Typing tool
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Complete norovirus genomes
AY588016 | GII.4 Farmington Hills | ||
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GII.P4 Farmington Hills |
ORF1: 1..801 ORF2: 782..2404 ORF3: 2404..3210LOCUS AY588016 3255 bp RNA linear VRL 26-JUL-2016 DEFINITION Norovirus Hu/NLV/Oxford/B5S9/2002/UK non-structural polyprotein gene, partial cds; and capsid protein and ORF3 genes, complete cds. ACCESSION AY588016 VERSION AY588016.1 KEYWORDS . SOURCE Norovirus Hu/NLV/Oxford/B5S9/2002/UK ORGANISM Norovirus Hu/NLV/Oxford/B5S9/2002/UK Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3255) AUTHORS Dingle,K.E. CONSRTM Norovirus Infection Control in Oxfordshire Communities Hospitals TITLE Mutation in a Lordsdale norovirus epidemic strain as a potential indicator of transmission routes JOURNAL J. Clin. Microbiol. 42 (9), 3950-3957 (2004) PUBMED 15364974 REFERENCE 2 (bases 1 to 3255) AUTHORS Dingle,K.E. TITLE Direct Submission JOURNAL Submitted (01-APR-2004) Nuffield Department of Clinical Sciences, Oxford University, Microbiology Level 6, John Radcliffe Hospital, Oxford, Oxfordshire OX3 0SA, UK FEATURES Location/Qualifiers source 1..3255 /organism="Norovirus Hu/NLV/Oxford/B5S9/2002/UK" /mol_type="genomic RNA" /isolate="Hu/NLV/Oxford/B5S9/2002/UK" /db_xref="taxon:272603" CDS <1..801 /note="ORF1" /codon_start=1 /product="non-structural polyprotein" /protein_id="AAT00332.1" /translation="RWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVG DFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEI VSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFG KLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLV IAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 782..2404 /note="ORF2" /codon_start=1 /product="capsid protein" /protein_id="AAT00333.1" /translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGTHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGRIQGML TQTTRGDGSTRGHKATVSTGDVHFTPKLGSIQFNTDTNNDFETGQNTKFTPVGVVQDG NGTHQNEPQQWVLPSYSGRTGHNVHLAPAVAPTFPGEQLLFFRSAMPGCSGYPNMNLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 2404..3210 /codon_start=1 /product="ORF3" /protein_id="AAT00334.1" /translation="MAGAFFAGLASDVLGSGLGSLISAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMEVKRAMLLEGGFSETDASRGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNPRATVPARGFSNAPS NTSTATSVYSNQTVSTRLGSTAGSGTSVSSLPSTARTRSWIEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 cggtgggatt caacacaaca gagagctgtg ttggcagcag ctctagaaat catggttaaa 61 ttctcctcag aaccacattt ggctcaggta gtcgcagaag accttctctc tcctagcgtg 121 gtggatgtgg gtgacttcac aatatcaatc aacgagggtc tcccctctgg ggtaccctgc 181 acctcccaat ggaactccat cgcccactgg cttctcactc tctgtgcgct ctctgaagtc 241 acaaatctgt cccctgacat catacaggct aattccctct tctcctttta tggtgatgat 301 gaaatcgtta gcacagacat aaaattggac ccagagaagt tgacagcaaa gctcagggaa 361 tatgggctga aaccaacccg ccctgacaaa actgaagggc cccttgttat ctctgaagac 421 ttaaatggtc tgactttcct gcggagaact gtgacccgcg acccagctgg ttggtttgga 481 aaactggagc agagttcaat actcaggcaa atgtactgga ctaggggccc caaccatgaa 541 gacccatctg aaacaatgat tccacactcc caaagaccca tacagttgat