Typing tool
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Typing tool
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Complete norovirus genomes
| AY134748 | GII.2 | |
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| GII.P30 |
ORF1: 5..5104
ORF2: 5085..6713
ORF3: 6713..7492
LOCUS AY134748 7537 bp RNA linear VRL 01-JUL-2004
DEFINITION Snow Mountain virus, complete genome.
ACCESSION AY134748
VERSION AY134748.1
KEYWORDS .
SOURCE Snow Mountain virus
ORGANISM Snow Mountain virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7537)
AUTHORS Lochridge,V.P. and Hardy,M.E.
TITLE Snow Mountain virus genome sequence and virus-like particle
assembly
JOURNAL Virus Genes 26 (1), 71-82 (2003)
PUBMED 12680695
REFERENCE 2 (bases 1 to 7537)
AUTHORS Lochridge,V.P. and Hardy,M.E.
TITLE Direct Submission
JOURNAL Submitted (22-JUL-2002) Veterinary Molecular Biology, Montana State
University, P.O. Box 173610, Bozeman, MT 59717, USA
FEATURES Location/Qualifiers
source 1..7537
/organism="Snow Mountain virus"
/mol_type="genomic RNA"
/host="Homo sapiens"
/db_xref="taxon:52276"
/note="genogroup 2;
serogroup: 3"
gene 5..5104
/gene="ORF1"
CDS 5..5104
/gene="ORF1"
/note="SMV nonstructural proteins"
/codon_start=1
/product="polyprotein"
/protein_id="AAN08111.1"
/translation="MKMASNDASAAAAVNSNNDNAKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEPVVHYSAKDGITGLPELTTVRQPE
EAATAFSVPPLDQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLYWRPVYTPQYLIAPDTLRKLHGELFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANILLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRTCKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRLRPVVVMISGKPGIGKTHLAREL
AKKIAITLSGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPVHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDVEK
AKRDFPGQPDMWKSAYSPDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPNLTTFNFDRNKIQAFRQLAAENKYGLVDTMRVGGQLKGVRTI
PELKQALKNILIKRCQIVYGGSTYTLESDGKGNVKVEKVQNTNIQINNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQNLWSRPPVGDAEEVTSQDGC
PKPKDDEEFVISSSDITPEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDERVVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGTQEFFGVPIKQIQIHKSGEFCRLRFPKSIRTAVTGMILEEGAPEG
TVVSLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGNAPKLSTKTKFWRSSTVPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWSFSQACASLDKTTSSGHPHHIRKNDCW
NGESFTGKLADQASKANLMYEEGKNMTPVYTGALKDELVKTDKIYGQIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRFSYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLAPSVMDVGDFKITINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLAPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQIYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPTFYTKISKLVITELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5085..6713
/gene="ORF2"
CDS 5085..6713
/gene="ORF2"
/note="major capsid protein; VP1"
/codon_start=1
/product="viral protein 1"
/protein_id="AAN08112.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLQDNDHLYNITITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
