Typing tool
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Complete norovirus genomes
AY502009 | GII.17 | ||
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GII.P16 |
ORF1: 1..286 ORF2: 267..1889 ORF3: 1889..2009LOCUS AY502009 2009 bp RNA linear VRL 26-JUL-2016 DEFINITION Norovirus genogroup 2 strain Hu/NoV/CS-E1/2002/USA nonstructural polyprotein gene, partial cds; capsid protein gene, complete cds; and minor structural protein gene, partial cds. ACCESSION AY502009 VERSION AY502009.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 2009) AUTHORS Zheng,D.P., Ando,T., Fankhauser,R.L., Beard,R.S., Glass,R.I. and Monroe,S.S. TITLE Norovirus classification and proposed strain nomenclature JOURNAL Virology 346 (2), 312-323 (2006) PUBMED 16343580 REFERENCE 2 (bases 1 to 2009) AUTHORS Zheng,D.-P. and Monroe,S.S. TITLE Systematic phylogeny clustering of Noroviruses JOURNAL Unpublished REFERENCE 3 (bases 1 to 2009) AUTHORS Zheng,D.-P. and Monroe,S.S. TITLE Direct Submission JOURNAL Submitted (11-DEC-2003) Respiratory and Enteric Viruses Branch, Division of Viral and Rickettsial Diseases, Centers for Disease Control and Prevention, 1600 Clifton Rd, MS: G04, Atlanta, GA 30333, USA FEATURES Location/Qualifiers source 1..2009 /organism="Norovirus GII" /mol_type="genomic RNA" /strain="Hu/NoV/CS-E1/2002/USA" /host="Homo sapiens" /db_xref="taxon:122929" /country="USA" /note="type: GII/17" CDS <1..286 /note="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="AAS86785.1" /translation="WTRGPNHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISK LVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 267..1889 /note="ORF2" /codon_start=1 /product="capsid protein" /protein_id="AAS86786.1" /translation="MKMASNDAAPSNDGATGLVPEINNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYNNQPANRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTISELTNSRFPAPIDSLFTAQNNNLNVQCQNGRCTLDGELQGTT QLLPSGICAFRGRLTADVDGSHDDRWHMQLTNLNGTPFDPTEDVPAPLGTPDFTGLLF GVASQRNVGSNPNTTRAHEAVVSTTSSQFVPKLGSVNFGSTSTDFQLQQPTKFTPVGI KIESGHEFDQWALPRYSGHLTLNMNLAPPIAPNFPGEQLLFFRSNVPCAGGVSDGVID CLLPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRTGYITVAHSGDYPLV VPSNGYFRFDSWVNQFYSLAPMGTGNGRRRVQ" CDS 1889..>2009 /note="ORF3" /codon_start=1 /product="minor structural protein" /protein_id="AAS86787.1" /translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAITQKVDFENNKQ" ORIGIN 1 ttggacgcgt gggcctaacc atgaagaccc caatgaaaca atgatacccc actctcaaag 61 acccatacag ctcatggcac tgcttggtga ggcctctctt cacggaccct ctttctacag 121 caagattagt aaattggtca taactgaact caaagaaggt gggatggatt tttacgtgcc 181 aaggcaggaa cctatgttca ggtggatgag gttttctgac ttgagcacgt gggagggcga 241 tcgcaatctg gctcccagtt ttgtgaatga agatggcgtc gaatgacgcc gctccatcta 301 acgatggtgc tacgggcctc gtcccagaga tcaacaacga gaccctccct ttggaaccag 361 ttgcgggtgc agcaatcgcc gcgcctgtca ctggccaaaa taatataatt gatccctgga 421 ttagaacaaa ttttgtacaa gcacccaatg gagagttcac tgtctcacct agaaactccc 481 ctggagaaat tcttttaaat ttagaattgg gtcctgactt aaatccatat ttggcacatc 541 tatctagaat gtacaatggg tatgccggtg gcgtggaagt ccaagtcctc ctagcaggga 601 acgcgttcac tgcagggaag atcctcttcg ctgccgtgcc accaaatttc ccagttgaat 661 tcttgagtcc tgcacagatt actatgttgc cacacctaat agttgatgtt agaacccttg 721 aacccatcat gataccactc cctgatgtta ggaacacctt ctttcattac aacaatcaac 781 ccgccaaccg catgcgattg gtggctatgt tgtatacccc tttgagatct aatggttctg 841 gtgatgatgt cttcactgtt tcatgtagag tgctaactag gcccacccca gattttgagt 901 tcacatactt ggtccctcct tcagtagagt ctaagactaa acccttttct ctgcctatat 961 taacaatatc tgaattaacc aattcaagat ttcctgcacc catagattca ttgtttacag 1021 cccagaataa caatctcaat gtccaatgtc agaatggtcg gtgcacactg gatggtgagt 1081 tgcagggaac cactcaactg ctgccctcgg gtatatgtgc tttcaggggg agactaacag 1141 cagatgtaga cggaagccac gatgacagat ggcacatgca gttgaccaac ctcaatggaa 1201 ccccctttga tccaacagag gacgtgccgg ctccgttagg caccccagac ttcacaggcc 1261 tcctcttcgg agtggcaagt cagaggaatg ttgggtccaa cccaaacacc actagggcgc 1321 acgaggctgt ggtctccaca accagttcac agtttgtgcc aaaattagga tcagtcaact 1381 ttggtagtac tagcactgac ttccaactac aacaacccac caaattcaca ccagttggaa 1441 tcaagattga aagtggacac gaatttgatc agtgggccct acctagatac tcaggtcact 1501 tgaccctcaa tatgaacctt gccccaccta ttgccccaaa tttccctggt gagcagttgt 1561 tgttctttag atcaaatgtt ccttgtgctg gtggcgtcag tgatggtgtc atcgattgct 1621 tgttgcctca ggagtggata cagcacttct atcaggagtc tgctccatcc cagtctgatg 1681 tggctctgat caggtatgtc aaccctgaca ctggccgcac actcttcgag gcgaaactcc 1741 acagaacagg ctacatcact gttgcccact caggtgatta tcccctcgtt gtcccctcca 1801 atggatattt tagatttgat tcctgggtca accagtttta ctcactcgcc cccatgggaa 1861 caggaaatgg gcgcagacgg gtgcagtaat ggcaggagct ttcatagcag gtcttgcagg 1921 tgacatgctc accaacacag ttggctccct agtgaatgct ggggccaatg ctataaccca 1981 aaaggtggat tttgaaaaca acaaacaga //