Human calicivirus
Typing tool

Complete norovirus genomes

AY502010  GII.16
 GII.P16

Length: 1,990 | 3 CDS 

ORF1: 1..266
ORF2: 247..1869
ORF3: 1869..1990

LOCUS       AY502010                1990 bp    RNA     linear   VRL 26-JUL-2016
DEFINITION  Norovirus genogroup 2 strain Hu/NoV/Tiffin/1999/USA nonstructural
            polyprotein gene, partial cds; capsid protein gene, complete cds;
            and minor structural protein gene, partial cds.
ACCESSION   AY502010
VERSION     AY502010.1
KEYWORDS    .
SOURCE      Norovirus GII
  ORGANISM  Norovirus GII
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE   1  (bases 1 to 1990)
  AUTHORS   Zheng,D.P., Ando,T., Fankhauser,R.L., Beard,R.S., Glass,R.I. and
            Monroe,S.S.
  TITLE     Norovirus classification and proposed strain nomenclature
  JOURNAL   Virology 346 (2), 312-323 (2006)
   PUBMED   16343580
REFERENCE   2  (bases 1 to 1990)
  AUTHORS   Zheng,D.-P. and Monroe,S.S.
  TITLE     Systematic phylogeny clustering of Noroviruses
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 1990)
  AUTHORS   Zheng,D.-P. and Monroe,S.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-DEC-2003) Respiratory and Enteric Viruses Branch,
            Division of Viral and Rickettsial Diseases, Centers for Disease
            Control and Prevention, 1600 Clifton Rd, MS: G04, Atlanta, GA
            30333, USA
FEATURES             Location/Qualifiers
     source          1..1990
                     /organism="Norovirus GII"
                     /mol_type="genomic RNA"
                     /strain="Hu/NoV/Tiffin/1999/USA"
                     /host="Homo sapiens"
                     /db_xref="taxon:122929"
                     /geo_loc_name="USA"
                     /note="type: GII/16"
     CDS             <1..266
                     /note="ORF1"
                     /codon_start=3
                     /product="nonstructural polyprotein"
                     /protein_id="AAS86788.1"
                     /translation="EDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELK
                     EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             247..1869
                     /note="ORF2"
                     /codon_start=1
                     /product="capsid protein"
                     /protein_id="AAS86789.1"
                     /translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
                     NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEILLNLELGPELNPYLAHLARMYNGYAGG
                     VEVQVLLAGNAFTAGKLVFAAIPPHFPVDNLSPGQITMFPHVIIDVRTLEPVLLPLPD
                     VRNNFFHYNQQSDQRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
                     TVESKTKPFSVPVLTLNELTNSRFPVPIDAMYTSPNDSIVVQPQNGRATIDGELLGTT
                     QLIPSGICSFRGKITTHLSDDRHLWNIQVSNLNGTPFDPTDDVPAPLGMPDFSGQIFG
                     VVSQRDTGTNPANRAHDAVLATYSAKYTPKLGSVQIGTWDTEDLLERQPVKFTPVGLN
                     EIGQDKHFDQWVLPNYSGALGLNMHLAPAVSPLFPGERLLFFRSYIPLKGGHGDPFID
                     CLVPQEWIQHFYQESAPAQSSVALLRYVNPDTGRTLFEAKLHKEGFITVSSTENRPVI
                     VPPNGYFRFDSWVNQFYSLAPMGTGNGRRRMQ"
     CDS             1869..>1990
                     /note="ORF3"
                     /codon_start=1
                     /product="minor structural protein"
                     /protein_id="AAS86790.1"
                     /translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNQN"
ORIGIN      
        1 atgaagaccc caatgagaca atgatacccc actctcaaag acccatacag ctcatggcac
       61 tgcttggtga ggcctccctt cacggaccct ctttctacag caagattagt aaattggtca
      121 taaccgaact caaagaaggt gggatggact tttacgtgcc aagacaggaa cctatgttca
      181 ggtggatgag gttttctgac ttgagcacgt gggagggcga tcgcaatctg gctcccagtt
      241 ttgtgaatga agatggcgtc gaatgacgcc gctccatcta atgatggtgc agccggtctc
      301 gtaccagagg tcaacaacga gacaatggca cttgaaccag ttgcgggagc ttcaatcgct
      361 gcccctttaa ctggtcaaaa caatgtgata gacccctgga ttagattaaa ttttgtacaa
      421 gcccccaatg gtgagtttac ggtttccccc cgaaactcgc ctggtgaaat tttgttaaat
      481 ttggagttag ggcctgaatt gaatccatat ttagcccatt tagcaagaat gtataatggt
      541 tatgcaggtg gggttgaggt gcaggtactg ctggctggaa atgcgtttac agcgggcaaa
      601 ttggtattcg cagcaatccc cccccatttt ccagtagata atttgagccc cggtcagatt
      661 accatgtttc cccatgtgat tattgatgtt agaacacttg aacctgtttt gttaccatta
      721 cctgatgtta ggaataattt cttccattac aatcaacaga gtgatcagcg catgagactt
      781 gttgctatgc tttacacccc tcttagatct aatggttcag gtgatgatgt cttcactgtg
      841 tcatgcaggg ttttgaccag accatcccct gactttgatt ttaactattt ggttccccca
      901 acagttgaat ccaaaactaa acccttctca gtcccagtgc tgaccctcaa tgagctgacc
      961 aactctcgct ttcccgtccc gattgatgct atgtacacca gccctaacga ctcaattgtg
     1021 gtccaacctc agaatgggag ggcaaccata gacggtgagt tgcttggcac cactcaactc
     1081 atccccagtg gcatctgctc atttagagga aaaattacaa cacatttgtc agatgatagg
     1141 cacttgtgga atatccaagt ctccaacttg aatggcactc cgttcgaccc aacggacgac
     1201 gtgcctgcac cattgggtat gccagacttt tctgggcaaa tatttggggt ggttagtcaa
     1261 agggacacag gcaccaaccc cgcaaacaga gctcatgatg ctgttcttgc aacctacagt
     1321 gccaaataca ctcctaagct cggatcagtc caaattggaa cttgggacac cgaggattta
     1381 cttgaaagac agcctgttaa attcacgccc gttggtctca atgaaattgg acaagacaag
     1441 cactttgacc aatgggtgtt gccaaattat tccggtgccc taggactcaa catgcacctg
     1501 gctcctgctg tatccccact cttccccggg gagagactgc tgttctttag atcatacata
     1561 cctttaaaag gtggccatgg ggacccattt attgattgtc ttgtgcctca agaatggata
     1621 caacactttt atcaagagtc agccccagca caatcctcgg tggctctgct gaggtatgtg
     1681 aatccagaca caggtcgcac tctatttgag gccaaattac acaaggaagg gtttatcacc
     1741 gtctctagta cggaaaatag gcctgtgatt gtccccccaa atggttactt taggtttgat
     1801 tcttgggtta accaatttta ctcattagcc cccatgggaa ctggcaatgg gcgtagaagg
     1861 atgcagtaat ggctggagct tttatagcag gacttgctgg tgacattgtc accaacggca
     1921 ttggttcact tgtgaatgct ggagccaatg ctataaacca aaaagttgat tttgaaaaca
     1981 accaaaacag
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