VITQRDKQNAAGQSQPANRGHDAVVPTYTAQYTPKLGQVQIGTWQTDDLKVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYLPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ"
gene 6713..7492
/gene="ORF3"
CDS 6713..7492
/gene="ORF3"
/note="minor structural protein; VP2"
/codon_start=1
/product="viral protein 2"
/protein_id="AAN08113.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPTDAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGRFTSTAPARQADLQHTQNRPSSGSSVSSYATQSSRPTLTTTT
GSSHSTTSSNSTRSTNLSQSTVSRAASRTSEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgtcaaca gcaacaacga
61 caacgcaaaa tcttcaagtg acggagtact atctagtatg gctgtcactt ttaaacgagc
121 ccttggggcc cggcctaaac agccgccccc gagggaaata ccacaaaggc ccccaaggcc
181 acccacccca gaactggtga aaaagatccc acctcccccg cccaacggag aagacgaacc
241 ggtcgttcat tatagtgcta aagatggcat aactgggctg cccgaactta caacagtgag
301 gcagccagaa gaggccgcta cagcattcag cgtcccaccc ctcgaccaga gagagaatag
361 ggacgctaaa gagccattga ccggcaccat cttggagatg tgggatggcg agatttacca
421 ttatggccta tatgtggagc gagggctggt gcttggcgtg cacaaaccac cagccgccat
481 cagcctcgct aaagttgagt taacacctct atctttgtat tggagaccag tgtacacccc
541 ccagtacctc atcgctcctg acaccctcag gaaactgcac ggggagttat ttccatacac
601 ggcctttgat aacaactgct atgccttctg ctgctgggtg ttggacttaa acgattcttg
661 gttgagcaga aggatgatac agagaacaac tggctttttc aggccttacc aagattggaa
721 taggaagccc ctccccacca tggatgactc caagttgaag aaggtggcca acatactttt
781 gtgtgccttg tcatcactat tcactagacc catcaaggac ataattggga aactcaggcc
841 tctcaatatc cttaacatcc tggcttcttg tgattggact ttcgcaggta tagtggaatc
901 tctaattctc ctagctgaac tcttcggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttactgggtg actacgagct gcaaggaccc gaagatcttg ctgtggaact
1021 tgtaccgata gtaatggggg ggataggatt ggtgttgggg ttcaccaagg aaaagattgg
1081 gaagatgctg tcatctgccg cttccaccct gaggacctgc aaagaccttg gcgcctatgg
1141 gctggaaatt ctgaaactgg tcatgaaatg gtttttccca aagaaagaag aggcaaacga
1201 gcttgcgatg gtgagggcta ttgaggacgc agtcctagat ctcgaggcta ttgagaacaa
1261 ccatatgaca gctctactca aagacaaaga tagcctcgcg acatacatga ggactcttga
1321 tttggaggaa gaaaaggcca gaaagctctc cactaagtcc gcttcacctg atatagtggg
1381 cacgatcaac gccctgctgg ctagaattgc cgctgctcgt tcccttgtac acagggccaa
1441 ggaagaactg tccagcaggc taaggccagt tgttgtgatg atatctggca aacctggcat
1501 cgggaagacc catctggcta gagaattggc aaagaagatc gctataaccc tttcaggaga
1561 ccagagggta ggcctcatcc cccgcaacgg agtcgaccac tgggatgctt acaagggtga
1621 gagagtcgtt ctctgggacg attatgggat gagtaacccc gtccatgatg ccctaagact
1681 ccaagaactt gctgacacct gccctttgac cctaaactgt gacagaattg agaacaaggg
1741 caaggtcttt gacagtgatg ccataatcat cacaaccaac ctggctaacc cagctccact
1801 tgattatgtc aactttgaag cttgctccag gcgcattgac ttccttgtgt atgccgatgc
1861 acctgacgtt gagaaagcga agcgcgactt cccgggacaa cctgacatgt ggaagagcgc
1921 ttatagtccc gacttctcac acatcaagct aatgctggct ccccagggtg gttttgacaa
1981 aaatggcaac accccacacg ggaaaggtgt catgaagacc ctcacaacag gctccctcat
2041 tgcccgtgct tcagggctcc tccatgaacg attggatgaa ttcgaactac aaggacccaa
2101 cctcacaact ttcaactttg accgtaataa aatacaggct tttaggcagc ttgccgctga
2161 aaacaaatat ggcctggtgg acacaatgag agtgggtgga caactcaagg gtgtcagaac
2221 tataccagaa ctcaagcagg ccctcaagaa catattaatc aaaaggtgcc agatagtgta
