Typing tool
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Typing tool
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Complete norovirus genomes
| AY741811 | GII.4 US95 | |
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| GII.P4 US95 |
ORF1: 4..5103
ORF2: 5084..6703
ORF3: 6703..7509
LOCUS AY741811 7555 bp ss-RNA linear VRL 30-JUN-2006
DEFINITION Norovirus Hu/NLV/Dresden174/pUS-NorII/1997/GE, complete genome.
ACCESSION AY741811
VERSION AY741811.1
KEYWORDS .
SOURCE Norovirus Hu/NLV/Dresden174/pUS-NorII/1997/GE
ORGANISM Norovirus Hu/NLV/Dresden174/pUS-NorII/1997/GE
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7555)
AUTHORS Rohayem,J., Robel,I., Jager,K., Scheffler,U. and Rudolph,W.
TITLE Protein-Primed and De Novo Initiation of RNA Synthesis by Norovirus
3Dpol
JOURNAL J. Virol. 80 (14), 7060-7069 (2006)
PUBMED 16809311
REFERENCE 2 (bases 1 to 7555)
AUTHORS Scheffler,U. and Rohayem,J.
TITLE Generation and characterization of a norovirus full-lenth clone
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 7555)
AUTHORS Scheffler,U. and Rohayem,J.
TITLE Direct Submission
JOURNAL Submitted (04-SEP-2004) The Calicilab, Institute of Virology,
Fetschestrasse 74, Dresden, Saxony 01307, Germany
FEATURES Location/Qualifiers
source 1..7555
/organism="Norovirus Hu/NLV/Dresden174/pUS-NorII/1997/GE"
/mol_type="genomic RNA"
/isolate="Hu/NLV/Dresden174/pUS-NorII/1997/GE"
/db_xref="taxon:296145"
/country="Germany"
CDS 4..5103
/note="ORF1"
/codon_start=1
/product="polyprotein"
/protein_id="AAU95775.1"
/translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEIVVSYSVKDGVSGLPELSTVRQPE
EANTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLILGVHKPPAATS
LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGKQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM
PDLKQALKNISIKKCQIVYSGCTYTLESDGKGNAKVDRVQSASVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQDLWSKPQVEDTGEAINKDGC
PKPKDDEEFVISSDDIKTEGKKGRNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRENDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFTQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRRARAFGGLMDELKTHCVTLPIRVGMNMNEDGSIIFERHSRHKYHYDADYSRWD
STQQRAVLAAALVIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
KYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTGGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5084..6703
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="AAU95776.1"
/translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLKANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSAVNICTFRGDVTHIAGSHDYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTREDGSTRAHKATVSTGSVHFTPKLGSVQYTTDTNNDFQTGQNTKFTPVGVIQDG
NNHQNEPQQWVLPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC
LLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGPHDLVI
PPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
CDS 6703..7509
/note="ORF3"
/codon_start=1
/product="putative structural protein"
/protein_id="AAU95777.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLHKASFQHDKEMLQAQIEATNKLQQGMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNLRATVPARGSSSRLS
STPTATSVYSNQTVSTRLGSSAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGALNT
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 tgaatgaaga tggcgtctaa cgacgcttcc gctgccgctg ttgccaacag caacaacgac
61 accgcaaaat cttcaagtga cggagtgctt tctagcatgg ctgtcacttt taaacgagcc
121 ctcggggcgc ggcctaaaca gccccccccg agggaaatac cacaaagacc cccacgacca
181 cccaccccag aactggtcaa aaagatcccc cctcccccgc ccaacgggga ggatgaaata
241 gtggtttctt atagtgtcaa agatggcgtt tccggtctgc ctgagctttc caccgtcagg
301 caaccggaag aagccaatac ggctttcagt gtccccccac tcaaccagag ggagaatagg
361 gatgctaagg agccactgac tggaacaatt ctggaaatgt gggatggaga gatctaccat
421 tacggcctat atgtggagcg aggtcttata cttggtgtgc acaaaccacc agctgccact
481 agcctcgcca aggtcgagct aacaccactc tccttgttct ggagacctgt gtatactccc
541 cagtatctca tctctccaga cactctcaag aaattacacg gagaatcgtt tccctacaca
601 gcctttgaca acaattgcta tgccttctgt tgctgggtct tggacctaaa cgactcgtgg
661 ctgagtagga gaatgatcca gagaacaact ggtttcttca gaccctacca agattggaat
721 aggaaacccc tccccactat ggatgattcc aaattaaaga aggtagctaa tatattcctg
781 tgtgctctgt cttcactatt caccaggccc ataaaagaca taatagggaa gctaaggcct
841 cttaacatcc tcaacatctt ggcctcatgt gattggactt tcgcaggcat agtggaatcc
901 ttgatactct tggcagagct ctttggagtt ttctggacac ccccagatgt gtctgcgatg
961 attgccccct tactcggtga ttacgagtta caaggacctg aggaccttgc agtggaactc
1021 gttcctgtag tgatgggggg aattggtctg gtgctaggat ttaccaaaga gaagattgga
1081 aaaatgttgt catctgctgc atccacctta agagcttgta aagatcttgg tgcgtacggg
1141 ctggaaatcc taaagttagt catgaagtgg ttcttcccaa agaaagagga agcaaatgaa
1201 cttgctatgg tgagatccat cgaggatgca gtgctggacc tcgaggcaat tgaaaacaac
1261 catatgacca ccttgctcaa agacaaagac agtctggcaa cctacatgag aacccttgac
1321 cttgaggagg agaaagccag gaagctctca accaagtccg cttcacctga catcgtgggc
1381 acaatcaacg cccttctggc gagaatcgct gctgcacgtt ccctggtgca tcgagcgaag
1441 gaggagcttt ccagcagacc aagacctgtt gtcttgatga tatcaggcag accaggaata
1501 gggaagaccc accttgctag ggaagtggcc aagagaatcg cagcctccct cacaggaaaa
1561 cagcgtgtag gcctcgtccc acgcaatggc gtcgatcact gggatgcata caagggggag
1621 agggtcgtcc tatgggacga ctatgggatg agcaatccca tccacgatgc cctcaggttg
1681 caagaactcg ctgacacttg ccccctcact ctaaactgtg acaggattga gaacaaagga
1741 aaggtctttg acagtgatgt cataattatc accactaatc tggccaaccc agcaccactg
1801 gactatgtca actttgaagc atgctcgagg cgcatcgatt tcctcgtgta tgcagaagcc
1861 cctgaagtcg aaaaggcgaa acgtgacttc ccaggccaac ctgacatgtg gaagaacgct
1921 ttcagttctg atttctcaca cataaaacta acactggctc cacagggtgg cttcgataag
1981 aacgggaaca ccccacacgg gaagggcgtc atgaagactc tcaccactgg ctcccttatt
2041 gcccgggcat cagggctact ccatgagagg ctagatgagt ttgaactaca gggcccagct
2101 ctcaccacct tcaactttga tcgcaacaaa gtgcttgcct ttaggcagct tgctgctgaa
2161 aacaaatacg ggttgatgga cacaatgaaa gttggaaggc agctcaagga tgtcagaacc
2221 atgccagatc ttaaacaagc actcaagaat atctcaatca agaagtgcca gatagtgtac
2281 agtggttgca cctatacact tgagtctgat ggcaagggca atgcgaaagt tgatagagtt
2341 cagagcgcct ccgtgcagac caacaacgag ctggccggcg ccctacacca tctaaggtgc
