Human calicivirus
			Typing tool

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Complete norovirus genomes

AY502019	GII.4 Farmington Hills
	GII.P4 Farmington Hills

Length: 2,128 | 3 CDS

ORF1: 1..280
ORF2: 261..1883
ORF3: 1883..2128
LOCUS       AY502019                2128 bp    RNA     linear   VRL 26-JUL-2016
DEFINITION  Norovirus genogroup 2 strain Hu/NoV/Anchorage/2002/USA
            nonstructural polyprotein gene, partial cds; capsid protein gene,
            complete cds; and minor structural protein gene, partial cds.
ACCESSION   AY502019
VERSION     AY502019.1
KEYWORDS    .
SOURCE      Norovirus GII
  ORGANISM  Norovirus GII
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 2128)
  AUTHORS   Zheng,D.P., Ando,T., Fankhauser,R.L., Beard,R.S., Glass,R.I. and
            Monroe,S.S.
  TITLE     Norovirus classification and proposed strain nomenclature
  JOURNAL   Virology 346 (2), 312-323 (2006)
   PUBMED   16343580
REFERENCE   2  (bases 1 to 2128)
  AUTHORS   Zheng,D.-P. and Monroe,S.S.
  TITLE     Phylogenetic analysis of Norovirus outbreaks in land and on cruise
            ships
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 2128)
  AUTHORS   Zheng,D.-P. and Monroe,S.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-DEC-2003) Respiratory and Enteric Viruses Branch,
            Division of Viral and Rickettsial Diseases, Centers for Disease
            Control and Prevention, 1600 Clifton Rd, MS: G04, Atlanta, GA
            30333, USA
FEATURES             Location/Qualifiers
     source          1..2128
                     /organism="Norovirus GII"
                     /mol_type="genomic RNA"
                     /strain="Hu/NoV/Anchorage/2002/USA"
                     /isolate="2003707092"
                     /host="Homo sapiens"
                     /db_xref="taxon:122929"
                     /country="USA"
                     /note="type: GII/4"
     CDS             <1..280
                     /note="ORF1"
                     /codon_start=2
                     /product="nonstructural polyprotein"
                     /protein_id="AAR97650.1"
                     /translation="RGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLV
                     IAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             261..1883
                     /note="ORF2"
                     /codon_start=1
                     /product="capsid protein"
                     /protein_id="AAR97651.1"
                     /translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
                     QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
                     FEVQVILAGNAFTAGKIVFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
                     VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
                     TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
                     QLSPVNICTFRGDVTHIAGTHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGRIQGML
                     TQTTRGDGSTRGHKATVSTGDVHFTPKLGSIQFNTDTNNDFETGQNTKFTPVGVVQDG
                     NGTHQNEPQQWVLPSYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD
                     CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
                     IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
     CDS             1883..>2128
                     /note="ORF3"
                     /codon_start=1
                     /product="minor structural protein"
                     /protein_id="AAR97652.1"
                     /translation="MAGAFFAGLASDVLGSGLGSLISAGAGAINQKVEFENNRKLQQA
                     SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMEVK"
ORIGIN      
        1 taggggcccc aaccatgaag acccatctga aacaatgatt ccacactccc aaagacccat
       61 acagttgatg tccttactgg gagaggccgc actccacggc ccagcattct acagcaaaat
      121 cagcaagtta gtcattgcag agctaaaaga aggtggcatg gatttttacg tgcccaggca
      181 agagccaatg ttcagatgga tgagattctc agatctgagc acgtgggagg gcgatcgcaa
      241 tctggctccc agttttgtga atgaagatgg cgtcgaatga cgccaaccca tctgatgggt
      301 ccacagccaa cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgttgttg
      361 gtgccgctat tgcggcacct gtagcgggcc aacaaaatgt aattgacccc tggattagaa
      421 ataattttgt acaagcccct ggtggagagt ttacagtatc ccccagaaac gctccaggtg
      481 aaatactatg gagcgcgccc ttgggccctg atctgaatcc ctacctttct catttggcca
      541 gaatgtacaa tggctatgca ggtggctttg aagtgcaggt aatccttgcg gggaatgcgt
      601 ttaccgccgg gaaaatcgta tttgcagcag tcccaccaaa tttcccaact gaaggcttga
      661 gccccagcca ggtcactatg ttcccccata taatagtaga tgttaggcaa ctggaacctg
      721 tgttgatccc cttacctgat gttaggaaca atttctatca ctacaaccaa tcaaatgacc
      781 ccaccattaa attgatagca atgttgtaca caccacttag ggctaataat gctggggaag
      841 atgtcttcac agtctcttgt cgagtcctca cgaggccatc ccccgatttt gatttcatat
      901 ttttggtgcc gcccacagtt gagtcaagaa ctaaaccatt caccgtccca attttaactg
      961 ttgaggaaat gaccaattca agattcccca ttcctttgga aaagttgttc acgggtccta
     1021 gcagtgcctt tgttgttcaa ccacaaaatg gcaggtgcac gactgatggc gtgctcttag
     1081 gcactaccca actgtctcct gtcaacatct gcaccttcag aggggatgtc acccacattg
     1141 caggtactca taattacaca atgaatttgg cttctcaaaa ttggaacaat tatgacccaa
     1201 cagaagaaat cccagcccct ctggggaccc cagatttcgt gggaaggatc caaggcatgc
     1261 tcacccaaac tacaaggggg gatggctcta cccgcggcca caaagctaca gtgagcactg
     1321 gggatgtcca cttcactcca aagctgggca gtattcagtt caacactgat acaaacaatg
     1381 attttgaaac tggccaaaac acgaaattca ccccagtcgg tgttgtccag gatggtaatg
     1441 gtacccacca aaatgaacct caacaatggg tgctcccaag ctactcaggt agaactggtc
     1501 ataatgtaca cctagcccct gccgtagccc ccacttttcc gggtgagcaa cttcttttct
     1561 tcaggtccac tatgcccgga tgcagcgggt accccaacat gaatttggat tgcctactcc
     1621 cccaggaatg ggtgcagcac ttctaccaag aggcagctcc agcacaatct gatgtggctc
     1681 tgctaagatt tgtgaaccca gacacaggta gggttctatt tgagtgcaag cttcataaat
     1741 caggctatgt cacagtggct cacactggcc agcatgattt ggttatcccc cccaatggct
     1801 actttagatt tgattcctgg gtcaaccaat tctacacact tgcccccatg ggaaatggga
     1861 cggggcgtag acgtgcatta taatggctgg agctttcttc gccgggctgg catctgatgt
     1921 ccttggctct ggacttggtt ccctaatcag tgctggggct ggggccatca accaaaaagt
     1981 tgaatttgaa aataacagaa aattgcaaca agcttccttc caatttagta gcaatctaca
     2041 acaggcttcc tttcaacatg ataaagagat gctccaagca caaattgagg ccactaaaaa
     2101 gttgcaacag ggtatgatgg aagttaaa
//