2281 tggtggcagc acctatacac ttgaatctga tggcaaaggg aatgtgaaag tggaaaaagt
2341 gcaaaatacc aacatccaaa tcaacaacga gctagctggt gctttacacc acctccgatg
2401 cgctaggatc aggtactatg ttaaatgtgt tcaggaggct ctatattcca tcatccaaat
2461 tgctggggcc gcgtttgtaa ccacgcgcat tgtgaagcgc atgaacatac aaaacttgtg
2521 gtcaaggcct ccagtaggag atgcggagga ggtcactagc caggatggtt gcccaaagcc
2581 caaagatgat gaggagttcg tcatctcgtc tagtgacatc acgcctgaag gcaagaaagg
2641 aaagaacaag actggccgcg gcaagaaaca cacagccttc tcgagcaagg gtctcagtga
2701 tgaggagtac gatgagtaca aaagaatcag ggaagaaagg aatggtaagt actccataga
2761 agaatacctt caggacagag acaagtatta tgaggaagtg gccatagcca gggcaactga
2821 ggaagacttc tgtgaggaag aagaagccaa gatccgacag aggatattta ggccaacgag
2881 gaagcaacgc aaggaggaga gggcttccct tggccttgtc actggctcag agatcagaaa
2941 gagaaaccca gacgacttca aacctaaagg aaagctgtgg gctgatgatg aaagggtcgt
3001 tgactataat gagaaactca gttttgaggc ccccccgagc atctggtcaa ggatagtcaa
3061 ctttgggtca ggatgggggt tctgggtgtc ccctagcctg tttattacat caacccatgt
3121 tataccccaa ggcactcagg aattctttgg tgtacccatc aagcagattc agattcacaa
3181 atcaggggag ttctgccgcc tgagattccc taaatcaatc agaactgctg taacaggcat
3241 gatcctagaa gagggggccc cagaaggaac cgtggtctca ctactcatca agagaccaac
3301 cggtgagctc atgcccctgg cagccagaat gggcacccat gcgactatga aaatccaagg
3361 tcgcacggtt ggaggtcaga tgggtatgtt gctaacaggg tccaatgcta aaagcatgga
3421 tttgggcacg acacctggtg actgtggctg cccctatatt tataagagag gcaatgacta
3481 cgtggtcatc ggcgtgcaca cagccgctgc tcgcggaggt aacactgtca tctgtgcaac
3541 ccagggcagt gaaggtgagg ccacgctcga aggcggtgat aacaaaggca cctactgtgg
3601 agctccaata ctaggccctg gtaacgctcc caagctcagc accaagacta aattctggag
3661 gtcctccaca gtgccactcc cacccgggac ctatgaacca gcttacttag gtggcaagga
3721 ccccagggtg aagggtggac cttcactaca acaagtcatg agagaccagc taaaaccatt
3781 cactgagcct aggggcaaac cacccaagcc aagtgtgctg gaagctgcca agaagaccat
3841 tatcaatgtg ttggagcaaa caatagatcc cccccaaaaa tggtcatttt cacaagcatg
3901 tgcgtcgctt gataaaacca cctccagcgg ccacccccac cacatacgga agaacgattg
3961 ctggaatggg gagtctttta caggaaaatt ggcagatcaa gcatcaaaag ctaacctaat
4021 gtatgaggaa ggaaagaaca tgaccccagt ctacacaggg gccctcaagg atgagctggt
4081 caagactgac aagatctatg ggcagatcaa gaaaaggctt ctttggggct ctgacttggc
4141 aacaatgatc cgttgtgcgc gggcgtttgg agggttaatg gatgagctca aggcccattg
4201 cgtaacactc cctgtcaggg ttgggatgaa catgaatgag gatggaccca taatttttga
4261 aaagcactcc aggttctcat accactatga tgcagattac tcacgctggg actcaaccca
4321 acagagggca gtgctagctg cagccttgga aatcatggta aaattctcac cagaaccaca
4381 tttggcccaa attgttgcag aggatctcct agcccccagt gtgatggatg taggtgattt
4441 caaaataaca attaatgagg gactgccctc gggagtaccc tgcacatcac agtggaattc
4501 catcgcccac tggctcctca cactctgcgc actatctgaa gtcacaaacc tggctcctga
4561 catcatacaa gctaactcct tgttctcttt ctatggtgat gatgaaatcg taagtactga
4621 cataaaatta gacccagaga aactcacagc aaaactcaaa gaatacggac tcaaaccaac
4681 ccgcccggac aaaactgaag gacccctgat catatccgag gacttgaatg gtttgacctt
4741 tctgcggcgg accgtgaccc gtgatccagc tgggtggttt ggcaagttgg accagagttc
4801 aattctcagg cagatatact ggactagggg ccccaaccat gaggacccgt ccgaaacaat