2401 gccagaatca ggtactatgt caagtgtgtc caggaggccc tgtattccat catccaaatt
2461 gctggagctg catttgtcac cacgcgcatc gccaagcgca tgaacataca agacctctgg
2521 tccaagccac aagtggaaga cacaggggag gctatcaaca aggacgggtg cccaaaaccc
2581 aaagatgatg aggagtttgt catttcatcc gacgatatca aaactgaggg caagaaaggg
2641 aggaacaaga ctggccgcgg caagaagcac acagccttct caagcaaagg tctcagtgat
2701 gaagagtacg acgagtacaa gaggattaga gaagaaagaa atggcaagta ctccatagaa
2761 gagtaccttc aggacaggga caaatactat gaggaggtgg ccattgccag ggcgaccgag
2821 gaagacttct gtgaagagga ggaggccaag attcggcaaa ggattttcag gccaacaagg
2881 aaacaacgca aggaggaaag ggcctctctc ggtttagtca caggttctga aatcagaaaa
2941 aggaacccag atgacttcaa gcccaagggg aaactgtggg ctgatgatga cagaagtgtg
3001 gactacaatg agaaactcag ttttgaggcc ccaccaagca tctggtcgag gatagtcaac
3061 tttggttcag gttggggctt ttgggtctcc cccagtctgt tcataacatc aacccatgtc
3121 ataccccagg gcgcaaagga gttctttgga gtctccatca agcaaatcca gatacacaaa
3181 tcaggcgaat tctgtcgctt gagattccca aaaccaatca ggactgatgt gacgggcatg
3241 atcttagaag aaggtgcgcc cgaaggcacc gtggccacac tactcatcaa gaggcctact
3301 ggagaactta tgcccctagc agctagaatg gggacccatg caaccatgaa aattcaaggg
3361 cgcactgttg gaggtcagat gggcatgctt ctgacaggat ccaacgccaa aagcatggac
3421 ctaggcacca caccaggtga ctgcggctgc ccctacatct acaagaggga aaatgactat
3481 gtggttattg gagtccacac ggctgccgct cgtgggggaa acactgtcat atgtgccact
3541 caggggagtg agggggaggc tacacttgaa ggtggtgaca gtaagggaac atactgtggt
3601 gcaccaatcc taggcccggg gagtgcccca aaactcagca ccaagaccaa attctggaga
3661 tcgtccacaa caccactccc acctggcacc tatgaaccag cctatcttgg tggtaaggac
3721 cccagagtca agggtggccc ttcattgcaa caagttatga gggatcagtt gaaaccattt
3781 acagagccca ggggcaaacc accaaagcca agtgtgttgg aagctgccaa gaaaaccatc
3841 atcaatgtcc ttgaacaaac aattgatcca cctgagaaat ggtcattcac gcaagcttgc
3901 gcgtcccttg acaagactac ttccagtggc catccgcacc acatgcggaa aaacgactgc
3961 tggaacgggg agtccttcac aggcaagctg gcagaccagg cttccaaggc caacctgatg
4021 ttcgaagagg ggaagaacat gaccccagtc tacacaggtg cgcttaagga tgagttagtt
4081 aaaactgaca aaatttatgg taagatcaag aagaggcttc tctggggttc ggacttagcg
4141 accatgatcc ggcgcgctcg agcattcgga ggcttaatgg atgaactcaa aacacactgt
4201 gttacacttc ctatcagagt tggtatgaat atgaatgagg acggttcgat catcttcgag
4261 aggcattcca ggcacaaata tcattatgat gctgattact ctcggtggga ttcaacacaa
4321 caaagggccg tgttggcagc agccttagta atcatggtta aattctcctc agaaccacat
4381 ttggctcagg tagtcgcaga agaccttctt tctcctagcg tggtggatgt gggcgacttc
4441 aagatatcaa tcaatgaggg tctcccctct ggggtgccct gcacctccca atggaactcc
4501 atcgcccact ggcttctcac tctctgtgcg ctctctgaag ttacaaactt atcccctgac
4561 atcatacagg ctaattccct cttctccttt tatggtgatg atgaaattgt tagtacagat
4621 ataaagttgg acccagagaa attgacagca aagctcaaga aatacgggtt gaaaccaacc
4681 cgccctgaca aaactgaagg gccccttgtt atttctgaag acttaaatgg tctgaccttc
4741 ctgcggagaa ctgtgacccg cgacccagct ggttggtttg gaaaattgga gcagagttca
4801 atactcagac aaatgtactg gactgggggc cccaaccatg aagacccatc tgaaacaatg
4861 attccacatt cccaaagacc catacaattg atgtccctac tgggagaggc cgcgctccac
4921 ggcccagcat tctacagcaa aataagcaag ttagttattg cagagctaaa agaaggtggc
