Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| AY823303 | GII.11 | |
|
|---|---|---|---|
| GII.P11 |
ORF1: 1..784
ORF2: 768..2411
ORF3: 2411..3172
LOCUS AY823303 3229 bp RNA linear VRL 26-JUL-2016
DEFINITION Norovirus swine/GII/MI-QW48/02/US RNA-dependent RNA polymerase
gene, partial cds; and capsid protein and VP2 small basic protein
genes, complete cds.
ACCESSION AY823303
VERSION AY823303.1
KEYWORDS .
SOURCE Norovirus swine/GII/MI-QW48/02/US
ORGANISM Norovirus swine/GII/MI-QW48/02/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3229)
AUTHORS Wang,Q.H., Han,M.G., Cheetham,S., Souza,M., Funk,J.A. and Saif,L.J.
TITLE Porcine noroviruses related to human noroviruses
JOURNAL Emerging Infect. Dis. 11 (12), 1874-1881 (2005)
PUBMED 16485473
REFERENCE 2 (bases 1 to 3229)
AUTHORS Wang,Q. and Saif,L.J.
TITLE Direct Submission
JOURNAL Submitted (10-NOV-2004) Veterinary Preventive Medicine, The Ohio
State University, 1680 Madison Ave., Wooster, OH 44691, USA
FEATURES Location/Qualifiers
source 1..3229
/organism="Norovirus swine/GII/MI-QW48/02/US"
/mol_type="genomic RNA"
/strain="MI-QW48/02/US"
/host="swine"
/db_xref="taxon:316618"
/country="USA"
/note="genogroup II"
CDS <1..784
/note="ORF1"
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="AAX32873.1"
/translation="QQRGILAAALDIMVKFSAEPELAQVVAEDLLAPSVLDVGDFRIS
IVEGLPSGVPCTSQWNSFAHWLITLCAMSEVTGLSPDVIQAHSCFSFYGDDEIVSTDI
ILDPNKLTEKLKEYGLKPTRPDKTEGPLVIQKNLSGLTFLRRTIIRDPAGWFGKLDKD
SILRQLYWTRGPNHEDPMETMVPHSQRAIQLMALLGEASLHGSNFYSKVSRMVISEIK
EGGLEFYVPRHEAMFRWMRFSDLSTWEGDRNLAPSGVNEDGV"
CDS 768..2411
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="AAX32874.1"
/translation="MKMASNDAAPSTDGSAGLVPEVNNETMALEPVVGAPLAAPVAGQ
HNIIDPWIKMNFVQAPNGEFTVSPRNAPGEILLDLELGPDLNPYLSHLARMYNGYAGG
MEVQVVLAGNAFTAGKIIFAAVPPNFPAENLSAAQVTMCPHVIVDVRQLEPVMLPMPD
IRNKLFHYNQVDDPKLRLLAYLYTPLRANNAGDDVFTVSCRVLTRPTPDFEFMFLVPP
TVESKTKPFSLPSLTLDELSNSRFPAPIVQLYTNPHDNLVVQPQNGRCTIDGLLQGTT
QLVSCNVCSFRGTIGDGQPASHSEEEIMPMAFNIQREIMLENLDGSPYDPADDIPAVL
GSPDFQGIVFGVLSQRNADGQTRAHEAKVDTRAARFAPKLGFVVATVESTDFHANQPS
RFTPVGLGGDGNQDFNQWALPAYGGALTNNTNLAPPVMPVYPGEQILYFRSQLPSSGG
VVGGWLDCLLPQEWVQHFFQESATSQSDVALVRYINPTTGRVLFEAKLHKQGFLTVAA
SGSYPLVVPADGYFRFESWVNQFYTLAPMGNGSGRRRTR"
CDS 2411..3172
/note="ORF3"
/codon_start=1
/product="VP2 small basic protein"
/protein_id="AAX32875.1"
/translation="MAGQILLGLATDLIGGGIGSLISAGANAINQKVEYDFNKKLQSF
SFAHDKEMLQAQVDATKQLQQDLIQLKQDTLLSAGYLPADAARGSLGVPMTKALDWNG
TRYWAPNSMGTSSYSGRFSRPVSNLAFQSPQPSRQPPKAPASTSGSTSASSVSSSPTV
STGLPSSSTASSGSSRSSTATDRTREWVNSQNLGPYMDGALRTAFVTPPSSRSSSVGT
VSTVPDFVLDSWTPSFNTRRQPLFAHLRRRGESQA"
3'UTR 3172..3229
ORIGIN
1 ccagcagaga ggcatcctag cagccgcgtt agatatcatg gtgaagttct ctgctgagcc
61 tgaattagcc caggtggtgg cagaggatct ccttgccccc agtgtccttg atgttggtga
121 cttccgtatc tccatcgtag agggcctccc ctccggagtc ccgtgcacat cacagtggaa
181 ctccttcgcc cactggctta tcactctttg tgccatgtca gaagtgacag gtctctcacc
241 cgatgtgatc caggcccact cctgcttctc cttttatggt gatgatgaaa ttgtgagcac
301 ggacattatt ctggacccca ataagctcac agagaagtta aaggaatatg gcctaaaacc
361 aactaggccg gacaagactg aggggccctt agtgattcag aaaaacctgt caggactaac
421 tttcttgagg aggacgataa tccgtgaccc agctgggtgg tttggcaaac ttgacaaaga
481 ttccatcttg aggcagctct attggactag aggacccaac catgaagacc ctatggaaac
