Human calicivirus
Typing tool

Complete norovirus genomes

AY502009  GII.17
 GII.P16

Length: 2,9 | 3 CDS 

ORF1: 1..286
ORF2: 267..1889
ORF3: 1889..2009

LOCUS       AY502009                2009 bp    RNA     linear   VRL 26-JUL-2016
DEFINITION  Norovirus genogroup 2 strain Hu/NoV/CS-E1/2002/USA nonstructural
            polyprotein gene, partial cds; capsid protein gene, complete cds;
            and minor structural protein gene, partial cds.
ACCESSION   AY502009
VERSION     AY502009.1
KEYWORDS    .
SOURCE      Norovirus GII
  ORGANISM  Norovirus GII
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE   1  (bases 1 to 2009)
  AUTHORS   Zheng,D.P., Ando,T., Fankhauser,R.L., Beard,R.S., Glass,R.I. and
            Monroe,S.S.
  TITLE     Norovirus classification and proposed strain nomenclature
  JOURNAL   Virology 346 (2), 312-323 (2006)
   PUBMED   16343580
REFERENCE   2  (bases 1 to 2009)
  AUTHORS   Zheng,D.-P. and Monroe,S.S.
  TITLE     Systematic phylogeny clustering of Noroviruses
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 2009)
  AUTHORS   Zheng,D.-P. and Monroe,S.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-DEC-2003) Respiratory and Enteric Viruses Branch,
            Division of Viral and Rickettsial Diseases, Centers for Disease
            Control and Prevention, 1600 Clifton Rd, MS: G04, Atlanta, GA
            30333, USA
FEATURES             Location/Qualifiers
     source          1..2009
                     /organism="Norovirus GII"
                     /mol_type="genomic RNA"
                     /strain="Hu/NoV/CS-E1/2002/USA"
                     /host="Homo sapiens"
                     /db_xref="taxon:122929"
                     /geo_loc_name="USA"
                     /note="type: GII/17"
     CDS             <1..286
                     /note="ORF1"
                     /codon_start=2
                     /product="nonstructural polyprotein"
                     /protein_id="AAS86785.1"
                     /translation="WTRGPNHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISK
                     LVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             267..1889
                     /note="ORF2"
                     /codon_start=1
                     /product="capsid protein"
                     /protein_id="AAS86786.1"
                     /translation="MKMASNDAAPSNDGATGLVPEINNETLPLEPVAGAAIAAPVTGQ
                     NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
                     VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
                     VRNTFFHYNNQPANRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
                     SVESKTKPFSLPILTISELTNSRFPAPIDSLFTAQNNNLNVQCQNGRCTLDGELQGTT
                     QLLPSGICAFRGRLTADVDGSHDDRWHMQLTNLNGTPFDPTEDVPAPLGTPDFTGLLF
                     GVASQRNVGSNPNTTRAHEAVVSTTSSQFVPKLGSVNFGSTSTDFQLQQPTKFTPVGI
                     KIESGHEFDQWALPRYSGHLTLNMNLAPPIAPNFPGEQLLFFRSNVPCAGGVSDGVID
                     CLLPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRTGYITVAHSGDYPLV
                     VPSNGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
     CDS             1889..>2009
                     /note="ORF3"
                     /codon_start=1
                     /product="minor structural protein"
                     /protein_id="AAS86787.1"
                     /translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAITQKVDFENNKQ"
ORIGIN      
        1 ttggacgcgt gggcctaacc atgaagaccc caatgaaaca atgatacccc actctcaaag
       61 acccatacag ctcatggcac tgcttggtga ggcctctctt cacggaccct ctttctacag
      121 caagattagt aaattggtca taactgaact caaagaaggt gggatggatt tttacgtgcc
      181 aaggcaggaa cctatgttca ggtggatgag gttttctgac ttgagcacgt gggagggcga
      241 tcgcaatctg gctcccagtt ttgtgaatga agatggcgtc gaatgacgcc gctccatcta
      301 acgatggtgc tacgggcctc gtcccagaga tcaacaacga gaccctccct ttggaaccag
      361 ttgcgggtgc agcaatcgcc gcgcctgtca ctggccaaaa taatataatt gatccctgga
      421 ttagaacaaa ttttgtacaa gcacccaatg gagagttcac tgtctcacct agaaactccc
      481 ctggagaaat tcttttaaat ttagaattgg gtcctgactt aaatccatat ttggcacatc
      541 tatctagaat gtacaatggg tatgccggtg gcgtggaagt ccaagtcctc ctagcaggga
      601 acgcgttcac tgcagggaag atcctcttcg ctgccgtgcc accaaatttc ccagttgaat
      661 tcttgagtcc tgcacagatt actatgttgc cacacctaat agttgatgtt agaacccttg
      721 aacccatcat gataccactc cctgatgtta ggaacacctt ctttcattac aacaatcaac
      781 ccgccaaccg catgcgattg gtggctatgt tgtatacccc tttgagatct aatggttctg
      841 gtgatgatgt cttcactgtt tcatgtagag tgctaactag gcccacccca gattttgagt
      901 tcacatactt ggtccctcct tcagtagagt ctaagactaa acccttttct ctgcctatat
      961 taacaatatc tgaattaacc aattcaagat ttcctgcacc catagattca ttgtttacag
     1021 cccagaataa caatctcaat gtccaatgtc agaatggtcg gtgcacactg gatggtgagt
     1081 tgcagggaac cactcaactg ctgccctcgg gtatatgtgc tttcaggggg agactaacag
     1141 cagatgtaga cggaagccac gatgacagat ggcacatgca gttgaccaac ctcaatggaa
     1201 ccccctttga tccaacagag gacgtgccgg ctccgttagg caccccagac ttcacaggcc
     1261 tcctcttcgg agtggcaagt cagaggaatg ttgggtccaa cccaaacacc actagggcgc
     1321 acgaggctgt ggtctccaca accagttcac agtttgtgcc aaaattagga tcagtcaact
     1381 ttggtagtac tagcactgac ttccaactac aacaacccac caaattcaca ccagttggaa
     1441 tcaagattga aagtggacac gaatttgatc agtgggccct acctagatac tcaggtcact
     1501 tgaccctcaa tatgaacctt gccccaccta ttgccccaaa tttccctggt gagcagttgt
     1561 tgttctttag atcaaatgtt ccttgtgctg gtggcgtcag tgatggtgtc atcgattgct
     1621 tgttgcctca ggagtggata cagcacttct atcaggagtc tgctccatcc cagtctgatg
     1681 tggctctgat caggtatgtc aaccctgaca ctggccgcac actcttcgag gcgaaactcc
     1741 acagaacagg ctacatcact gttgcccact caggtgatta tcccctcgtt gtcccctcca
     1801 atggatattt tagatttgat tcctgggtca accagtttta ctcactcgcc cccatgggaa
     1861 caggaaatgg gcgcagacgg gtgcagtaat ggcaggagct ttcatagcag gtcttgcagg
     1921 tgacatgctc accaacacag ttggctccct agtgaatgct ggggccaatg ctataaccca
     1981 aaaggtggat tttgaaaaca acaaacaga
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