Typing tool
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Typing tool
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Complete norovirus genomes
| AY588012 | GII.4 Farmington Hills | |
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| GII.P4 Farmington Hills |
ORF1: 1..801
ORF2: 782..2404
ORF3: 2404..3210
LOCUS AY588012 3255 bp RNA linear VRL 26-JUL-2016
DEFINITION Norovirus Hu/NLV/Oxford/B3S20/2003/UK non-structural polyprotein
gene, partial cds; and capsid protein and ORF3 genes, complete cds.
ACCESSION AY588012
VERSION AY588012.1
KEYWORDS .
SOURCE Norovirus Hu/NLV/Oxford/B3S20/2003/UK
ORGANISM Norovirus Hu/NLV/Oxford/B3S20/2003/UK
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3255)
AUTHORS Dingle,K.E.
CONSRTM Norovirus Infection Control in Oxfordshire Communities Hospitals
TITLE Mutation in a Lordsdale norovirus epidemic strain as a potential
indicator of transmission routes
JOURNAL J. Clin. Microbiol. 42 (9), 3950-3957 (2004)
PUBMED 15364974
REFERENCE 2 (bases 1 to 3255)
AUTHORS Dingle,K.E.
TITLE Direct Submission
JOURNAL Submitted (01-APR-2004) Nuffield Department of Clinical Sciences,
Oxford University, Microbiology Level 6, John Radcliffe Hospital,
Oxford, Oxfordshire OX3 0SA, UK
FEATURES Location/Qualifiers
source 1..3255
/organism="Norovirus Hu/NLV/Oxford/B3S20/2003/UK"
/mol_type="genomic RNA"
/isolate="Hu/NLV/Oxford/B3S20/2003/UK"
/db_xref="taxon:272599"
CDS <1..801
/note="ORF1"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="AAT00320.1"
/translation="RWDSTQQRAVLASALEIMVKFSSEPHLAQVVAEDLLSPSVVDVG
DFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEI
VSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFG
KLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLV
IAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 782..2404
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="AAT00321.1"
/translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGTHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGRIQGML
TQTTRGDGSTRGHKATVSTGDVHFTPKLGSIQFNTDTNNDFETGQNTRFTPVGVVQDG
NGTHQNEPQQWVLPSYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2404..3210
/codon_start=1
/product="ORF3"
/protein_id="AAT00322.1"
/translation="MAGAFFAGLASDVLGSGLGSLISAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMEVKRAMLLEGGFSETDASRGAIN
APMTKALDWSGTRYWAPDARTTTYNTGRFSTPQPSGALPGRTNPRATVPARGFSNAPS
NTSTATSVYSNQTVSTRLGSTAGSGTSVSSLPSTARTRSWIEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 cggtgggatt caacacaaca gagagctgtg ttggcatcag ctctagaaat catggttaaa
61 ttctcctcag aaccacattt ggctcaggta gtcgcagaag accttctttc tcctagcgtg
121 gtggatgtgg gtgacttcac aatatcaatc aacgagggcc tcccctctgg ggtaccctgc
181 acctcccaat ggaactccat cgcccactgg cttctcactc tctgcgcgct ctctgaagtt
241 acaaatctgt cccctgacat catacaggct aattccctct tctcctttta tggtgatgat
301 gaaatcgtta gcacagacat aaaattggac ccagagaagt tgacagcaaa gctcagggaa
361 tatgggctga aaccaacccg ccctgacaaa actgaagggc cccttgttat ctctgaagac
421 ttaaatggtc tgactttcct gcggagaact gtgacccgcg acccagctgg ttggtttgga
481 aaactggagc agagttcaat actcaggcaa atgtactgga ctaggggccc caaccatgaa
541 gacccatctg aaacaatgat tccacactcc caaagaccca tacagttgat gtccttactg
