Typing tool
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Typing tool
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Complete norovirus genomes
| AY502008 | GI.6 | |
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| GI.PNA4 |
ORF1: 1..284
ORF2: 268..1890
ORF3: 1890..2242
LOCUS AY502008 2242 bp RNA linear VRL 26-JUL-2016
DEFINITION Norovirus genogroup 1 strain Hu/NoV/Wisconsin/2001/USA
nonstructural polyprotein gene, partial cds; capsid protein gene,
complete cds; and minor structural protein gene, partial cds.
ACCESSION AY502008
VERSION AY502008.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 2242)
AUTHORS Zheng,D.P., Ando,T., Fankhauser,R.L., Beard,R.S., Glass,R.I. and
Monroe,S.S.
TITLE Norovirus classification and proposed strain nomenclature
JOURNAL Virology 346 (2), 312-323 (2006)
PUBMED 16343580
REFERENCE 2 (bases 1 to 2242)
AUTHORS Zheng,D.-P. and Monroe,S.S.
TITLE Systematic phylogeny clustering of Noroviruses
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2242)
AUTHORS Zheng,D.-P. and Monroe,S.S.
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2003) Respiratory and Enteric Viruses Branch,
Division of Viral and Rickettsial Diseases, Centers for Disease
Control and Prevention, 1600 Clifton Rd, MS: G04, Atlanta, GA
30333, USA
FEATURES Location/Qualifiers
source 1..2242
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="Hu/NoV/Wisconsin/2001/USA"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA"
/note="type: GI/6"
CDS <1..284
/note="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="AAS86782.1"
/translation="WTRGPNHDDPSETLIPHPQRKVQLISLLGEASLHGEKFYRKIAS
RVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
CDS 268..1890
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="AAS86783.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLFHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNVPLKDLSNSRVPVPIQGMFMSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGSPFIPLESPAPVGFPDLGGCDWHV
NFTFQAQDQDPSQSVTFATNDASFVPYLGSISPHNGGDFHSGDIIGSLGWISAPSDSS
QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQPVQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASVARRLGLRRI"
CDS 1890..>2242
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="AAS86784.1"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDREMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPTSSATTLRSG"
ORIGIN
1 tttggacgcg tgggcctaat catgatgacc ctagtgagac cctaatacca cacccacaaa
61 ggaaagtaca actcatctca ctccttggtg aagcatcact ccatggggaa aagttctaca
121 gaaagatagc cagcagagtc attcaagaaa ttaagacggg gggcttggaa atgtatgtgc
181 caggttggca ggccatgttc cgctggatgc gtttccatga ccttgggctt tggacagggg
241 atcgcaatct gctgcccgaa ttcgtgaatg atgatggcgt ctaaggacgc cccaacatcc
301 cctgatggcg ctagtggcgc cggccagctg gtaccggagg ctaatacagc tgagcaaatt
361 tcaatggacc ctgttgcggg tgcttcaaca gcagtcgcaa cggctggaca agttaatatg
421 attgacccat ggatttttaa caactttgtc caggcacccc aaggagaatt cactatttcc
481 cctaataata cccccggtga tatcttgttt gatctacagt tagggcccca ccttaaccca
541 tttttggctc atctttcgca gatgtacaat ggatgggttg gcaatatgcg tgtacgtata
601 ttgctggcag ggaatgcttt tacagctgga aagataatta tctgctgtgt tccccctggt
661 tttgatgcta gaatactcac aattgctcag gcaactcttt tcccacacct gatcgctgat
721 gttaggactc ttgagcccgt ggaactccct ctggaggacg tgcgcaacgt tctctttcac
781 aatagcagcc agccgcaacc aacaatgcga ttggtggcta tgttgtacac cccactccgc
841 acgggcggtg gctctggagg cactgatgcc tttgtggtgg caggtagggt acttacgtgc
901 cctgcccctg actttagctt tttgtttctt gtccctcctt ctgtcgagca aaagaccagg
961 gtgttcagtg tccctaatgt acctctgaaa gacctttcaa attctcgtgt ccctgtgcct
1021 atacagggta tgtttatgtc cccagatgtc aaccagtcag tccagtttca gaatgggcgc
1081 tgtcagattg atggccagct ccagggcacc acccctgtct cgctcagcca gctttgcaag
1141 atcaggggta agacctcgag caatgccaga gtgctcaatc tcagtgaggt agatggttca
1201 cctttcatcc ccctcgaatc gccagcacca gttggctttc ccgacctggg aggctgcgac
1261 tggcatgtga attttacttt ccaagctcag gatcaggacc catctcaaag tgtgaccttt
1321 gcaaccaatg atgctagctt tgttccatac ctaggcagta tctctcccca caacggggga
1381 gattttcatt caggtgacat cataggtagc cttggctgga tttctgcccc gtccgacagt
1441 tcccaactca atgtctggac aataccgaag tacggctcca gcctcccaga tgtaacccac
1501 cttgcacctg ctgtgtttcc cccaggtttt ggggaggtca tcttgtactt ctactccact
1561 tttccaggtt ctggccaacc agtacaactc caagtcccat gtctattacc tcaggagttt
1621 atcactcact tttgcaatga acaggccccc attgctgggg aggctgccct cctccattat
1681 gtggatcctg atacagggcg aaacttgggg gagttcaagc tttaccccga tggattcatg
1741 acctgtgtcc ctaatagtgt tagtagtggc cctcaaactc tccccatcaa tggagtcttt
1801 gtctttgttt catgggtgtc tagattctat caacttaagc ctgtgggaac ggcctcagtg
1861 gccagaaggc ttggactacg gcgcatataa tggctcaagc tgtcatcgga gccattgccg
1921 cctctgccgc cggcagcata ctcggggcag gcatacaggc tggcgctgag gccggcctcc
1981 aggcccaacg atatcaacag gacctacagt tgcagcaaaa ttcttttaag catgataggg
2041 aaatgttagg ttaccaggtc caggctagta atgctcttct ggctaagaat cttaacacta
2101 gatatgccct tctgcaggca gggggcctgt ctagtgctga tgctgctcgg gcagtagctg
2161 gtgctcctgt cacccgtata gtggactgga atggcacacg gattgcagcg ccaacttcaa
2221 gtgccacaac attaagatct gg
//