Typing tool
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Typing tool
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Complete norovirus genomes
| AY652979 | GII.3 | |
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| GII.P21 |
ORF1: 1..784
ORF2: 768..2414
ORF3: 2414..3178
LOCUS AY652979 3230 bp mRNA linear VRL 26-JUL-2016
DEFINITION Norovirus NLV/Paris Island/2003/USA RNA-dependent RNA polymerase
mRNA, partial cds; and capsid protein and minor structural protein
mRNAs, complete cds.
ACCESSION AY652979
VERSION AY652979.1
KEYWORDS .
SOURCE Norovirus NLV/Paris Island/2003/USA
ORGANISM Norovirus NLV/Paris Island/2003/USA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3230)
AUTHORS Huang,P., Farkas,T., Zhong,W., Tan,M., Bai,Y., Thornton,S. and
Jiang,X.
TITLE Norovirus/histo-blood group antigen interaction: Elucidation of
structure/function and genetic relationship among promiscuous
binding specifities
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3230)
AUTHORS Zhong,W., Farkas,T., Thornton,S. and Jiang,X.
TITLE Direct Submission
JOURNAL Submitted (14-JUN-2004) Infectious Diseases, CCHMC, 3333 Burnet
Avenue, Cincinnati, OH 45229, USA
FEATURES Location/Qualifiers
source 1..3230
/organism="Norovirus NLV/Paris Island/2003/USA"
/mol_type="mRNA"
/strain="NLV/Paris Island/2003/USA"
/db_xref="taxon:284468"
/country="USA"
CDS <1..784
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="AAT70112.1"
/translation="QQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVMDVGDFKIS
INEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDI
KLDPEKLTTKLKEYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQS
SILRQMYWTRGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPSFYSKISELVISELK
EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGV"
CDS 768..2414
/note="capsid"
/codon_start=1
/product="capsid protein"
/protein_id="AAT70110.1"
/translation="MKMASKDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDNEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
CDS 2414..3178
/codon_start=1
/product="minor structural protein"
/protein_id="AAT70111.1"
/translation="MAGAFIAGLAGDILTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPNATSTTSMSGGFTNQAVHRTTPNFKTNQAPKSTPSSGSSMRSNSTQITSLSS
HSSGSSRSSGSTVVSSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 acaacaaaga gcagtgctgg ctgcagcttt ggaaataatg gtcaaattct catcagaacc
61 tcatctggcc caagtagttg cagaagacct cttgtccccc agtgtgatgg atgtgggcga
121 tttcaagata tcaatcaacg aggggttgcc ctctggtgta ccttgcacct cacaatggaa
181 ctccattgcc cactggctcc tgacactatg tgcgctgtct gaagtcacag atctgtcccc
241 tgatatcatc caggcaaact ccctattctc cttttatggt gatgatgaaa tagtgagcac
301 agacatcaaa ttggacccag aaaaattgac aacaaaattg aaggaatacg ggctaaaacc
361 aacccgtcct gataaaacag aaggaccctt aattatctct gaagatttgg atggcctgac
421 cttcttacgg agaacggtga cccgtgatcc ggctgggtgg tttggcaaac tggaccaaag
481 ttcaatactc aggcagatgt actggaccag gggaccaaac catgaggacc cctttgaaac
541 aatgatacca cactcccaaa gacccataca actgatgtca ctactgggtg aagctgcatt
601 acatggccca tcattctaca gtaaaattag cgaattggtc atctcagaat tgaaagaagg