4981 atggattttt acgtgcccag acaagagcca atgttcagat ggatgagatt ctcagatctg
5041 agcacgtggg agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgaa
5101 tgacgccaac ccatctgatg ggtccacagc caacctcgtc ccagaggtca acaatgaggt
5161 tatggctttg gagcccgttg ttggtgccgc tattgcggca cctgtagcgg gccaacaaaa
5221 tgtaattgac ccctggatta gaaataattt tgtacaagcc cctggtggag agtttacagt
5281 atcccctaga aacgctccgg gtgagatact atggagcgcg cccttgggcc ctgatttgaa
5341 cccttacctt tctcatttgg ccagaatgta caatggttat gcaggtggct ttgaagtgca
5401 ggtaatcctc gcggggaacg cgttcaccgc cgggaaagtc atatttgcag cagtcccacc
5461 aaattttcca actgaaggct tgagccccag ccaggttact atgttccccc atataatagt
5521 agatgttagg caactggaac ctgtgttgat ccccttacct gatgtcagga acaatttcta
5581 tcattacaat caatcaaatg attccaccat taaattgata gcaatgctgt atacaccact
5641 taaggctaat aatgctgggg atgatgtctt cacagtctct tgtcgagtcc tcacaaggcc
5701 atcccccgat tttgatttta tatttttggt gccacccaca gttgaatcaa gaactaaacc
5761 gttcaccgtc ccaatcctaa ctgttgagga aatgtccaat tcaaggttcc ccatcccttt
5821 ggaaaagttg tacacgggtc ccagcagtgc ttttgtcgtc caaccacaaa atggcaggtg
5881 cacgactgat ggtgtgctct taggcactac ccagctgtct gctgtcaaca tctgcacctt
5941 cagaggggat gtcacccaca ttgcaggcag tcatgattat acaatgaatt tggcttctca
6001 aaattggaac aattatgacc caacagaaga aatcccagcc cctctgggaa ctccagattt
6061 cgtgggaaag atccaaggca tgctcaccca aaccacaaga gaggatggct cgacccgcgc
6121 ccacaaagct acagtgagca ctgggagtgt ccactttact ccaaagctgg gcagtgtcca
6181 atacaccact gacacaaaca atgattttca aactggccaa aacacgaaat tcaccccagt
6241 cggcgtcatc caggacggta ataaccatca aaatgaaccc caacaatggg tgctcccaaa
6301 ttactcaggt agaactggtc ataatgtaca cctagctcct gccgttgccc ccacttttcc
6361 gggtgagcaa cttcttttct ttaggtccac tatgcccggg tgtagcgggt atcctaacat
6421 gaatctggat tgcctactcc cccaagaatg ggtgcagcac ttctaccaag aagcagctcc
6481 agcacaatct gatgtggctc tgctgagatt tgtgaatcca gatacaggta gggttctgtt
6541 tgagtgcaag cttcataaat caggctatgt cacagtggct cacactggcc cgcatgattt
6601 ggttatcccc cccaatggtt acttcagatt tgattcctgg gtcaaccagt tctacacact
6661 cgcccccatg ggaaatggag cggggcgtag acgtgcatta taatggctgg agctttcttt
6721 gctggattgg catctgatgt ccttggctct ggacttggtt ccctaatcaa tgctggggct
6781 ggggccatca accaaaaagt tgaatttgaa aataacagaa aattgcaaca agcttccttc
6841 caatttagta gcaacctaca caaggcttct ttccaacatg ataaagagat gctccaagca
6901 caaattgagg ccactaacaa attgcaacag ggtatgatga aagttaaaca ggcgatgctc
6961 ctagagggtg gattctctga aacagatgca gcccgtgggg caatcaacgc ccccatgaca
7021 aaggctctgg actggagcgg aacaaggtac tgggctcctg atgccaggac cacaacatac
7081 aatgcaggcc gcttttccac ccctcaacct tcgggggcat tgccaggaag aactaatctt
7141 agggctactg tccccgctcg gggttcctct agtagacttt ctagtactcc cactgctact
7201 tctgtgtatt caaatcaaac tgtttcaacg agacttggtt cttcagctgg ttctggtacc
7261 agtgtctcga gtctcccgtc aactgcaagg actaggagct gggttgagga tcaaaacaga
7321 aatttgtcac cttttatgag gggggctctc aacacatcat ttgtcacccc tccatctagt
7381 agatcctcta gccaaggcac agtctcaacc gtgcctaaag aaattttgga ctcctggact
7441 ggcgctttca acacgcgcag gcagcctctc ttcgctcaca ttcgtaagcg aggggagtca
7501 cgggtgtaat gtgaaaagac aaaattgatc atctttccat tctttagtgt ctttt
//