Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| AY588019 | GII.4 Farmington Hills | |
|
|---|---|---|---|
| GII.P4 Farmington Hills |
ORF1: 1..801
ORF2: 782..2404
ORF3: 2404..3210
LOCUS AY588019 3255 bp RNA linear VRL 26-JUL-2016
DEFINITION Norovirus Hu/NLV/Oxford/B5S19/2002/UK non-structural polyprotein
gene, partial cds; and capsid protein and ORF3 genes, complete cds.
ACCESSION AY588019
VERSION AY588019.1
KEYWORDS .
SOURCE Norovirus Hu/NLV/Oxford/B5S19/2002/UK
ORGANISM Norovirus Hu/NLV/Oxford/B5S19/2002/UK
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3255)
AUTHORS Dingle,K.E.
CONSRTM Norovirus Infection Control in Oxfordshire Communities Hospitals
TITLE Mutation in a Lordsdale norovirus epidemic strain as a potential
indicator of transmission routes
JOURNAL J. Clin. Microbiol. 42 (9), 3950-3957 (2004)
PUBMED 15364974
REFERENCE 2 (bases 1 to 3255)
AUTHORS Dingle,K.E.
TITLE Direct Submission
JOURNAL Submitted (01-APR-2004) Nuffield Department of Clinical Sciences,
Oxford University, Microbiology Level 6, John Radcliffe Hospital,
Oxford, Oxfordshire OX3 0SA, UK
FEATURES Location/Qualifiers
source 1..3255
/organism="Norovirus Hu/NLV/Oxford/B5S19/2002/UK"
/mol_type="genomic RNA"
/isolate="Hu/NLV/Oxford/B5S19/2002/UK"
/db_xref="taxon:272606"
CDS <1..801
/note="ORF1"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="AAT00341.1"
/translation="RWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVG
DFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEI
VSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFG
KLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLV
IAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 782..2404
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="AAT00342.1"
/translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGTHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGRIQGML
TQTTRGDGSTRGHKATVSTGDVHFTPKLGSVQFNTDTNNDFETGQNTKFTPVGVVQDG
NGAHQNEPQQWVLPSYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2404..3210
/codon_start=1
/product="ORF3"
/protein_id="AAT00343.1"
/translation="MAGAFFAGLASDVLGSGLGSLISAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMEVKRAMLLEGGFSETDASRGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNPRATVPVRGFSSVPS
NTSTATSVYSNQTVSTRLGSTAGSGTSVSSLPSTARTRSWIEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 cggtgggatt caacacaaca gagagctgtg ctggcagcag ctctagaaat catggttaaa
61 ttctcctcag aaccacattt ggctcaggta gtcgcagaag accttctttc tcctagcgtg
121 gtggatgtgg gtgacttcac aatatcaatc aacgagggtc tcccctctgg ggtaccctgt
181 acctcccaat ggaactccat cgcccactgg cttctcactc tctgtgcgct ctctgaagtt
241 acaaatctgt cccctgacat catacaggct aattccctct tctcctttta tggtgatgat
301 gaaatcgtta gcacagacat aaaattggac ccagagaagt tgacagcaaa gctcagggaa
361 tatgggctga aaccaactcg ccctgacaaa actgaagggc cccttgttat ctctgaagac
421 ttaaatggtc tgactttcct gcggagaact gtgacccgcg acccagctgg ttggtttgga
481 aaactggagc agagttcaat actcaggcaa atgtactgga ctaggggccc caaccatgaa
541 gacccatctg aaacaatgat tccacactcc caaagaccca tacagttgat gtccttactg
601 ggagaggccg cactccacgg cccagcattc tacagcaaaa ttagcaagtt agtcattgca