4861 gataccacac tcccagaggc ctatacagct gatgtctctt ttgggtgaag cagccttgca
4921 tggtccaaca ttttacacca aaatcagtaa actggtcatc acagagctga aggaaggtgg
4981 catggatttt tacgtgccca gacaggaacc catgttcagg tggatgagat tctcagattt
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccgc tccatctact gatggtgcag ccggcctcgt gccagaaagt aataatgagg
5161 tcatggctct tgagcccgtg gctggtgctg ccttggcagc cccggtcacc ggtcaaacaa
5221 atattataga cccttggatt agagcaaatt ttgtccaggc ccctaatggt gaatttacag
5281 tttctccccg taatgcccct ggtgaagtgc tattaaatct agaattgggt ccagaattaa
5341 atccttatct ggcacattta gcaagaatgt acaacgggta tgccggtggg atggaggtgc
5401 aggtcatgct agctgggaac gcgttcacag ctggcaaatt ggtcttcgct gctgtaccac
5461 ctcatttccc ggttgaaaac cttagtccac agcaaattac catgttccct catgtgatta
5521 tagatgttag gactttggaa cctgttttat tgccactccc cgatgttaga aataatttct
5581 tccattataa tcaaaaagat gatcctaaga tgagaattgt ggctatgctt tatactcccc
5641 tcaggtccaa tggttctggt gatgatgtgt tcacagtctc ttgcagggtg ttgactagac
5701 cctcccctga ttttgatttt acatacctgg taccaccaac agtggaatcc aaaacaaaac
5761 cattcaccct tccaattctt acacttgggg agctttccaa ttctagattt ccagtgtcca
5821 tagatcagat gtacactagc cccaatgaag tcatatctgt gcagtgccag aatggaaggt
5881 gcacactgga tggggagctc caaggaacaa cacagctcca agttagtggc atttgtgcat
5941 tcaaaggaga agtgaccgct cacttgcagg acaatgatca cctatacaac atcaccatca
6001 caaacttgaa tgggtcccct tttgatccct ctgaggacat ccccgccccc ctgggtgtgc
6061 ccgactttca gggaagagtc tttggtgtca tcactcaaag agacaaacag aatgccgctg
6121 ggcaaagcca gccggcaaac aggggacacg atgctgtggt ccccacttac acagcccagt
6181 ataccccaaa attgggtcag gttcaaattg gcacatggca gaccgacgat cttaaagtca
6241 accaaccagt caaattcacc ccagtcggtc tcaatgacac agaacatttc aatcagtggg
6301 tggtccctag gtacgctggt gctttaaatc taaacacaaa tcttgccccc tctgttgctc
6361 cagtgtttcc aggggagcgt ctgctcttct ttagatcata cctccccctt aagggtggtt
6421 atggaaaccc agctattgat tgcctgctac cacaagagtg ggtgcagcat ttttatcagg
6481 aagcagcccc ctcaatgagt gaggtagccc ttgtcagata catcaatccg gacactggcc
6541 gggcgctgtt tgaggccaaa ctccacagag ctggtttcat gacagtctcg agtaacacca
6601 gtgctccggt ggttgtgcct gccaacggat acttcagatt tgactcttgg gtgaaccaat
6661 tttattctct tgcccccatg ggaactggaa atgggcgtag aaggattcag tgatggctgg
6721 agcttttgta gctggtctcg cgggggatgt gctcagcaat gggctcagct cactaattaa
6781 tgcaggtgct aatgcaataa atcagagagc agaatttgat tttaatcaga aattacagca
6841 aaattctttt aatcatgata aggagatgtt gcaggctcag attcaggcaa ctaagcagct
6901 gcaggcagac atgatggcta taaagcaggg ggttctgacc gctggcggct tttcccctac
6961 tgatgcagcc agaggcgctg tgaacgcgcc catgacacag gcgctggatt ggaatggcac
7021 aaggtattgg gcaccaggct ccatgaggac tacatcctac tctgggaggt tcacatcgac
7081 cgccccggca aggcaggccg atcttcaaca cactcaaaat cggccttcga gtggctcttc
7141 tgtgtcctct tatgccactc aatcttcaag accaactcta accacaacca cagggtcctc
7201 acatagtaca acctcatcca attcgacccg tagcacaaac ctttcccagt cgacggtctc
7261 tagggctgca tccaggacta gtgagtgggt tagagatcaa aatagaaatt tggaacccta
7321 catgcatggt gccttacaga cagcctttgt caccccacct tccagcaggg catctgacgg
7381 gacagtctca accgtcccca aaggtgtttt ggactcctgg acacctgcgt tcaacacccg
7441 caggcagccg ctttttgcac acctccgtaa gaggggggag tcacaagctt agtgaaaagg
7501 tgaaaaattt actttaaatg aattgattct acctttt
//