541 tatggtgcct cactcacaaa gggcaataca attgatggcc ttattggggg aggcctcact
601 gcacggttcc aacttctaca gcaaggtgag caggatggtg ataagtgaaa ttaaagaagg
661 tggtctggag ttttacgtgc ccagacatga agctatgttc cgctggatgc ggttttcaga
721 cctcagcacg tgggaaggcg atcgcaatct ggctcccagt ggtgtgaatg aagatggcgt
781 ctaatgacgc tgccccatct acggatggat ctgccggtct cgtaccagag gtcaataatg
841 agaccatggc cctggaacca gtagtgggcg cccctcttgc cgcccccgtt gctggtcaac
901 ataacataat agacccctgg attaaaatga attttgtgca ggcacctaat ggagagttta
961 ctgtttcccc tcgcaatgcc ccaggtgaaa ttttactaga tttggaactt ggccctgatc
1021 ttaatcctta cctttcacat ctggcccgta tgtataatgg atacgcgggc ggcatggagg
1081 tgcaagttgt actggctgga aatgctttta ctgctggaaa gatcattttt gctgctgtcc
1141 caccgaactt cccagcggag aatctcagtg cagcgcaggt caccatgtgt cctcatgtga
1201 tagttgatgt taggcaatta gaaccagtca tgctccccat gcctgatatt aggaataagt
1261 tatttcacta caatcaagtt gatgacccaa agcttagatt attggcctat ctttacacac
1321 ccctccgagc taacaatgct ggggatgatg tctttactgt ttcttgccgg gtgcttacta
1381 gaccaacccc agattttgag tttatgtttt tggttccccc cactgttgaa tccaagacta
1441 agcccttttc cttgcctagt ctcacccttg atgaactttc caattctaga tttcctgctc
1501 ccatagtgca gctttataca aatcctcatg ataatttggt tgtgcagccc cagaatggaa
1561 ggtgtaccat agatggcctt ttgcagggca ccacacagct tgtgtcctgt aatgtttgca
1621 gttttagagg gaccatcggt gatggccagc cagcaagcca cagtgaggaa gaaattatgc
1681 ccatggcttt taacatccag cgtgagatca tgctggagaa ccttgatggc tcgccctatg
1741 acccagctga tgacatcccc gcagtcctgg gctcccccga ctttcagggg atcgtgttcg
1801 gggttctcag tcagaggaac gctgatggac agaccagagc acatgaagct aaggtggaca
1861 ctagggcagc ccgattcgcc cccaaacttg gctttgtcgt agccaccgtg gagagcacag
1921 acttccacgc taatcaaccc agtaggttca ctcctgttgg gctaggtgga gatggaaacc
1981 aggattttaa ccagtgggca ttgccggcct acggtggtgc actaacaaac aacaccaacc
2041 ttgccccacc tgtgatgccc gtctacccag gggagcagat actctacttc cgctctcagt
2101 tgccaagctc tggcggtgtg gttggtgggt ggctggactg tctactcccc caggaatggg
2161 tccaacattt cttccaagag tcagccacct cccagagtga tgtggccctg gttagatata
2221 taaatcccac cacaggtaga gtgctctttg aagcgaaact gcacaaacag ggctttctca
2281 ccgtggccgc ctcgggttcc taccccttgg ttgttcccgc tgatggttat tttagatttg
2341 agtcttgggt gaatcaattt tacactttgg cccccatggg aaatggtagc gggcgcagga
2401 gaactcgtta atggctggac agattttatt gggcttggct acggatctta ttgggggtgg
2461 gataggctct ttgattagtg ctggtgccaa tgcaattaat caaaaagttg agtatgattt
2521 taataaaaag ttacaatcat tttcctttgc tcatgataag gagatgttac aagcacaggt
2581 ggatgcaacc aaacagttgc agcaagattt gattcagctg aagcaggaca ctctcctttc
2641 tgctggttac ctcccagccg atgcggccag aggctctctt ggtgtaccta tgaccaaggc
2701 cttggactgg aatggtacga gatattgggc tcccaactct atgggcactt ctagctactc
2761 agggcgtttt tcccgccctg tttcaaatct ggccttccag agcccgcaac cttctcgtca
2821 accacccaag gctccagctt ccacctcagg gtccacgagc gcctcttcag tttcatcatc
2881 tccaactgtg tcaacggggt tgcccagttc ctccacggcc tcgtcggggt catccaggtc
2941 ttcaaccgcc acagacagga ccagggagtg ggtgaactca cagaatctgg gcccctatat
3001 ggatggtgcc ctgcggacgg cgtttgtcac gcccccgtcc agcaggagct ccagtgtcgg
3061 cacggtctcg accgtaccag actttgtttt ggactcatgg accccttcct tcaacacgag
3121 gaggcaacca ctctttgcac acctgcgtag gcggggagag tcacaagcct aatggcttgg
3181 tgaaagatag ggcttctttg ttttctttct tctttgttcc ctaatcttc
//