Typing tool
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Complete norovirus genomes
AY502018 | GII.4 Farmington Hills | ||
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GII.P4 Farmington Hills |
ORF1: 1..280 ORF2: 261..1883 ORF3: 1883..2128LOCUS AY502018 2128 bp RNA linear VRL 26-JUL-2016 DEFINITION Norovirus genogroup 2 strain Hu/NoV/CS-D1/2002/CAN nonstructural polyprotein gene, partial cds; capsid protein gene, complete cds; and minor structural protein gene, partial cds. ACCESSION AY502018 VERSION AY502018.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 2128) AUTHORS Zheng,D.P., Ando,T., Fankhauser,R.L., Beard,R.S., Glass,R.I. and Monroe,S.S. TITLE Norovirus classification and proposed strain nomenclature JOURNAL Virology 346 (2), 312-323 (2006) PUBMED 16343580 REFERENCE 2 (bases 1 to 2128) AUTHORS Zheng,D.-P. and Monroe,S.S. TITLE Phylogenetic analysis of Norovirus outbreaks in land and on cruise ships JOURNAL Unpublished REFERENCE 3 (bases 1 to 2128) AUTHORS Zheng,D.-P. and Monroe,S.S. TITLE Direct Submission JOURNAL Submitted (11-DEC-2003) Respiratory and Enteric Viruses Branch, Division of Viral and Rickettsial Diseases, Centers for Disease Control and Prevention, 1600 Clifton Rd, MS: G04, Atlanta, GA 30333, USA FEATURES Location/Qualifiers source 1..2128 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Hu/NoV/CS-D1/2002/CAN" /isolate="2002745719" /host="Homo sapiens" /db_xref="taxon:122929" /country="Canada" /note="type: GII/4" CDS <1..280 /note="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="AAR97647.1" /translation="RGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLV IAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 261..1883 /note="ORF2" /codon_start=1 /product="capsid protein" /protein_id="AAR97648.1" /translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGTHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGRIQGML TQTTRGDGSTRGHKATVSTGDVHFTPKLGSIQFNTDTNNDFETGQNTKFTPVGVVQDG NGTHQNEPQQWVLPSYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 1883..>2128 /note="ORF3" /codon_start=1 /product="minor structural protein" /protein_id="AAR97649.1" /translation="MAGAFFAGLASDVLGSGLGSLISAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMEVK" ORIGIN 1 taggggcccc aaccatgaag acccatctga aacaatgatt ccacactccc aaagacccat 61 acagttgatg tccttactgg gagaggccgc actccacggc ccagcattct acagcaaaat 121 cagcaagtta gtcattgcag agctaaaaga aggtggcatg gatttttacg tgcccaggca 181 agagccaatg ttcagatgga tgagattctc agatctgagc acgtgggagg gcgatcgcaa 241 tctggctccc agttttgtga atgaagatgg cgtcgaatga cgccaaccca tctgatgggt 301 ccacagccaa cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgttgttg 361 gtgccgctat tgcggcacct gtagcgggcc aacaaaatgt aattgacccc tggattagaa 421 ataattttgt acaagcccct ggtggagagt ttacagtatc ccctagaaac gctccaggtg 481 aaatactatg gagcgcgccc ttgggccctg atctgaatcc ctacctttct catttggcca 541 gaatgtacaa tggctatgca ggtggctttg aagtgcaggt aatccttgcg gggaatgcgt 601 tcaccgccgg gaaaatcata tttgcagcag tcccaccaaa tttcccaact gaaggcttga 661 gccccagcca ggtcactatg ttcccccata taatagtaga tgttaggcaa ctggaacctg 721 tgttgatccc cttacctgat gttaggaaca atttctatca ctacaaccaa tcaaatgacc 781 ccaccattaa attgatagca atgctgtaca caccacttag ggctaataat gctggggaag 841 atgtcttcac agtctcttgt cgagtcctca cgaggccatc ccccgatttt gatttcatat 901 ttttggtgcc acccacagtt gagtcaagaa ctaaaccatt caccgtccca attttaactg 961 ttgaggaaat gaccaattca agattcccta ttcctttgga aaagttgttc acgggtccta 1021 gcggtgcctt tgttgttcaa ccacaaaatg gcaggtgcac gactgatggc gtactcttag 1081 gcactaccca actgtctcct gtcaacatct gcaccttcag aggggatgtc acccacattg 1141 caggtactca taattacaca atgaatttgg cttctcaaaa ttggaacaat tatgacccaa 1201 cagaagaaat cccagcccct ctggggaccc cagatttcgt gggaaggatc caaggcatgc 1261 tcacccaaac tacaagggga gatggctcta cccgcggcca caaagctaca gtgagcactg 1321 gggatgtcca cttcactcca aagctgggca gtattcagtt caacactgat acaaacaatg 1381 attttgaaac tggccaaaac acgaaattca ccccagtcgg tgttgtccag gatggtaatg 1441 gtacccacca aaatgaacct caacaatggg tgctcccaag ctactcaggt agaactggtc 1501 ataatgtaca cctagccccc gccgtagccc ccacttttcc gggtgagcaa cttcttttct 1561 tcaggtccac tatgcccgga tgcagcgggt accccaacat gaatttggat tgtctactcc 1621 cccaagaatg ggtgcagcac ttctaccaag aggcagctcc agcacaatct gatgtggctc 1681 tgctaagatt tgtgaatcca gacacaggta gggttctatt tgagtgcaag cttcataaat 1741 caggctatgt cacagtggct cacactggcc agcatgattt ggttatcccc cccaatggct 1801 actttagatt tgattcctgg gtcaaccaat tctacacact tgcccccatg ggaaatggga 1861 cggggcgtag acgtgcatta taatggctgg agctttcttc gccgggctgg catctgatgt 1921 ccttggctct ggacttggtt ccctaatcag tgctggggct ggggccatca accaaaaagt 1981 tgaatttgaa aataacagaa aattgcaaca agcttccttc caatttagta gcaatctaca 2041 acaggcttcc tttcaacatg ataaagagat gctccaagca caaattgagg ccactaaaaa 2101 gttgcaacag ggtatgatgg aagttaaa //