661 gagctaaaag aaggtggcat ggatttttac gtgcccaggc aagagccaat gttcagatgg
721 atgagattct cagatctgag cacgtgggag ggcgatcgca atctggctcc cagttttgtg
781 aatgaagatg gcgtcgaatg acgccaaccc atctgatggg tccacagcca acctcgtccc
841 agaggtcaac aatgaggtta tggctttgga gcccgttgtt ggtgccgcta ttgcggcacc
901 tgtagcgggc caacaaaatg taattgaccc ctggattaga aataattttg tacaagcccc
961 tggtggagag tttacagtgt cccctagaaa cgctccaggt gaaatactat ggagcgcgcc
1021 cttgggccct gatctgaacc cctacctttc tcatttggcc agaatgtaca atggctatgc
1081 aggtggcttt gaagtgcagg taatccttgc ggggaatgcg ttcaccgccg ggaaaatcat
1141 atttgcagca gtcccaccaa atttcccaac tgaaggctta agccccagcc aggtcactat
1201 gttcccccat ataatagtag atgttaggca actggaacct gtgttgatcc ccttacctga
1261 tgttaggaac aatttctatc actacaacca atcaaatgac cccaccatta aattgatagc
1321 aatgctgtac acaccactta gggctaataa tgctggggaa gatgtcttca cagtctcttg
1381 tcgagtcctc acgaggccat cccccgattt tgatttcata tttttggtgc cacccacagt
1441 tgagtcaaga actaaaccat tcaccgtccc aattttaact gttgaggaaa tgaccaattc
1501 aagattccct attcctttgg aaaagttgtt cacgggtcct agtggtgcct ttgttgttca
1561 accacaaaat ggcaggtgta cgactgatgg cgtgctctta ggcactaccc aactgtctcc
1621 tgtcaacatc tgcaccttca gaggggatgt cacccacatt gcaggtactc ataattacac
1681 aatgaatttg gcttctcaaa attggaacaa ttatgaccca acagaagaaa tcccagcccc
1741 tctggggacc ccagatttcg tgggaaggat ccaaggcatg ctcacccaaa ctacaagggg
1801 agatggctct acccgcggcc acaaagctac agtgagcact ggggatgtcc acttcactcc
1861 aaagctgggc agtgttcagt tcaacactga tacaaacaat gattttgaaa ctggccaaaa
1921 cacgaaattc accccagtcg gtgttgtcca ggatggtaat ggtgcccacc aaaatgaacc
1981 tcaacaatgg gtgctcccaa gctactcagg tagaactggc cataatgtac acctagcccc
2041 cgccgtagcc cccacttttc cgggtgagca acttcttttc ttcaggtcca ctatgcccgg
2101 atgcagcggg taccccaaca tgaatttgga ttgtctactc ccccaggaat gggtgcagca
2161 cttctatcaa gaggcagctc cagcacaatc tgatgtggct ctgctaagat ttgtgaatcc
2221 agacacaggt agggttctat ttgagtgcaa gcttcataaa tcaggctatg tcacagtggc
2281 tcacactggc cagcatgatt tggttatccc ccccaatggc tattttaggt ttgattcctg
2341 ggtcaaccaa ttctacacac ttgcccccat gggaaatggg acggggcgta gacgtgcatt
2401 ataatggctg gagctttctt cgccgggctg gcatctgatg tccttggctc tggacttggt
2461 tccctaatca gtgctggggc tggggccatc aaccaaaaag ttgaatttga aaataacaga
2521 aaattgcaac aagcttcctt ccaatttagt agcaatctac aacaggcttc ctttcaacat
2581 gataaagaga tgctccaagc acaaattgag gctactaaaa agttgcaaca gggtatgatg
2641 gaagttaaac gggcaatgct cctagagggt ggattctctg aaacagatgc atcccgtggg
2701 gcaatcaacg cccccatgac aaaggctttg gattggagcg gaacaaggta ctgggctcct
2761 gatgctagga ctacaacata caatgcaggc cgcttttcca cccctcagcc ctcgggggca
2821 ctgccaggaa ggaccaatcc cagggctact gtccccgttc ggggcttctc cagtgtacct
2881 tctaatactt ctactgctac ttctgtgtat tcaaatcaaa ctgtttcaac gagacttggt
2941 tctacagctg gttctggcac cagtgtctcg agtctcccgt caactgcaag gactaggagc
3001 tggattgagg atcaaaacag gaatttgtca cctttcatga ggggagctca caacatatcg
3061 tttgtcaccc caccatctag tagatcctct agccaaggca cagtctcaac cgtgcctaaa
3121 gaagttttgg actcctggac tggcgctttc aacacgcgca ggcagcctct cttcgctcac
3181 attcgtaagc gaggggagtc acgggcgtaa tgtgaaaaga caaaattgat tatctttcct
3241 ttctttaggg tcttt
//