601 ggagaggccg cactccacgg cccagcattc tacagcaaaa tcagcaagtt agtcattgca
661 gagctaaaag aaggtggcat ggatttttac gtgcccaggc aagagccaat gttcaggtgg
721 atgagattct cagatctgag cacgtgggag ggcgatcgca atctggctcc cagttttgtg
781 aatgaagatg gcgtcgaatg acgccaaccc atctgatggg tccacagcca acctcgtccc
841 agaggtcaac aatgaggtta tggctttgga gcccgttgtt ggtgccgcta ttgcggcacc
901 tgtagcgggc caacaaaatg taattgaccc ctggattaga aataattttg tacaagcccc
961 tggtggagag tttacagtat cccctagaaa cgctccaggt gaaatactat ggagcgcgcc
1021 cttgggccct gatctgaatc cctacctttc tcatttggcc agaatgtaca atggctatgc
1081 aggtggcttt gaagtgcagg taatccttgc ggggaatgcg ttcaccgccg ggaaaatcat
1141 atttgcagca gtcccaccaa atttcccaac tgaaggcttg agccccagcc aggtcactat
1201 gttcccccat ataatagtag atgttaggca actggaacct gtgttgatcc ccttacctga
1261 tgttaggaac aatttctacc attacaacca atcaaatgac cccaccatta aattgatagc
1321 aatgctgtac acaccactta gggctaataa tgctggggaa gatgtcttca cagtctcttg
1381 tcgagtcctc acgaggccat cccccgattt tgatttcata tttttggtgc cacccacagt
1441 tgagtcaaga actaaaccat tcaccgtccc aattttaact gttgaggaaa tgaccaattc
1501 aagattccct attcctttgg aaaagttgtt cacgggtcct agcggtgcct ttgttgttca
1561 accacaaaat ggcaggtgca cgactgatgg cgtactctta ggcactaccc aactgtctcc
1621 tgtcaacatc tgcaccttca gaggggatgt cacccatatt gcaggtactc ataattacac
1681 aatgaatttg gcttctcaaa attggaacaa ttatgaccca acagaagaaa tcccagcccc
1741 tctggggacc ccagatttcg tgggaaggat ccaaggcatg ctcacccaaa ctacaagggg
1801 agatggctct acccgcggcc acaaagctac agtgagcact ggggatgtcc acttcactcc
1861 aaagctaggc agtattcagt tcaacactga tacaaacaat gattttgaaa ctggccaaaa
1921 cacgagattc accccagttg gtgttgtcca ggatggtaat ggcacccacc aaaatgaacc
1981 tcaacaatgg gtgctcccaa gctactcagg tagaactggt cataatgtac acctagcccc
2041 cgccgtagcc cccacttttc cgggtgagca acttcttttc ttcaggtcca ctatgcccgg
2101 atgcagcggg taccccaaca tgaatttgga ttgtctactc ccccaagaat gggtgcagca
2161 cttctaccaa gaggcagctc cagcacaatc tgatgtggct ctgctaagat ttgtgaatcc
2221 agacacaggt agggttctat ttgagtgcaa gcttcataaa tcaggctatg tcacagtggc
2281 tcacactggc cagcatgatt tggttatccc ccccaatggc tactttagat ttgattcctg
2341 ggtcaaccaa ttctacacac ttgcccccat gggaaatggg acggggcgta gacgtgcatt
2401 ataatggctg gagctttctt cgccgggctg gcatctgatg tccttggctc tggacttggt
2461 tccctaatca gtgctggggc tggggccatc aaccaaaaag ttgagtttga aaataacagg
2521 aaattgcaac aagcttcctt ccaatttagt agcaatctac aacaggcttc ctttcaacat
2581 gataaagaga tgctccaagc acaaattgag gccactaaaa agttgcaaca gggtatgatg
2641 gaagttaaac gggcaatgct cctagagggt ggattctctg aaacagatgc atcccgtggg
2701 gcaatcaacg cccccatgac aaaggcttta gactggagcg gaacaaggta ctgggctcct
2761 gatgctagga ctacaacata caacacaggc cgcttttcca cccctcaacc ctcgggggca
2821 ctgccaggaa ggaccaatcc cagggctact gtccccgctc ggggcttctc caatgcacct
2881 tctaatactt ctactgctac ttctgtgtat tcaaatcaaa ctgtttcaac gagacttggt
2941 tctacagctg gctctggcac cagtgtctcg agtctcccgt caactgcaag gactaggagc
3001 tggattgagg atcaaaacag gaatttgtca cctttcatga ggggggctca caacatatcg
3061 tttgtcaccc caccatctag tagatcctct agccaaggca cagtctcaac cgtgcctaaa
3121 gaagttttgg actcctggac tggcgctttc aacacgcgca ggcagcctct cttcgctcac
3181 attcgtaagc gaggggagtc acgggcgtaa tgtgaaaaga caaaattgat tatctttcct
3241 ttctttaggg tcttt
//