Human calicivirus
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Complete norovirus genomes

AY502016	GI.1
	GI.P1

Length: 1,898 | 3 CDS

ORF1: 1..262
ORF2: 246..1838
ORF3: 1838..1898
LOCUS       AY502016                1898 bp    RNA     linear   VRL 26-JUL-2016
DEFINITION  Norovirus genogroup 1 strain Hu/NoV/West Chester/2001/USA
            nonstructural polyprotein gene, partial cds; capsid protein gene,
            complete cds; and minor structural protein gene, partial cds.
ACCESSION   AY502016
VERSION     AY502016.1
KEYWORDS    .
SOURCE      Norovirus GI
  ORGANISM  Norovirus GI
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 1898)
  AUTHORS   Zheng,D.P., Ando,T., Fankhauser,R.L., Beard,R.S., Glass,R.I. and
            Monroe,S.S.
  TITLE     Norovirus classification and proposed strain nomenclature
  JOURNAL   Virology 346 (2), 312-323 (2006)
   PUBMED   16343580
REFERENCE   2  (bases 1 to 1898)
  AUTHORS   Zheng,D.-P. and Monroe,S.S.
  TITLE     Systematic phylogeny clustering of Noroviruses
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 1898)
  AUTHORS   Zheng,D.-P. and Monroe,S.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-DEC-2003) Respiratory and Enteric Viruses Branch,
            Division of Viral and Rickettsial Diseases, Centers for Disease
            Control and Prevention, 1600 Clifton Rd, MS: G04, Atlanta, GA
            30333, USA
FEATURES             Location/Qualifiers
     source          1..1898
                     /organism="Norovirus GI"
                     /mol_type="genomic RNA"
                     /strain="Hu/NoV/West Chester/2001/USA"
                     /host="Homo sapiens"
                     /db_xref="taxon:122928"
                     /country="USA"
                     /note="type: GI/1"
     CDS             <1..262
                     /note="ORF1"
                     /codon_start=2
                     /product="nonstructural polyprotein"
                     /protein_id="AAS86806.1"
                     /translation="SDPSETLVPHTQRKVQLISLLGEASLHGEKFYRKISSKVIHEIK
                     TGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
     CDS             246..1838
                     /note="ORF2"
                     /codon_start=1
                     /product="capsid protein"
                     /protein_id="AAS86807.1"
                     /translation="MMMASKDATSNVDGASGAGQLVPEANTSDPLAMDPVAGSSTAVA
                     TAGQVNPIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLSLGPHLNPFLLHLSQMYNG
                     WVGNMRVRIMLAGNAFTAGKIIVSCIPPGFGSHNLTIAQSTLFPHVIADVRTLDPIEV
                     PLEDVRNVLFHNNDRNQQTMRLVCMLYTPLRTGGGTGDSFVVAGRVMTCPSPDFNFLF
                     LVPPTVEQKTRPFTLPNLPLSSLSNSRAPLPISSMGISPDNVQSVQFQNGRCTLDGRL
                     VGTTPVSLSQVAKIRGTSNGTVINLTELDGTPFHPFEGPAPIGFPDLGGCDWHVNMTQ
                     FGHSSQTQFDVDTTPETFVPHLGSIQANGVGSGNYIGVLSWISPPSHPSGSQVDLWKI
                     PNYGSSITEATHLAPSVFPPGFGEVLVFFMSKIPGPGAYNLPCLLPQEYISHFASEQA
                     PTVGEAALLHYVDPDTGRNLGEFKAYPDGFLTCVPNGASSGPQQLPINGVFVFVSWVS
                     RFYQLKPVGTASSARGRLGLRR"
     CDS             1838..>1898
                     /note="ORF3"
                     /codon_start=1
                     /product="minor structural protein"
                     /protein_id="AAS86808.1"
                     /translation="MAQAIIGAIAASTAGSALGA"
ORIGIN      
        1 ctcagaccct tcagagacat tggtgccaca cacccaaaga aaagtacaat tgatctcact
       61 cttgggagag gcctcactcc atggtgaaaa attctacaga aagatctcca gcaaagtcat
      121 acatgaaatc aagactggtg ggttggagat gtacgtccca ggatggcagg ccatgttccg
      181 ctggatgcgc ttccatgacc tcggattgtg gacaggagat cgcaatctcc tgcccgaatt
      241 cgtaaatgat gatggcgtct aaggacgcta cgtcaaacgt ggatggcgcc agtggcgctg
      301 gtcagttggt accggaggct aacacttctg acccccttgc aatggatcct gtagcgggtt
      361 cttcaacggc agtcgcgact gctgggcaag taaatcccat tgatccttgg ataattaata
      421 attttgtgca agctccccaa ggggagttta caatctctcc aaacaatacc cccggtgatg
      481 tcttatttga tctgagttta ggtccccatc ttaacccctt cttgctacat ctgtcacaaa
      541 tgtataatgg ttgggttggt aacatgagag ttaggatcat gctggccggt aatgctttta
      601 ctgcaggtaa gatcatagtt tcctgtatac ctcctggttt tggatcgcat aatcttacta
      661 tagcacaatc aactctattt ccacatgtga ttgctgatgt caggactcta gaccctattg
      721 aagtaccttt ggaagatgtt aggaatgttc tttttcataa taatgacagg aatcaacaaa
      781 ccatgcgcct tgtgtgcatg ttgtataccc ccctccgtac tggtggtggt acaggtgact
      841 cctttgtggt ggcggggcga gttatgacct gccctagccc tgattttaat ttcttgttct
      901 tggtcccccc cacagtggag cagaaaacta gacctttcac ccttccaaat ttgcctttga
      961 gctctctgtc caattcacgt gctcctcttc caattagtag catgggcatt tccccagata
     1021 atgtccagag tgtacagttc caaaatggtc ggtgtacttt ggacggccgt ttggttggca
     1081 ccaccccagt ttcactgtcc caggttgcta agataagagg cacttccaat ggcactgtca
     1141 tcaacctcac cgaattggat ggcacacctt ttcacccttt tgagggccct gcccccattg
     1201 gattcccaga tcttggtggt tgtgactggc atgtcaacat gacacaattt ggtcactcta
     1261 gtcagacaca atttgatgtg gataccaccc ctgaaacctt tgttcctcat ttgggatcaa
     1321 tccaggcaaa tggtgttggt agtggcaatt acattggtgt tctcagttgg atctcccccc
     1381 catcacatcc ttctggttcc caggtggacc tctggaagat ccccaattat gggtcgagca
     1441 ttactgaggc aacacacttg gccccatcag tgttcccacc cggttttggg gaagtgctgg
     1501 tcttctttat gtcaaagata ccaggacctg gcgcctacaa tctgccctgc ctgctgccac
     1561 aagagtacat ctcacatttt gcaagcgagc aagcccccac tgtgggcgag gctgctctgc
     1621 tccattatgt tgaccctgat acagggcgga accttgggga gtttaaagca taccccgatg
     1681 gtttcctcac ttgtgtcccc aatggagcta gctcgggtcc acaacaatta ccaatcaatg
     1741 gggtttttgt ttttgtctct tgggtgtcta gattctatca attgaagcct gtgggaactg
     1801 ccagctcggc aagaggtagg cttggattgc gccgataatg gcccaagcta taattggtgc
     1861 aattgctgcc tccacagcag gtagtgccct cggggcag
//