Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| AY823304 | GII.18 | |
|
|---|---|---|---|
| GII.P18 |
ORF1: 1..787
ORF2: 768..2441
ORF3: 2441..3268
LOCUS AY823304 3316 bp RNA linear VRL 26-JUL-2016
DEFINITION Norovirus swine/GII/OH-QW101/03/US RNA-dependent RNA polymerase
gene, partial cds; and capsid protein and VP2 small basic protein
genes, complete cds.
ACCESSION AY823304
VERSION AY823304.1
KEYWORDS .
SOURCE Norovirus swine/GII/OH-QW101/03/US
ORGANISM Norovirus swine/GII/OH-QW101/03/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3316)
AUTHORS Wang,Q.H., Han,M.G., Cheetham,S., Souza,M., Funk,J.A. and Saif,L.J.
TITLE Porcine noroviruses related to human noroviruses
JOURNAL Emerging Infect. Dis. 11 (12), 1874-1881 (2005)
PUBMED 16485473
REFERENCE 2 (bases 1 to 3316)
AUTHORS Wang,Q. and Saif,L.J.
TITLE Direct Submission
JOURNAL Submitted (11-NOV-2004) Veterinary Preventive Medicine, The Ohio
State University, 1680 Madison Ave., Wooster, OH 44691, USA
FEATURES Location/Qualifiers
source 1..3316
/organism="Norovirus swine/GII/OH-QW101/03/US"
/mol_type="genomic RNA"
/strain="OH-QW101/03/US"
/host="swine"
/db_xref="taxon:316619"
/country="USA"
/note="genogroup II"
CDS <1..787
/note="ORF1"
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="AAX32876.1"
/translation="QQRAILATAMEIMVRFSPGPELAQVVAEDLLSPSVLDVGDFKIS
VLEGLPSGVPCTSQWNSIAHWLLTLCAISESTGLSPDVVQAYSCFSFYGDDEIISTDI
EIKPEVLTEKLKSYGLIPTRPDKSEGPLVISKDLSGLTFLRRTITRDPSGWFGKLDKD
SILRQLYWTRGPNHDDPYETMTTHSQRATQLMALLGEASLHGAAFYSKVSKLVVTEIK
ESGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNDDGIE"
CDS 768..2441
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="AAX32877.1"
/translation="MMMASNDATAPTDGAAGLVPEVTNETMALEPVAGAALAAPVVGQ
HNVIDPWIRGNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVVLAGNAFAAGKIIFAAVPPSFPVDALSAPTITMCPHVIVDVRQLEPVLLPMPD
VRNNFFHYNQSSDPKLRLVAMLYTPLRANSPTDDVFTVSCRVLTRPSPDFEFTFLIPP
TVESKSKPFTIPQLTLSELSNSRFPAPIDMLYTSPNDNIVVQPQNGRCTLDGELQGTT
QLQPSLICSFRGVTLNETSRMLVDQEEEEEGEVQRPQARAFNHEYHLQLQNLDGTDYD
PAGDLPATLGAPDFIGTVYGVVSQRTTRDSAARAHEAKITTSDPRYAPKLGSVEFVTE
STDIVLNDQTKFTPVGLAHNRAVDYKQWELPHYAGELTANTNLAPPVAPVYPGEQLLF
FRSNLPLAGGTAASVLDCLLPQEWIQHFYQESFAPQSDIALLRYVNPDTGRVLFEAKL
HRQGYITVAGAGTSPVAVPPNGYFRFESWVSQFYTLAPMGSGTGRRRNQ"
CDS 2441..3268
/note="ORF3"
/codon_start=1
/product="VP2 small basic protein"
/protein_id="AAX32878.1"
/translation="MAGQIIAGIAADLFSSGLGSLINAGTNALNQKVEYDFNKKLQSA
SFAHDREMLQAQVAATRQLQQDMIKIKEDTLMLAGFSPSDAARGSVNAPMTKVLDWNG
TRYWAPGAMRTSSYSGRFSSQVPQTTFYKEPPKIPSSQAKPNPRPDPKPPATQQPQSA
PAPSGSSSGSGSVSSHSTQSTSLSTVRSPSSTLSRTASWVLSQNLEPFMPGSLNISGV
TPPSDTFSSRSSVSFRSSLPGTVSTVPKEILDSWTPAFNTRRQPLFAHLRRRGESQV"
3'UTR 3269..3316
ORIGIN
1 gcagcaaagg gccatccttg ccacggccat ggagatcatg gttcgcttct cacccgggcc
61 cgagcttgcc caggtggtgg ccgaggacct cctttcaccc agcgtccttg acgttggtga
121 cttcaagatc tcggtccttg aaggcctgcc ctcaggcgtc ccttgcacat cacagtggaa
181 ctccatagcg cattggcttc taacactctg tgcaatctct gagtcaacag ggctttcccc
241 tgatgtggtg caagcttact cgtgcttctc cttctatggt gatgatgaga tcataagcac
301 ggacatagag atcaaaccag aggttctcac agaaaagctc aagagctatg gtttaatacc
361 caccagacca gacaaaagcg aggggccact agtcattagc aaagacctgt ccgggttgac
421 tttcctgagg cggaccataa cccgtgaccc atcaggttgg tttggaaaat tggacaagga
481 ctccattttg aggcagcttt actggaccag ggggcccaac catgatgacc cctatgagac
