Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| AY502007 | GI.6 | |
|
|---|---|---|---|
| GI.PNA1 |
ORF1: 1..262
ORF2: 246..1868
ORF3: 1868..2146
LOCUS AY502007 2146 bp RNA linear VRL 26-JUL-2016
DEFINITION Norovirus genogroup 1 strain Hu/NoV/CS-841/2001/USA nonstructural
polyprotein gene, partial cds; capsid protein gene, complete cds;
and minor structural protein gene, partial cds.
ACCESSION AY502007
VERSION AY502007.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 2146)
AUTHORS Zheng,D.P., Ando,T., Fankhauser,R.L., Beard,R.S., Glass,R.I. and
Monroe,S.S.
TITLE Norovirus classification and proposed strain nomenclature
JOURNAL Virology 346 (2), 312-323 (2006)
PUBMED 16343580
REFERENCE 2 (bases 1 to 2146)
AUTHORS Zheng,D.-P. and Monroe,S.S.
TITLE Systematic phylogeny clustering of Noroviruses
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 2146)
AUTHORS Zheng,D.-P. and Monroe,S.S.
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2003) Respiratory and Enteric Viruses Branch,
Division of Viral and Rickettsial Diseases, Centers for Disease
Control and Prevention, 1600 Clifton Rd, MS: G04, Atlanta, GA
30333, USA
FEATURES Location/Qualifiers
source 1..2146
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="Hu/NoV/CS-841/2001/USA"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA"
/note="type: GI/6"
CDS <1..262
/note="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="AAS86779.1"
/translation="SDPFETLVPHQQRKVQLISLLGEASLHGEKFYRKISSKVIQEIK
TGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
CDS 246..1868
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="AAS86780.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLYHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPIQGMFMSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFVPLESPAPVGFPDLGGCDWHV
NFTFQAQNQDPSQSVTFATNDASFVPYLGSISPHNGGDFHAGDIIGSLGWISAPSDNT
QLNVWTIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQPSQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
CDS 1868..>2146
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="AAS86781.1"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDREMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAP"
ORIGIN
1 ctcagaccct tttgaaacct tagtgcccca ccagcaaaga aaagtccaat tgatatcact
61 gctgggtgag gcctcattgc atggtgaaaa attctacaga aagatttcaa gcaaagtcat
121 ccaagagatt aaaacagggg gccttgaaat gtatgtacca gggtggcaag ctatgttccg
181 ctggatgcgc ttccatgatc ttggtctgtg gacaggagat cgcaatctcc tacccgaatt
241 tgtaaatgat gatggcgtct aaggacgccc caacatcccc tgatggcgcc agtggcgctg
301 gccagctggt accggaggct aacacagctg agcaaatttc aatggaccct gttgcgggtg
361 cttcaacagc agtcgcaaca gctgggcaag ttaatatgat tgacccatgg attttcaata
421 actttgtcca ggcgccccaa ggagaattta ctatctcccc taataatacc cccggtgaca
481 ttttgtttga cttacaatta ggaccccacc ttaatccatt tctagcccac ctctcacaaa
541 tgtataatgg ttgggtcggc aatatgcgtg tacgtatatt gctggcaggg aatgctttca
601 cagctggcaa gataatcatt tgctgtgtcc cccctggttt tgatgctaga atacttacaa
661 tagcccaagc aactctcttt ccacacttga ttgctgatgt taggactctt gagcctgtgg
721 agctccctct ggaggacgtg cgcaacgttc tctatcacaa cagtagccag ccgcagccaa
781 caatgcggtt ggtggctatg ttgtacactc ccctccgcac tggtggtggc tccggaggta
841 ctgatgcctt tgtggttgcg ggcagggtgc tcacgtgccc cgcccctgat tttagctttc
901 tgtttcttgt ccccccctcc gttgagcaga agactagggt ttttagtgtc cccaacatac
961 ccctaaaaga cctttcaaat tctcgtgttc ctgtgcctat acagggcatg ttcatgtccc
1021 cagatgtcaa tcagtcagtc cagtttcaga acgggcgctg ccaaatcgat ggtcaactcc
1081 aaggcactac ccctgtttcg ctcagtcaac tttgcaagat taggggtaag acttcaagca
1141 atgccagagt actcaactta agtgaggtgg atggcacacc ctttgttcct cttgagtctc
1201 cagcaccagt tggttttccc gacttaggag gttgtgactg gcatgtaaac ttcactttcc
1261 aggctcagaa tcaggaccca tctcaaagtg tgacctttgc aactaatgat gctagctttg
1321 ttccctactt aggcagcatc tctcctcaca atggggggga ttttcatgca ggtgacatca
1381 taggcagtct tggctggatt tcagccccgt ctgataatac acaacttaat gtctggacaa
1441 taccaaagta tgggtccagt ctcccagatg tcactcacct tgcacctgct gtgttccccc
1501 caggctttgg ggaggtgatt ctgtacttct actctacatt cccaggttct ggacaaccta
1561 gtcagcttca agtcccatgc ctgttgcctc aggagttcat cacccacttc tgcaatgaac
1621 aggctcccat cgctggggaa gctgctctcc tccattacgt ggaccctgac acggggcgga
1681 acctggggga attcaagctc tatcctgatg ggtttatgac ctgtgtcccc aatagtgtta
1741 gcagtggtcc tcaaaccctt cctatcaatg gagtctttgt ctttgtttca tgggtatcca
1801 gattttatca actcaagcct gtgggaacgg cctcagcggc tagaaggctt ggactgcggc
1861 gtatataatg gcccaagctg tcatcggagc catagccgca tctgccgctg gtagtatact
1921 gggggcaggc atacaggctg gtgctgaggc tggtctccag gctcaacggt accagcaaga
1981 cttgcaatta caacaaaatt ccttcaagca tgatagggaa atgttaggtt atcaggttca
2041 ggctagtaat gctcttttag ctaagaatct taacactaga tatgctcttc tgcaggcagg
2101 gggcctgtct agtgctgatg ctgctcgggc agtggctggt gctcct
//