtatccaaga ggcaatctac tccctgttgc aggtggcggg
2461 ggcttcattt gtcgttgcaa ggatcacgcg gaaattcaca cgcgacgcgt ggtcccactg
2521 ggacaacacc cctgaccagg ctccccccgt acccacacca ccacaggatg cctcctggga
2581 aatagctgcc gccgatgtca cacccgaggg caagaaagga aagaacaaaa agggcagagg
2641 aaagaaacac acagccttct caagtaaagg cctgagtgat gaggaatacg atgaatacaa
2701 gaggatcagg gaggaaagaa atggtaagta ctctattgag gaatatctgc aagacaggga
2761 ccgcttctat gaagagctca ccatagccca ggccactgaa gagaactttg gggatgatga
2821 cgagatgcga ctcaggcaac gcatctttag accaagcaag aagcagcgca aagaggagcg
2881 cggggttttg ggtctagtca caggttcaga gatccggaaa agaaaacccg atgacttcaa
2941 accccgtgga aacctgtggg ccgatgataa cagagaggtg gactacagtg caaagataga
3001 ttttgaggca cccccaagtg tttggtctcg cattgtcaac tttggcacgg gctgggcgtt
3061 ttgggtctct cccagtctac tcataacatc aacacatgtt ataccaagag gtatcactga
3121 agcctttggg gtgccaattg agcagatcca ggtccacaga tcaggggagt tttgtcgttt
3181 ccgcttcccg aaacccatcc gacccgacgt ttcaggcatg attctagagg agggagcccc
3241 tgagggcacc gtgtgttcca tcttgatcaa gagaacaact ggtgaaatga tgccgctcgc
3301 tgtccgtatg ggaacccatg ctacgatgaa gatacaaggg cggacggtcg gcggtcaaat
3361 gggaatgctg ctcactgggt ccaacgccaa gaacatggac ttgggcacga cccctggcga
3421 ttgtgggtgt ccttacatct ataagagagg taacgactat gtggtggctg gagtccacac
3481 agctgccgct aggggtggga acaccgtggt ctgtgccaca cagggccccg agggtgaggc
3541 agctctggag ggtagtggaa gctttggcac ttactgtggg gcgccaatat tgggtgtagg
3601 agacgctccc aaactcagca ccaaaaccaa attctggagg tcttcaacca ctcccctccc
3661 gccagggact tatgagcctg cctaccttgg cgggaaagat ccccgtgtgg agggaggccc
3721 ctcacttcag caggttatga gagaccaact caagcccttt acagaaccca gaggaaagat
3781 gccaaaacct gctactcttg agtcggccaa ggccacgata atcaatgtct tagaccaaac
3841 cctggatccc cccaagaaat ggacatatgc tcaggcctgt caatccctgg acaaaaccac
3901 ctccagcggg cacccacacc acgtccggaa gaacgaccac tggaatggtg actctttcac
3961 gggccccctc gctgaccaag catccaaggc caacttgatg tacgagcagg gcaagcatat
4021 gcaaccagtc tatactgcag cgttgaaaga tgagcttgtg aagactgata agatctacaa
4081 gaagatcaag aaacggctcc tttgggggtc tgacttaggg accatggtaa ggtgtgcacg
4141 tgcctttggc gggctgctag atgaactcaa ggcaaactgc atcaacctgc cttgcagggt
4201 tgggataaac atcaatgaag atggtcccgc catctttgag agacactcca gatacaccta
4261 ccacctggat gctgattatt caagatggga ttcaacgcaa caaagggcca tccttgccac
4321 ggccatggag atcatggttc gcttctcacc cgagcccgag cttgcccagg tggtggtcga
4381 ggacctcctt tcacccagcg tccttgacat tggtgacttc aagatctcgg tccttgaagg
4441 cctgccctca ggcgtccctt gcacatcaca gtggaactcc atagcgcatt ggcttctaac
4501 actctgtgca atctctgagt caacagggct ttcccctgat gtggtgcaag cttactcgtg
4561 cttctccttc tatggtgatg atgagatcat aagcacggac atagagatca aaccagaggt
4621 tctcacagaa aagctcaaga gctatggttt aatacccacc agaccagaca aaagcgaggg
4681 gccactagtc attagcaaag acctgtccgg gttgactttc ctgaggcgga ccataacccg
4741 tgacccatca ggttggtttg gaaaattgga caaggactcc attttgaggc agctttactg
4801 gaccaggggg cccaaccatg atgaccccta tgagaccatg accacacact cacagagagc
4861 cacacagctt atggcactac ttggggaagc ctcattgcat ggcgcagcct tttacagcaa
4921 ggtcagtaag ctagtggtga cagaaatcaa agaaagtggc ctggagtttt acgtgcccag
4981 gcaagaggcc atgtttaggt ggatgaggtt ttctgacctc agcacgtggg agggcgatcg
