Human calicivirus
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Complete norovirus genomes

AY502017	GII.4 Farmington Hills
	GII.P4 Farmington Hills

Length: 1,939 | 3 CDS

ORF1: 1..276
ORF2: 257..1879
ORF3: 1879..1939
LOCUS       AY502017                1939 bp    RNA     linear   VRL 26-JUL-2016
DEFINITION  Norovirus genogroup 2 strain Hu/NoV/Germanton/2002/USA
            nonstructural polyprotein gene, partial cds; capsid protein gene,
            complete cds; and minor structural protein gene, partial cds.
ACCESSION   AY502017
VERSION     AY502017.1
KEYWORDS    .
SOURCE      Norovirus GII
  ORGANISM  Norovirus GII
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 1939)
  AUTHORS   Zheng,D.P., Ando,T., Fankhauser,R.L., Beard,R.S., Glass,R.I. and
            Monroe,S.S.
  TITLE     Norovirus classification and proposed strain nomenclature
  JOURNAL   Virology 346 (2), 312-323 (2006)
   PUBMED   16343580
REFERENCE   2  (bases 1 to 1939)
  AUTHORS   Zheng,D.-P. and Monroe,S.S.
  TITLE     Phylogenetic analysis of Norovirus outbreaks in land and on cruise
            ships
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 1939)
  AUTHORS   Zheng,D.-P. and Monroe,S.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-DEC-2003) Respiratory and Enteric Viruses Branch,
            Division of Viral and Rickettsial Diseases, Centers for Disease
            Control and Prevention, 1600 Clifton Rd, MS: G04, Atlanta, GA
            30333, USA
FEATURES             Location/Qualifiers
     source          1..1939
                     /organism="Norovirus GII"
                     /mol_type="genomic RNA"
                     /strain="Hu/NoV/Germanton/2002/USA"
                     /isolate="2002745711"
                     /host="Homo sapiens"
                     /db_xref="taxon:122929"
                     /country="USA"
                     /note="type: GII/4"
     CDS             <1..276
                     /note="ORF1"
                     /codon_start=1
                     /product="nonstructural polyprotein"
                     /protein_id="AAR97644.1"
                     /translation="GPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVI
                     AELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             257..1879
                     /note="ORF2"
                     /codon_start=1
                     /product="capsid protein"
                     /protein_id="AAR97645.1"
                     /translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
                     QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
                     FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
                     VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
                     TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT
                     QLSPVNICTFRGDVTHIAGTHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGRIQGML
                     TQTTRGDGSTRGHKATVSTGDVHFTPKLGSIQFNTDTNNDFETGQNTKFTPVGVVQDG
                     NGTHQNEPQQWVLPSYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD
                     CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
                     IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
     CDS             1879..>1939
                     /note="ORF3"
                     /codon_start=1
                     /product="minor structural protein"
                     /protein_id="AAR97646.1"
                     /translation="MAGAFFAGLASDVLGSGLGS"
ORIGIN      
        1 ggccccaacc atgaagaccc atctgaaaca atgattccac actcccaaag acccatacag
       61 ttgatgtcct tactgggaga ggccgcactc cacggcccag cattctacag caaaatcagc
      121 aagttagtca ttgcagagct aaaagaaggt ggcatggatt tttacgtgcc caggcaagag
      181 ccaatgttca gatggatgag attctcagat ctgagcacgt gggagggcga tcgcaatctg
      241 gctcccagtt ttgtgaatga agatggcgtc gaatgacgcc aacccatctg atgggtccac
      301 agccaacctc gtcccagagg tcaacaatga ggttatggct ttggagcccg ttgttggtgc
      361 cgctattgcg gcacctgtag cgggccaaca aaatgtaatt gacccctgga ttagaaataa
      421 ttttgtacaa gcccctggtg gagagtttac agtatcccct agaaacgctc caggtgaaat
      481 actatggagc gcgcccttgg gccctgatct aaatccctac ctttctcatt tggccagaat
      541 gtacaatggc tatgcaggtg gctttgaagt gcaggtaatc cttgcgggga atgcgttcac
      601 cgccgggaaa atcatatttg cagcagtccc accaaatttc ccaactgaag gcttgagccc
      661 cagccaggtc actatgttcc cccatataat agtagatgtt aggcaactgg aacctgtgtt
      721 gatcccctta cctgatgtta ggaacaattt ctatcactac aaccaatcaa atgaccccac
      781 cattaaattg atagcaatgc tgtacacacc acttagggct aataatgctg gggaagatgt
      841 cttcacagtc tcttgtcgag tcctcacgag gccatccccc gactttgatt tcatattttt
      901 ggtgccaccc acagttgagt caagaactaa accattcacc gtcccaattt taactgttga
      961 ggaaatgacc aattcaagat tccccattcc tttggaaaag ttgttcacgg gtcctagcgg
     1021 tgcctttgtt gttcaaccac aaaatggcag gtgcacgact gatggcgtgc tcttaggcac
     1081 tacccaactg tctcctgtca acatctgcac cttcagaggg gatgtcacgc acattgcagg
     1141 tactcataat tacacaatga atttggcttc tcaaaattgg aacaattatg acccaacaga
     1201 agaaatccca gcccctctgg ggaccccaga tttcgtggga aggatccaag gcatgctcac
     1261 ccaaactaca aggggggatg gctctacccg cggccacaaa gctacagtga gcactgggga
     1321 tgtccacttc actccaaagc tgggcagtat tcagttcaac actgatacaa acaatgattt
     1381 tgaaactggc caaaacacga aattcacccc agtcggtgtt gtccaggatg gtaatggtac
     1441 ccaccaaaat gaacctcaac aatgggtgct cccaagctac tcaggtagaa ctggtcataa
     1501 tgtacaccta gcccctgccg tagcccccac ttttccgggt gagcaacttc ttttcttcag
     1561 gtccactatg cccggatgca gcgggtaccc caacatgaat ttggattgtc tactccccca
     1621 ggaatgggtg cagcacttct accaagaggc agctccagca caatctgatg tggctctgct
     1681 aagatttgtg aatccagaca caggtagggt tctatttgag tgcaagcttc ataaatcagg
     1741 ctatgtcaca gtggctcaca ctggccagca tgatttggtt atccccccca atggctactt
     1801 tagatttgat tcctgggtca accaattcta cacacttgcc cccatgggaa atgggacggg
     1861 gcgtagacgt gcattataat ggctggagct ttcttcgccg ggctggcatc tgatgtcctt
     1921 ggctctggac ttggttccc
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