gtccttactg 601 ggagaggccg cactccacgg cccagcattc tacagcaaaa tcagcaagtt agtcattgca 661 gagctaaaag aaggtggcat ggatttttac gtgcccaggc aagagccaat gttcagatgg 721 atgagattct cagatctgag cacgtgggag ggcgatcgca atctggctcc cagttttgtg 781 aatgaagatg gcgtcgaatg acgccaaccc atctgatggg tccacagcca acctcgtccc 841 agaggtcaac aatgaggtta tggctttgga gcccgttgtt ggtgccgcta ttgcggcacc 901 tgtagcgggc caacaaaatg taattgaccc ctggattaga aataattttg tacaagcccc 961 tggtggagag tttacagtat ctcctagaaa cgctccaggt gaaatactat ggagcgcgcc 1021 cttgggccct gatctgaatc cctacctttc tcatttggcc agaatgtaca atggttatgc 1081 aggtggcttt gaagtgcagg taatccttgc ggggaatgcg ttcaccgccg ggaaaatcat 1141 atttgcagca gtcccaccaa atttcccaac tgaaggcttg agccccagcc aggtcactat 1201 gttcccccat ataatagtag atgttaggca actggaacct gtgttgatcc ccttacctga 1261 tgttaggaac aatttctatc actacaacca atcaaatgac cccaccatta aattgatagc 1321 aatgctgtac acaccactta gggctaataa tgctggggaa gatgtcttca cagtctcttg 1381 tcgagtcctc acgaggccat cccccgattt tgattttata tttttggtgc cacccacagt 1441 tgagtcaaga actaaaccat tcaccgtccc aattttaact gttgaggaaa tgaccaattc 1501 aagattccct attcctttgg aaaagttgtt cacgggtcct agcggtgcct ttgttgttca 1561 accacaaaat ggcaggtgca cgactgatgg cgtactctta ggcaccaccc aactgtctcc 1621 tgtcaacatc tgcaccttca gaggggatgt cacccacatt gcaggtactc ataattacac 1681 aatgaatttg gcttctcaaa attggaacaa ttatgaccca acagaagaaa tcccagcccc 1741 tctggggacc ccagatttcg tgggaaggat ccaaggcatg ctcacccaaa ctacaagggg 1801 agatggctct acccgcggcc acaaagctac agtgagcact ggggatgtcc acttcactcc 1861 aaagctgggc agtattcagt tcaacactga tacaaacaat gattttgaaa ctggccaaaa 1921 cacgaaattc accccagtcg gtgttgtcca ggatggtaat ggtacccacc aaaatgaacc 1981 tcaacaatgg gtgctcccaa gctactcagg tagaactggt cataatgtac acctagcccc 2041 cgccgtagcc cccacttttc cgggtgagca acttcttttc ttcaggtccg ctatgcccgg 2101 atgcagcggg taccccaaca tgaatttgga ttgtctactc ccccaagaat gggtgcagca 2161 cttctatcaa gaggcagctc cagcacaatc tgatgtggct ctgctgagat ttgtgaatcc 2221 agacacaggt agggttctat ttgagtgcaa gcttcataaa tcaggctatg tcacagtggc 2281 tcacactggc cagcatgatt tggttatccc ccccaatggc tactttagat ttgattcctg 2341 ggtcaaccaa ttctacacac ttgcccccat gggaaatggg acggggcgta gacgtgcatt 2401 ataatggctg gagctttctt cgccgggctg gcatctgatg tccttggctc tggacttggt 2461 tccctaatca gcgctggggc tggggccatc aaccaaaaag ttgaatttga aaataacaga 2521 aaattgcaac aagcttcctt ccaatttagt agcaatctac aacaggcttc ctttcaacat 2581 gataaagaga tgctccaagc acaaattgag gccactaaaa agttgcaaca gggtatgatg 2641 gaagttaaac gggcaatgct tctagagggt ggattctctg aaacagatgc atcccgtggg 2701 gcaatcaacg cccccatgac aaaggctttg gactggagcg gaacaaggta ctgggctcct 2761 gatgctagga ctacaacata caatgcaggc cgcttttcca cccctcaacc ctcgggggca 2821 ctgccaggaa ggacaaatcc cagggctact gtccccgctc ggggcttctc caatgcacct 2881 tctaatactt ctactgctac ttctgtgtat tcaaatcaaa ctgtttcaac gagacttggt 2941 tctacagctg gttctggcac cagtgtctcg agtctcccgt caactgcaag gactaggagc 3001 tggattgagg atcaaaacag gaatttgtca cctttcatga ggggagctca caacatatcg 3061 tttgtcaccc caccatctag tagatcctct agccaaggca cagtctcaac cgtgcctaaa 3121 gaagttttgg actcctggac tggcgctttc aacacgcgca ggcagcctct cttcgctcac 3181 attcgtaagc gaggggagtc acgggcgtaa tgtgaaaaga caaaattgat tatctttcct 3241 ttctttaggg tcttt //