Human calicivirus
Typing tool

Complete norovirus genomes

AY502022  GII.4 Farmington Hills
 GII.P4 Farmington Hills

Length: 2,0 | 3 CDS 

ORF1: 1..274
ORF2: 255..1877
ORF3: 1877..2000

LOCUS       AY502022                2000 bp    RNA     linear   VRL 26-JUL-2016
DEFINITION  Norovirus genogroup 2 strain Hu/NoV/CS-G4/2002/USA nonstructural
            polyprotein gene, partial cds; capsid protein gene, complete cds;
            and minor structural protein gene, partial cds.
ACCESSION   AY502022
VERSION     AY502022.1
KEYWORDS    .
SOURCE      Norovirus GII
  ORGANISM  Norovirus GII
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 2000)
  AUTHORS   Zheng,D.P., Ando,T., Fankhauser,R.L., Beard,R.S., Glass,R.I. and
            Monroe,S.S.
  TITLE     Norovirus classification and proposed strain nomenclature
  JOURNAL   Virology 346 (2), 312-323 (2006)
   PUBMED   16343580
REFERENCE   2  (bases 1 to 2000)
  AUTHORS   Zheng,D.-P. and Monroe,S.S.
  TITLE     Phylogenetic analysis of Norovirus outbreaks in land and on cruise
            ships
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 2000)
  AUTHORS   Zheng,D.-P. and Monroe,S.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-DEC-2003) Respiratory and Enteric Viruses Branch,
            Division of Viral and Rickettsial Diseases, Centers for Disease
            Control and Prevention, 1600 Clifton Rd, MS: G04, Atlanta, GA
            30333, USA
FEATURES             Location/Qualifiers
     source          1..2000
                     /organism="Norovirus GII"
                     /mol_type="genomic RNA"
                     /strain="Hu/NoV/CS-G4/2002/USA"
                     /isolate="2003707343"
                     /host="Homo sapiens"
                     /db_xref="taxon:122929"
                     /country="USA"
                     /note="type: GII/4"
     CDS             <1..274
                     /note="ORF1"
                     /codon_start=2
                     /product="nonstructural polyprotein"
                     /protein_id="AAR97659.1"
                     /translation="PNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIA
                     ELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             255..1877
                     /note="ORF2"
                     /codon_start=1
                     /product="capsid protein"
                     /protein_id="AAR97660.1"
                     /translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
                     QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
                     FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
                     VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
                     TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT
                     QLSPVNICTFRGDVTHIAGTHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGRIQGML
                     TQTTRGDGSTRGHKATVSTGDVHFTPKLGSIQFNTDTNNDFETGQNTKFTPVGVVQDG
                     NGTHQNEPQQWVLPSYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD
                     CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
                     IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
     CDS             1877..>2000
                     /note="ORF3"
                     /codon_start=1
                     /product="minor structural protein"
                     /protein_id="AAR97661.1"
                     /translation="MAGAFFAGLASDVLGSGLGSLISAEAGAINQKVEFENNRKL"
ORIGIN      
        1 ccccaaccat gaagacccat ctgaaacaat gattccacac tcccaaagac ccatacagtt
       61 gatgtcctta ctgggagagg ccgcactcca cggcccagca ttctacagca aaatcagcaa
      121 gttagtcatt gcagagctaa aagaaggtgg catggatttt tacgtgccca ggcaagagcc
      181 aatgttcaga tggatgagat tctcagatct gagcacgtgg gagggcgatc gcaatctggc
      241 tcccagtttt gtgaatgaag atggcgtcga atgacgccaa cccatctgat gggtccacag
      301 ccaacctcgt cccagaggtc aacaatgagg ttatggcttt ggagcccgtt gttggtgccg
      361 ctattgcggc acctgtagcg ggccaacaaa atgtaattga cccctggatt agaaataatt
      421 ttgtacaagc ccctggtgga gagtttacag tgtcacctag aaacgctcca ggtgaaatac
      481 tatggagcgc gcccttgggc cctgatctga atccctacct ttctcatttg gccagaatgt
      541 acaatggcta tgcaggtggc tttgaagtgc aggtaatcct tgcggggaat gcgttcaccg
      601 ccgggaaaat catatttgca gcagtcccac caaatttccc aactgaaggc ttgagcccca
      661 gccaggtcac tatgttcccc catataatag tagatgttag gcaactggaa cctgtgttga
      721 tccccttacc tgatgttagg aacaatttct atcactacaa ccaatcaaat gaccccacca
      781 ttaaattgat agcaatgctg tacacaccac ttagggctaa taatgctggg gaagatgtct
      841 tcacagtctc ttgtcgagtc ctcacgaggc catcccccga ttttgatttc atatttttgg
      901 tgccacccac agttgagtca agaactaaac cattcaccgt cccaatttta actgttgagg
      961 aaatgaccaa ttcaagattc cccattcctt tggaaaagtt gttcacgggt cctagcggtg
     1021 cctttgttgt tcaaccacaa aatggcaggt gcacgactga tggcgtgctc ttaggcacta
     1081 cccaactgtc tcctgtcaac atctgcacct tcagagggga tgtcacccac attgcaggta
     1141 ctcataatta cacaatgaat ttggcttctc aaaattggaa caattatgac ccaacagaag
     1201 aaatcccagc ccctctgggg accccagatt tcgtgggaag gatccaaggc atgctcaccc
     1261 aaactacaag gggggatggc tctacccgcg gccacaaagc tacagtgagc actggggatg
     1321 tccacttcac tccaaagctg ggcagtattc agttcaacac tgatacaaac aatgattttg
     1381 aaactggcca aaacacgaaa ttcaccccag tcggtgttgt ccaggatggt aatggtaccc
     1441 accaaaatga acctcaacaa tgggtgctcc caagctactc aggtagaact ggtcataatg
     1501 tacacctagc ccccgccgta gcccccactt ttccgggtga gcaacttctt ttcttcaggt
     1561 ccactatgcc cggatgcagc gggtacccca acatgaattt ggattgtcta ctcccccagg
     1621 aatgggtgca gcacttctac caagaggcag ctccagcaca atctgatgtg gctctgctaa
     1681 gatttgtgaa tccagacaca ggtagggttc tattcgagtg caagcttcat aaatcaggct
     1741 atgtcacagt ggctcacact ggccagcatg atttggttat cccccccaat ggctacttta
     1801 gatttgattc ttgggtcaac caattctaca cacttgcccc catgggaaat gggacggggc
     1861 gtagacgtgc attataatgg ctggagcttt cttcgccggg ctggcatctg atgtccttgg
     1921 ctctggactt ggttccctaa tcagtgctga ggctggggcc atcaaccaaa aagttgaatt
     1981 tgaaaataac agaaaattgc
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