5041 caatctggct cccgagggtg tgaatgatga tggcatcgaa tgatgctacc gctccgactg
5101 atggagctgc cggtctcgtc ccagaggtca ccaatgagac catggcactg gaacccgtcg
5161 caggggcggc cttggccgcg cctgtcgtag ggcagcataa cgttattgac ccctggatta
5221 gaggtaattt tgtgcaagcc cctaatggag aatttacagt ttccccccgt aattcccctg
5281 gagaggtttt actaaatttg gaattaggcc ctgaattaaa cccttatctg gctcatcttg
5341 cccgtatgta caacgggtac gctggtggaa tggaggttca ggtggtgctc gctgggaatg
5401 cgttcgcagc ggggaaaatc atctttgctg ccgttccacc aagtttccca gttgatgctt
5461 tgagcgcgcc cacgataaca atgtgccccc acgttatagt ggatgtgaga caactggagc
5521 cagtattgct ccctatgcca gatgttagga ataatttctt tcattataac cagagttctg
5581 accccaagct tcgattggtt gcaatgcttt atacgccctt gagagccaat agcccaactg
5641 atgatgtgtt tactgtgtct tgtagagttc ttacgaggcc atcccctgat tttgagttca
5701 cctttttgat accacccaca gttgagtcca aaagcaagcc ttttaccatt ccccagctta
5761 ccttgtctga gttgtctaat tcaagatttc ctgcacccat tgatatgctt tatactagtc
5821 ccaatgataa cattgtggtg cagccccaga atggaagatg cacacttggt ggtgaactac
5881 aaggcacaac ccagctccaa ccaagcctta tctgctcctt tcgaggagtg accctcaatg
5941 agacttcccg gatgttggtt gatcaagagg aagaggaaga gggggaggtt cagcgcccac
6001 aagcccgcgc cttcaaccat gaataccatc ttcagctgca aaatttagat ggcactgact
6061 atgaccctgc aggggatctc cccgcaacct taggggcacc tgactttatt gggacagtgt
6121 atggagtggt tagtcagcgc accacccgtg atagtgcagc tagggcacat gaggccaaaa
6181 tcaccactag tgaccccagg tatgctccca agcttggatc agttgagttc gtaacagagt
6241 caacagatat tgtgctgaat gaccagacca agtttacccc tgttggtctt gcccataacc
6301 gggcagttga ctacaagcag tgggagctgc cacattatgc aggggagctc acagccaaca
6361 ccaatttagc ccctcctgtg gcgcctgttt accccggtga acaattgctt ttcttccgct
6421 caaaccttcc ccttgcaggt ggtacagccg caagtgttct tgattgtctt ttgccccaag
6481 agtggattca acatttttat caggaatcat tcgcccccca gtctgacatt gcactcctga
6541 ggtatgtgaa ccccgacaca ggtagagttc tctttgaagc aaaattgcac cgacagggtt
6601 acataactgt ggctggtgct ggcaccagtc ctgtggccgt gcctccaaac ggctatttta
6661 ggtttgagtc ttgggtatca cagttttata cactagcccc catgggatct ggaacggggc
6721 gcaggaggaa tcagtaatgg cggggcaaat tatagccggg attgctgctg atctgtttag
6781 ttctggactt ggctcactta ttaatgctgg tactaatgcc cttaatcaaa aggtggaata
6841 tgattttaat aagaaattac agtctgcttc ttttgctcat gatagggaaa tgctgcaggc
6901 gcaggtcgca gccacacggc aactgcagca agatatgatt aagatcaagg aagacacact
6961 catgctcgcc ggcttctctc catcagatgc ggcgcggggt tctgtaaacg ccccaatgac
7021 taaggtcctt gactggaacg gtactaggta ctgggctcca ggtgctatgc gcacctcatc
7081 ttattctggg cggttttcct ctcaagtgcc ccagaccacc ttttataagg aaccacccaa
7141 gataccatct agccaggcga agcctaatcc acggccggac cccaagccac ctgcgactca
7201 gcaaccgcag tcagcccctg ctccttccgg gagcagttcc ggttcaggat cagtctcgtc
7261 tcactctacc cagtcaacct ccctttccac tgtgcgttcc cccaattcaa cactgtcacg
7321 gaccgcgagt tgggttctct cacagaatct tgagcctttt atgccgggct cactgaacat
7381 cagcggtgtg actccaccat ctgatacttt ttctagtaga tcatcagttt cttctagatc
7441 ttcactttcg ggaacggtct caaccgtccc caaagagatt ttggactcct ggacacctgc
7501 atttaacaca cgcaggcaac cgctctttgc tcgcctccgc aggagggggg agtcacaagt
7561 ttagtgaaaa gttatctttg ttttcctttt ccttttctgt ttggtaactt tt
//