541 catgaccaca cactcacaga gagccacaca gcttatggca ctacttgggg aagcctcatt
601 gcatggcgca gccttttaca gcaaggtcag taagctagtg gtgacagaaa tcaaagaaag
661 tggcctggag ttttacgtgc ccaggcaaga ggccatgttt aggtggatga ggttttctga
721 cctcagcacg tgggagggcg atcgcaatct ggctcccgag ggtgtgaatg atgatggcat
781 cgaatgatgc taccgctccg actgatggag ctgccggtct cgtcccagag gtcaccaatg
841 agaccatggc actggaaccc gtcgcagggg cggccttggc cgcgcctgtc gtagggcagc
901 ataacgttat tgacccctgg attagaggta attttgtgca agcccctaat ggagaattta
961 cagtttcccc ccgtaattcc cctggagagg ttttactaaa tttggaatta ggccctgaat
1021 taaaccctta tctggctcat cttgcccgta tgtacaacgg gtacgctggt ggaatggagg
1081 ttcaggtggt gctcgctggg aatgcgttcg cagcggggaa aatcatcttt gctgccgttc
1141 caccaagttt cccagttgat gctttgagtg cgcccacgat aacaatgtgc ccccacgtta
1201 tagtggatgt gagacaactg gagccagtat tgctccctat gccagatgtt aggaataatt
1261 tctttcatta taaccagagt tctgacccca agcttcgatt ggttgcaatg ctttatacgc
1321 ccttgagagc caatagccca actgatgatg tgtttactgt gtcttgtaga gttcttacga
1381 ggccatcccc tgattttgag ttcacctttt tgataccacc cacagttgag tccaaaagca
1441 agccttttac cattccccag cttaccttgt ctgagttgtc taattcaaga tttcctgcac
1501 ccattgatat gctttatact agtcccaatg ataacattgt ggtgcagccc cagaatggaa
1561 gatgcacact tgatggtgaa ctacaaggca caacccagct ccaaccaagc cttatctgct
1621 cctttcgagg agtgaccctc aatgagactt cccggatgtt ggttgatcaa gaggaagagg
1681 aagaggggga ggttcagcgc ccacaagccc gcgccttcaa ccatgaatac catcttcagc
1741 tgcaaaattt agatggcact gactatgacc ctgcagggga tctccccgca accttagggg
1801 cacctgactt tattgggaca gtgtatggag tggttagtca gcgcaccacc cgtgatagtg
1861 cagctagggc acatgaggcc aaaatcacca ctagtgaccc caggtatgct cccaagcttg
1921 gatcagttga gttcgtaaca gagtcaacag atattgtgct gaatgaccag accaagttta
1981 cccctgttgg tcttgcccat aaccgggcag ttgactacaa gcagtgggag ctgccgcatt
2041 atgcagggga gctcacagcc aacaccaatt tagcccctcc tgtggcgcct gtttaccccg
2101 gtgaacaatt gcttttcttc cgctcaaacc ttccccttgc aggtggtaca gccgcaagtg
2161 ttcttgattg tcttttgccc caagagtgga ttcaacattt ttatcaggaa tcattcgccc
2221 cccagtctga cattgcactc ctgaggtatg tgaaccccga cacaggtaga gtcctctttg
2281 aagcaaaatt gcaccgacag ggttacataa ctgtggctgg tgctggcacc agtcctgtgg
2341 ccgtgcctcc aaacggctat tttaggtttg agtcttgggt atcacagttt tacacactag
2401 cccccatggg atctggaacg gggcgcagga ggaatcagta atggcggggc aaattatagc
2461 tgggattgct gctgatctgt ttagttctgg acttggctca cttattaatg ctggtactaa
2521 tgcccttaat caaaaggtgg aatatgattt taataagaaa ttacagtctg cttcttttgc
2581 tcatgatagg gaaatgctgc aggcgcaggt cgcagccaca cggcaactgc agcaagatat
2641 gattaagatc aaggaagaca cactcatgct cgccggcttc tctccatcag atgcggcgcg
2701 gggttctgta aacgccccaa tgactaaggt ccttgactgg aacggtacta ggtactgggc
2761 tccaggtgct atgcgcacct catcttattc tgggcggttt tcctctcaag tgccccagac
2821 caccttttat aaggaaccac ccaagatacc atctagccag gcgaagccta atccacggcc
2881 ggaccccaag ccacctgcga ctcagcaacc gcagtcagcc cctgctcctt ccgggagcag
2941 ttccggttca ggatcagtct cgtctcactc tacccagtca acctcccttt ccactgtgcg
3001 ttcccccagt tcaacgctgt cacggaccgc gagttgggtt ctctcacaga atcttgagcc
3061 ttttatgccg ggctcactga acatcagcgg tgtgactcca ccatctgata ctttttctag
3121 tagatcatca gtttctttta gatcttcact tccgggaacg gtctcaaccg tccccaaaga
3181 gattttggac tcctggacac ctgcatttaa cacacgcagg caaccgcttt ttgctcacct
3241 ccgcaggagg ggggagtcac aagtttagtg aaaagttatc tttgtttccc ttttcctttt
3301 ctgtttggta actttt
//