Typing tool
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Complete norovirus genomes
AY502010 | GII.16 | ||
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GII.P16 |
ORF1: 1..266 ORF2: 247..1869 ORF3: 1869..1990LOCUS AY502010 1990 bp RNA linear VRL 26-JUL-2016 DEFINITION Norovirus genogroup 2 strain Hu/NoV/Tiffin/1999/USA nonstructural polyprotein gene, partial cds; capsid protein gene, complete cds; and minor structural protein gene, partial cds. ACCESSION AY502010 VERSION AY502010.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 1990) AUTHORS Zheng,D.P., Ando,T., Fankhauser,R.L., Beard,R.S., Glass,R.I. and Monroe,S.S. TITLE Norovirus classification and proposed strain nomenclature JOURNAL Virology 346 (2), 312-323 (2006) PUBMED 16343580 REFERENCE 2 (bases 1 to 1990) AUTHORS Zheng,D.-P. and Monroe,S.S. TITLE Systematic phylogeny clustering of Noroviruses JOURNAL Unpublished REFERENCE 3 (bases 1 to 1990) AUTHORS Zheng,D.-P. and Monroe,S.S. TITLE Direct Submission JOURNAL Submitted (11-DEC-2003) Respiratory and Enteric Viruses Branch, Division of Viral and Rickettsial Diseases, Centers for Disease Control and Prevention, 1600 Clifton Rd, MS: G04, Atlanta, GA 30333, USA FEATURES Location/Qualifiers source 1..1990 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Hu/NoV/Tiffin/1999/USA" /host="Homo sapiens" /db_xref="taxon:122929" /country="USA" /note="type: GII/16" CDS <1..266 /note="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="AAS86788.1" /translation="EDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELK EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 247..1869 /note="ORF2" /codon_start=1 /product="capsid protein" /protein_id="AAS86789.1" /translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEILLNLELGPELNPYLAHLARMYNGYAGG VEVQVLLAGNAFTAGKLVFAAIPPHFPVDNLSPGQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQQSDQRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP TVESKTKPFSVPVLTLNELTNSRFPVPIDAMYTSPNDSIVVQPQNGRATIDGELLGTT QLIPSGICSFRGKITTHLSDDRHLWNIQVSNLNGTPFDPTDDVPAPLGMPDFSGQIFG VVSQRDTGTNPANRAHDAVLATYSAKYTPKLGSVQIGTWDTEDLLERQPVKFTPVGLN EIGQDKHFDQWVLPNYSGALGLNMHLAPAVSPLFPGERLLFFRSYIPLKGGHGDPFID CLVPQEWIQHFYQESAPAQSSVALLRYVNPDTGRTLFEAKLHKEGFITVSSTENRPVI VPPNGYFRFDSWVNQFYSLAPMGTGNGRRRMQ" CDS 1869..>1990 /note="ORF3" /codon_start=1 /product="minor structural protein" /protein_id="AAS86790.1" /translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNQN" ORIGIN 1 atgaagaccc caatgagaca atgatacccc actctcaaag acccatacag ctcatggcac 61 tgcttggtga ggcctccctt cacggaccct ctttctacag caagattagt aaattggtca 121 taaccgaact caaagaaggt gggatggact tttacgtgcc aagacaggaa cctatgttca 181 ggtggatgag gttttctgac ttgagcacgt gggagggcga tcgcaatctg gctcccagtt 241 ttgtgaatga agatggcgtc gaatgacgcc gctccatcta atgatggtgc agccggtctc 301 gtaccagagg tcaacaacga gacaatggca cttgaaccag ttgcgggagc ttcaatcgct 361 gcccctttaa ctggtcaaaa caatgtgata gacccctgga ttagattaaa ttttgtacaa 421 gcccccaatg gtgagtttac ggtttccccc cgaaactcgc ctggtgaaat tttgttaaat 481 ttggagttag ggcctgaatt gaatccatat ttagcccatt tagcaagaat gtataatggt 541 tatgcaggtg gggttgaggt gcaggtactg ctggctggaa atgcgtttac agcgggcaaa 601 ttggtattcg cagcaatccc cccccatttt ccagtagata atttgagccc cggtcagatt 661 accatgtttc cccatgtgat tattgatgtt agaacacttg aacctgtttt gttaccatta 721 cctgatgtta ggaataattt cttccattac aatcaacaga gtgatcagcg catgagactt 781 gttgctatgc tttacacccc tcttagatct aatggttcag gtgatgatgt cttcactgtg 841 tcatgcaggg ttttgaccag accatcccct gactttgatt ttaactattt ggttccccca 901 acagttgaat ccaaaactaa acccttctca gtcccagtgc tgaccctcaa tgagctgacc 961 aactctcgct ttcccgtccc gattgatgct atgtacacca gccctaacga ctcaattgtg 1021 gtccaacctc agaatgggag ggcaaccata gacggtgagt tgcttggcac cactcaactc 1081 atccccagtg gcatctgctc atttagagga aaaattacaa cacatttgtc agatgatagg 1141 cacttgtgga atatccaagt ctccaacttg aatggcactc cgttcgaccc aacggacgac 1201 gtgcctgcac cattgggtat gccagacttt tctgggcaaa tatttggggt ggttagtcaa 1261 agggacacag gcaccaaccc cgcaaacaga gctcatgatg ctgttcttgc aacctacagt 1321 gccaaataca ctcctaagct cggatcagtc caaattggaa cttgggacac cgaggattta 1381 cttgaaagac agcctgttaa attcacgccc gttggtctca atgaaattgg acaagacaag 1441 cactttgacc aatgggtgtt gccaaattat tccggtgccc taggactcaa catgcacctg 1501 gctcctgctg tatccccact cttccccggg gagagactgc tgttctttag atcatacata 1561 cctttaaaag gtggccatgg ggacccattt attgattgtc ttgtgcctca agaatggata 1621 caacactttt atcaagagtc agccccagca caatcctcgg tggctctgct gaggtatgtg 1681 aatccagaca caggtcgcac tctatttgag gccaaattac acaaggaagg gtttatcacc 1741 gtctctagta cggaaaatag gcctgtgatt gtccccccaa atggttactt taggtttgat 1801 tcttgggtta accaatttta ctcattagcc cccatgggaa ctggcaatgg gcgtagaagg 1861 atgcagtaat ggctggagct tttatagcag gacttgctgg tgacattgtc accaacggca 1921 ttggttcact tgtgaatgct ggagccaatg ctataaacca aaaagttgat tttgaaaaca 1981 accaaaacag //