661 tggaatggac ttttacgtgc ccagacaaga accaatgttt aggtggatga gattctcaga
721 tttgagcacg tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt
781 ctaaggacgc cactccatct aatgatggtg ccgccggcct cgtcccagag atcaacaatg
841 aggcaatggc gctagatcca gtggcgggtg cagcgatagc agcacccctc actggtcagc
901 aaaatataat tgatccctgg attatgaata attttgtgca agcacctggt ggtgagttta
961 cagtatcccc taggaattcc cctggtgaag tgcttcttaa tttggaattg ggcccagaaa
1021 taaatcccta tttggcccat cttgccagaa tgtataatgg ttatgcaggt ggatttgaag
1081 tgcaggtagt cctagctgga aatgcgttta cagcaggaaa gataatcttt gcagctatac
1141 cccccaattt tccaattgat aatctaagcg cagcacagat cacaatgtgc ccacatgtga
1201 ttgtggacgt cagacagttg gaaccagtca acctcccgat gcctgacgtt cgcaacaact
1261 tcttccatta caatcaaggg tctgattcga gattgcgctt aattgcaatg ctgtatacac
1321 ctcttagggc aaataattct ggtgatgatg tttttactgt gtcttgtaga gtgctgacta
1381 ggcctagccc tgacttctca tttaatttcc ttgtgccacc tactgtggag tcaaagacaa
1441 aacccttcac cctccctatt ctgactatct ccgaaatgtc caattctagg tttccagtgc
1501 cgattgactc tctgcacacc agcccaactg agaatattgt tgtccagtgc caaaatgggc
1561 gcgtcactct tgatggtgag ttgatgggca ccacccaact cttacctagt caaatctgtg
1621 ctttcagggg cgtgctcacc agatcaacaa gcagggccag tgatcaggcc gacacagcaa
1681 cccctaggtt gtttaattat tattggcaca tacaattgga taatctaaat gggactccct
1741 atgatcctgc agaagatata ccaggccccc tagggacgcc agatttccgg ggcaaagtct
1801 ttggcgtggc cagccagaga aaccccgaca gcacaactag agcacatgaa gcaaaggtgg
1861 acacaacagc tggtcgtttc accccaaaac taggctcatt agagatatcc actgaatctg
1921 gtgactttga ccaaaaccaa ccaacaagat tcaccccagt tggcattggg gttgacaatg
1981 aagcagactt tcaacaatgg tctttacctg actattctgg tcagttcacc cacaacatga
2041 acttagcccc agctgttgct cccaacttcc ctggtgagca gctccttttc ttccgctcac
2101 agttaccatc ctctggtggg cgatccaacg ggattctaga ctgcctggtc ccccaagagt
2161 gggttcagca cttctaccaa gaatcggccc cctctcaaac tcaagtggcc ctggttaggt
2221 atgtcaaccc tgacactggt agagtattat ttgaggccaa gctgcacaaa ctaggtttca
2281 tgactatagc taagaatggt gactctccaa taactgtccc tccaaatgga tactttaggt
2341 ttgaatcttg ggtgaaccca ttttatacac ttgcccccat gggaactggg aatgggcgta
2401 gaaggattca ataatggctg gagcttttat agcaggatta gctggtgata tacttacaaa
2461 tactgtagga tctttagtta atgcaggggc taatgccatt aatcaaaaag ttgattttga
2521 aaacaataaa tatttacaaa atgcttcctt taatcatgac aaggaaatgt taaatgcaca
2581 aattgaggca acaaagaggt tacaggctga catgattgct atcaaacaag gggttttgac
2641 cgctggcggc ttctccccta ctgatgcagc ccgcggggca attaatgccc ccatgacaaa
2701 agtcctagat tggaatggga cgaggtactg ggcaccaaat gccacctcca caacctcgat
2761 gtcgggtggc ttcacaaatc aggctgtgca cagaaccacg ccaaatttta aaacgaacca
2821 ggctcccaaa tccacaccca gcagtgggtc ttcaatgagg tcaaactcaa cccaaatcac
2881 tagcctgagc tcacactcgt ccgggtcgtc tcgatccagc gggtctacag ttgttagctc
2941 attaccatcc tctaacagga ctagggactg ggtcaaccag caaaatttta atttggaacc
3001 acacatgcct gggtctctta ggacagcctt tgttactcca ccatctagta cagcctccag
3061 ttcaggtacg gtctcgaccg tgcccaaaaa tgttttggac tcctggacat ctgcgttcaa
3121 tacgcgcaga cagccgctat tcgcacacct tcgcagaagg ggggagtcaa atgtttagtg
3181 aaaagattat tttaaatttg atttaaattg gatttgattt ggaatctttt
//